Seed Cluster Table

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missmath polyA/T blast hit
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total hit 35462
Id No 0 to 19 [Next 20]

NoCluster IdContig IdFragmentshomology search resultscoree-valueconsensus lengthover view
10933
4109
AV520784.r
1
ref|NP_177587.1| geranylgeranyl reductase; protein id: At1g74470.1, supported by cDNA: gi_15292918, supported by cDNA: gi_15450454, supported by cDNA: gi_16648980, supported by cDNA: gi_18700166, supported by cDNA: gi_20259040, supported by cDNA: gi_20857315 [Arabidopsis thaliana]|gi|25326665|pir||F96773 geranylgeranyl reductase, 47568-49165 [imported] - Arabidopsis thaliana|gi|12324810|gb|AAG52372.1|AC011765_24 geranylgeranyl reductase; 47568-49165 [Arabidopsis thaliana]|gi|15292919|gb|AAK92830.1| putative geranylgeranyl reductase [Arabidopsis thaliana]|gi|15450455|gb|AAK96521.1| At1g74470/F1M20_15 [Arabidopsis thaliana]|gi|16648981|gb|AAL24342.1| geranylgeranyl reductase [Arabidopsis thaliana]|gi|18700167|gb|AAL77695.1| At1g74470/F1M20_15 [Arabidopsis thaliana]|gi|20259041|gb|AAM14236.1| putative geranylgeranyl reductase [Arabidopsis thaliana]|gi|20857316|gb|AAM26711.1| At1g74470/F1M20_15 [Arabidopsis thaliana]|gi|23397186|gb|AAN31876.1| putative geranylgeranyl reductase [Arabidopsis thaliana]|gi|27311931|gb|AAO00931.1| geranylgeranyl reductase [Arabidopsis thaliana]653e-10101
21161
9855
BE845346.x
1
pir||T52416 lti30 protein [imported] - Arabidopsis thaliana (fragment)|gi|509260|emb|CAA54704.1| lti30 [Arabidopsis thaliana]769e-14101
12135
4838
AV525851.f
1
ref|NP_178585.1| light-harvesting chlorophyll a/b binding protein; protein id: At2g05100.1, supported by cDNA: gi_15450348, supported by cDNA: gi_15450493, supported by cDNA: gi_4741943, supported by cDNA: gi_4741947 [Arabidopsis thaliana]|gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]|gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]|gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]|gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]822e-15107
10124
3567
R87050.x
1
pir||RKMUA1 ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain A1 precursor - Arabidopsis thaliana782e-14113
15131
6548
PTA.sd.6548.C3
2
ref|NP_030434.1| expressed protein; protein id: At2g38860.1, supported by cDNA: 114031. [Arabidopsis thaliana]|gi|20197441|gb|AAC79625.2| expressed protein [Arabidopsis thaliana]|gi|21536875|gb|AAM61207.1| unknown [Arabidopsis thaliana]538e-07117
5220
2022
AV525740.f
1
ref|NP_174286.1| light-harvesting chlorophyll a/b binding protein; protein id: At1g29930.1, supported by cDNA: gi_15010743, supported by cDNA: gi_15293002, supported by cDNA: gi_16226882, supported by cDNA: gi_16648806, supported by cDNA: gi_20258872 [Arabidopsis thaliana]|gi|115783|sp|P04778|CB22_ARATH Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP)|gi|25299019|pir||A86423 probable chlorophyll a/b-binding protein [imported] - Arabidopsis thaliana|gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis thaliana]|gi|9972353|gb|AAG10603.1|AC008030_3 Putative chlorophyll a/b-binding protein [Arabidopsis thaliana]|gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23 [Arabidopsis thaliana]|gi|15293003|gb|AAK93612.1| putative photosystem II type I chlorophyll a/b binding protein [Arabidopsis thaliana]|gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23 [Arabidopsis thaliana]|gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23 [Arabidopsis thaliana]|gi|20258873|gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]544e-07119
