BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= CF774452.x
         (131 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM19840.1|  AT5g60600/mup24_10 [Arabidopsis thaliana]          37   0.12 
ref|NP_200868.2|  1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosp...    37   0.12 
ref|NP_851233.1|  1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosp...    37   0.12 
dbj|BAB09833.1|  GcpE protein [Arabidopsis thaliana]               37   0.12 
gb|AAL91150.1|  GcpE protein [Arabidopsis thaliana]|gi|34365...    37   0.12 
dbj|BAD19354.1|  putative GCPE protein [Oryza sativa (japoni...    33   1.7  
gb|AAO24774.1|  GCPE protein [Catharanthus roseus]                 32   5.0  

>gb|AAM19840.1| AT5g60600/mup24_10 [Arabidopsis thaliana]
          Length = 741

 Score = 37.0 bits (84), Expect = 0.12
 Identities = 25/43 (58%), Positives = 27/43 (62%)
 Frame = +1

Query: 1   VQKEGEEXDYRKCPFTGHGSVLHVHFSGIN*RAPELLYRXLAT 129
           VQKEGEE DYR       GSVL +  S    +APELLYR LAT
Sbjct: 395 VQKEGEEVDYRNV-LHRDGSVL-MSISLDQLKAPELLYRSLAT 435



>ref|NP_200868.2| 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, putative /
           GcpE family protein [Arabidopsis
           thaliana]|gi|27462472|gb|AAO15446.1| GcpE [Arabidopsis
           thaliana]
          Length = 740

 Score = 37.0 bits (84), Expect = 0.12
 Identities = 25/43 (58%), Positives = 27/43 (62%)
 Frame = +1

Query: 1   VQKEGEEXDYRKCPFTGHGSVLHVHFSGIN*RAPELLYRXLAT 129
           VQKEGEE DYR       GSVL +  S    +APELLYR LAT
Sbjct: 394 VQKEGEEVDYRNV-LHRDGSVL-MSISLDQLKAPELLYRSLAT 434



>ref|NP_851233.1| 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, putative /
           GcpE family protein [Arabidopsis thaliana]
          Length = 741

 Score = 37.0 bits (84), Expect = 0.12
 Identities = 25/43 (58%), Positives = 27/43 (62%)
 Frame = +1

Query: 1   VQKEGEEXDYRKCPFTGHGSVLHVHFSGIN*RAPELLYRXLAT 129
           VQKEGEE DYR       GSVL +  S    +APELLYR LAT
Sbjct: 395 VQKEGEEVDYRNV-LHRDGSVL-MSISLDQLKAPELLYRSLAT 435



>dbj|BAB09833.1| GcpE protein [Arabidopsis thaliana]
          Length = 716

 Score = 37.0 bits (84), Expect = 0.12
 Identities = 25/43 (58%), Positives = 27/43 (62%)
 Frame = +1

Query: 1   VQKEGEEXDYRKCPFTGHGSVLHVHFSGIN*RAPELLYRXLAT 129
           VQKEGEE DYR       GSVL +  S    +APELLYR LAT
Sbjct: 370 VQKEGEEVDYRNV-LHRDGSVL-MSISLDQLKAPELLYRSLAT 410



>gb|AAL91150.1| GcpE protein [Arabidopsis thaliana]|gi|34365569|gb|AAQ65096.1|
           At5g60600 [Arabidopsis thaliana]
          Length = 741

 Score = 37.0 bits (84), Expect = 0.12
 Identities = 25/43 (58%), Positives = 27/43 (62%)
 Frame = +1

Query: 1   VQKEGEEXDYRKCPFTGHGSVLHVHFSGIN*RAPELLYRXLAT 129
           VQKEGEE DYR       GSVL +  S    +APELLYR LAT
Sbjct: 395 VQKEGEEVDYRNV-LHRDGSVL-MSISLDQLKAPELLYRSLAT 435



>dbj|BAD19354.1| putative GCPE protein [Oryza sativa (japonica cultivar-group)]
          Length = 744

 Score = 33.1 bits (74), Expect = 1.7
 Identities = 19/42 (45%), Positives = 24/42 (56%)
 Frame = +1

Query: 1   VQKEGEEXDYRKCPFTGHGSVLHVHFSGIN*RAPELLYRXLA 126
           +QKEGEE DYR         ++ V    +  +APELLYR LA
Sbjct: 398 LQKEGEEVDYRGVLHRDGSVLMSVSLDQL--KAPELLYRSLA 437



>gb|AAO24774.1| GCPE protein [Catharanthus roseus]
          Length = 740

 Score = 31.6 bits (70), Expect = 5.0
 Identities = 18/42 (42%), Positives = 23/42 (53%)
 Frame = +1

Query: 1   VQKEGEEXDYRKCPFTGHGSVLHVHFSGIN*RAPELLYRXLA 126
           VQKEGEE DYR         ++ V    +  + PELLY+ LA
Sbjct: 395 VQKEGEEVDYRGVLHRDGSVLMSVSLDQL--KTPELLYKSLA 434



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 19
effective length of database: 593,702,256
effective search space used: 14248854144
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)