BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CF774471.x
(279 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T02245 hypothetical protein P1.11659_3 - human|gi|2984... 33 1.1
emb|CAC11141.1| NikS protein [Streptomyces tendae] 33 1.1
gb|AAK53061.1| nikkomycin biosynthesis protein SanS [Strept... 33 1.1
ref|XP_353910.1| P0446F04.14 [Oryza sativa (japonica cultiv... 32 2.5
ref|NP_354730.1| AGR_C_3205p [Agrobacterium tumefaciens str... 30 9.3
>pir||T02245 hypothetical protein P1.11659_3 - human|gi|2984587|gb|AAC07985.1|
P1.11659_3 [Homo sapiens]
Length = 880
Score = 33.5 bits (75), Expect = 1.1
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -3
Query: 217 PEFGRERDRERFKNPIPDPIPW-ANKGWXFSNLKAFFKFGKSKSWEEIH 74
P F RD+E K P P +PW A W + F+ G + IH
Sbjct: 718 PGFMERRDKESSKTPCPFTVPWQAVSAWALMATQTFYSTGHQPVFPAIH 766
>emb|CAC11141.1| NikS protein [Streptomyces tendae]
Length = 424
Score = 33.5 bits (75), Expect = 1.1
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = -1
Query: 231 GMKRPLSLGERETERDSKIRFQIPFPGQT 145
G++R LSLGERE R ++IR ++ PGQ+
Sbjct: 77 GVRRILSLGEREVLRAARIRAELGLPGQS 105
>gb|AAK53061.1| nikkomycin biosynthesis protein SanS [Streptomyces ansochromogenes]
Length = 424
Score = 33.5 bits (75), Expect = 1.1
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = -1
Query: 231 GMKRPLSLGERETERDSKIRFQIPFPGQT 145
G++R LSLGERE R ++IR ++ PGQ+
Sbjct: 77 GVRRILSLGEREVLRAARIRAELGLPGQS 105
>ref|XP_353910.1| P0446F04.14 [Oryza sativa (japonica cultivar-group)]
Length = 150
Score = 32.3 bits (72), Expect = 2.5
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 200 LSPKLRGRFIPXSTTTRPDSIPIF 271
L PKLR RF+P S TTR +P++
Sbjct: 98 LQPKLRKRFVPFSPTTRSCQVPLY 121
>ref|NP_354730.1| AGR_C_3205p [Agrobacterium tumefaciens str.
C58]|gi|17935639|ref|NP_532429.1| threonyl-tRNA
synthetase [Agrobacterium tumefaciens str.
C58]|gi|22654115|sp|Q8UEL1|SYT_AGRT5 Threonyl-tRNA
synthetase (Threonine--tRNA ligase)
(ThrRS)|gi|25292944|pir||B97570 threonyl-tRNA synthetase
(threonine-tRNA ligase) (thrrs) [imported] -
Agrobacterium tumefaciens (strain C58,
Cereon)|gi|25292945|pir||AC2791 threonyl-tRNA synthetase
[imported] - Agrobacterium tumefaciens (strain C58,
Dupont)|gi|15156846|gb|AAK87515.1| AGR_C_3205p
[Agrobacterium tumefaciens str.
C58]|gi|17740186|gb|AAL42745.1| threonyl-tRNA synthetase
[Agrobacterium tumefaciens str. C58]
Length = 667
Score = 30.4 bits (67), Expect = 9.3
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 208 GRERDRERFKNPIPDPIPWANKGW-XFSNLKAFFKFGKSKSWEEIHLLSVRSSDL 47
GRE D F+ P + W KGW F L A+ + + +++E++ V L
Sbjct: 250 GREMDLFHFQEEGPGVVFWHGKGWRMFQTLTAYMRRRLANTYQEVNAPQVLDKSL 304
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 68
effective length of database: 500,832,654
effective search space used: 12019983696
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)