3682
1470
AV536970.f
1
gb|AAF79625.1|AC027665_26 F5M15.5 [Arabidopsis thaliana]|gi|8886925|gb|AAF80611.1|AC069251_4 F2D10.11 [Arabidopsis thaliana]852e-16120
14951
6500
BE844938.x
1
gb|AAM63604.1| putative anthocyanidin synthase [Arabidopsis thaliana]853e-16123
14952
6500
BE844963.x
1
gb|AAM63604.1| putative anthocyanidin synthase [Arabidopsis thaliana]853e-16123
14953
6500
BE845010.x
1
gb|AAM63604.1| putative anthocyanidin synthase [Arabidopsis thaliana]853e-16123
9378
3567
AV536513.f
1
pir||RKMUA1 ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain A1 precursor - Arabidopsis thaliana806e-15126
12382
4920
AU235568.f
1
ref|NP_178982.1| unknown protein; protein id: At2g13580.1 [Arabidopsis thaliana]|gi|25411500|pir||G84508 hypothetical protein At2g13580 [imported] - Arabidopsis thaliana|gi|4558663|gb|AAD22681.1| unknown protein [Arabidopsis thaliana]578e-08128
14701
6392
AV545051.r
1
ref|NP_181221.1| putative aquaporin (tonoplast intrinsic protein gamma); protein id: At2g36830.1, supported by cDNA: 36633., supported by cDNA: gi_13877818, supported by cDNA: gi_16323491 [Arabidopsis thaliana]|gi|135860|sp|P25818|TIPG_ARATH Tonoplast intrinsic protein, gamma (Gamma TIP) (Aquaporin-TIP) (Tonoplast intrinsic protein, root-specific RB7)|gi|99761|pir||S22202 tonoplast intrinsic protein gamma - Arabidopsis thaliana|gi|16312|emb|CAA45115.1| tonoplast intrinsic protein, gamma-TIP(Ara). [Arabidopsis thaliana]|gi|166732|gb|AAA32806.1| tonoplast intrinsic protein|gi|4883600|gb|AAD31569.1| putative aquaporin (tonoplast intrinsic protein gamma) [Arabidopsis thaliana]|gi|13877819|gb|AAK43987.1|AF370172_1 putative tonoplast intrinsic protein gamma, aquaporin [Arabidopsis thaliana]|gi|16323492|gb|AAL15240.1| putative aquaporin [Arabidopsis thaliana]|gi|445129|prf||1908432B tonoplast intrinsic protein gamma821e-15129
24472
11640
At4g16240.f
1
No Hits0129
28200
13371
AV525781.f
1
gb|AAL16224.1|AF428455_1 AT4g38970/F19H22_70 [Arabidopsis thaliana]838e-16129
31495
15126
BE845198.x
1
ref|NP_568454.1| vegetative storage protein Vsp2; protein id: At5g24770.1, supported by cDNA: 124735., supported by cDNA: gi_15081778, supported by cDNA: gi_15292770, supported by cDNA: gi_20260183, supported by cDNA: gi_21281047, supported by cDNA: gi_2373398 [Arabidopsis thaliana]|gi|12643238|sp|O82122|VSP2_ARATH Vegetative storage protein 2 precursor|gi|3668175|dbj|BAA33447.1| vegetative storage protein [Arabidopsis thaliana]|gi|10129656|emb|CAC08251.1| vegetative storage protein Vsp2 [Arabidopsis thaliana]|gi|15081779|gb|AAK82544.1| AT5g24770/T4C12_40 [Arabidopsis thaliana]|gi|15292771|gb|AAK92754.1| putative vegetative storage protein Vsp2 [Arabidopsis thaliana]|gi|20260184|gb|AAM12990.1| vegetative storage protein Vsp2 [Arabidopsis thaliana]|gi|21281048|gb|AAM45131.1| putative vegetative storage protein Vsp2 [Arabidopsis thaliana]|gi|21387043|gb|AAM47925.1| vegetative storage protein Vsp2 [Arabidopsis thaliana]|gi|23397237|gb|AAN31900.1| putative vegetative storage protein Vsp2 [Arabidopsis thaliana]|gi|23397239|gb|AAN31901.1| putative vegetative storage protein Vsp2 [Arabidopsis thaliana]939e-19129
31496
15126
BE845226.x
1
ref|NP_568454.1| vegetative storage protein Vsp2; protein id: At5g24770.1, supported by cDNA: 124735., supported by cDNA: gi_15081778, supported by cDNA: gi_15292770, supported by cDNA: gi_20260183, supported by cDNA: gi_21281047, supported by cDNA: gi_2373398 [Arabidopsis thaliana]|gi|12643238|sp|O82122|VSP2_ARATH Vegetative storage protein 2 precursor|gi|3668175|dbj|BAA33447.1| vegetative storage protein [Arabidopsis thaliana]|gi|10129656|emb|CAC08251.1| vegetative storage protein Vsp2 [Arabidopsis thaliana]|gi|15081779|gb|AAK82544.1| AT5g24770/T4C12_40 [Arabidopsis thaliana]|gi|15292771|gb|AAK92754.1| putative vegetative storage protein Vsp2 [Arabidopsis thaliana]|gi|20260184|gb|AAM12990.1| vegetative storage protein Vsp2 [Arabidopsis thaliana]|gi|21281048|gb|AAM45131.1| putative vegetative storage protein Vsp2 [Arabidopsis thaliana]|gi|21387043|gb|AAM47925.1| vegetative storage protein Vsp2 [Arabidopsis thaliana]|gi|23397237|gb|AAN31900.1| putative vegetative storage protein Vsp2 [Arabidopsis thaliana]|gi|23397239|gb|AAN31901.1| putative vegetative storage protein Vsp2 [Arabidopsis thaliana]939e-19129
34441
16754
At5g57730.f
1
ref|NP_200581.1| unknown protein; protein id: At5g57730.1 [Arabidopsis thaliana]|gi|9759270|dbj|BAB09591.1| gene_id:MRI1.9~unknown protein [Arabidopsis thaliana]875e-17129
2132
905
AV518094.r
1
ref|NP_172750.1| putative calcium-binding protein, calreticulin; protein id: At1g12900.1 [Arabidopsis thaliana]|gi|25284345|pir||F86262 F13K23.15 protein - Arabidopsis thaliana|gi|8698736|gb|AAF78494.1|AC012187_14 Strong similarity to GAPDH subunit A from Pisum sativum gb|X15190 and contains a GAPDH PF|00044 domain. ESTs gb|T42920, gb|T43410, gb|T46101, gb|T04006, gb|T20630, gb|Z34677, gb|T46805, gb|N37754, gb|N37754, gb|Z26072, gb|H37169, gb|H76419, gb|T20834, gb|T21557, gb|AA713258, gb|T04005, gb|AI099909, gb|Z34793 come from this gene. [Arabidopsis thaliana]951e-19137
3589
1460
Z18201.f
1
ref|NP_173459.1| plastocyanin; protein id: At1g20340.1, supported by cDNA: 23406., supported by cDNA: gi_12247994, supported by cDNA: gi_13265533, supported by cDNA: gi_13605743, supported by cDNA: gi_166695 [Arabidopsis thaliana]|gi|12644265|sp|P42699|PLAT_ARATH Plastocyanin major isoform, chloroplast precursor (DNA-damage-repair/toleration protein DRT112)|gi|25282804|pir||B86337 plastocyanin [similarity] - Arabidopsis thaliana|gi|9558592|gb|AAF88155.1|AC026234_6 Contains similarity to a DNA-damage-repair/toleration protein DRT112 precursor from Arabidopsis thaliana gi|1169201 and is a member of the copper binding proteins family PF|00127. ESTs gb|BE039446, gb|T46296, gb|N64992, gb|T21043, gb|BE039361, gb|T41789, gb|AA728654, gb|T22293, gb|T42572, gb|R65100, gb|N65354, gb|N37323, gb|R90003, gb|BE039026, gb|BE038950, gb|AA713227 come from this gene|gi|11692900|gb|AAG40053.1|AF324702_1 At1g20340 [Arabidopsis thaliana]|gi|11908064|gb|AAG41461.1|AF326879_1 putative plastocyanin [Arabidopsis thaliana]|gi|12247995|gb|AAG50089.1|AF334383_1 putative plastocyanin [Arabidopsis thaliana]|gi|13605744|gb|AAK32865.1|AF361853_1 At1g20340/F14O10_4 [Arabidopsis thaliana]|gi|24111321|gb|AAN46784.1| At1g20340/F14O10_4 [Arabidopsis thaliana]622e-09137
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