BLAST Search Results

BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= CF774444.x
         (278 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||T52323  chlorophyll a/b-binding protein Lhcb2 [imported...    59   3e-08
ref|NP_189406.1|  chlorophyll A-B binding protein (LHCB2:4) ...    59   3e-08
ref|NP_178582.1|  chlorophyll A-B binding protein / LHCII ty...    59   3e-08
pir||T52326  chlorophyll a/b-binding protein Lhcb2 [imported...    59   3e-08
ref|NP_178585.1|  chlorophyll A-B binding protein / LHCII ty...    57   7e-08
emb|CAA89823.1|  light-harvesting chlorophyll a/b binding pr...    57   9e-08
gb|AAD48017.1|  chlorophyll a/b binding protein [Rumex palus...    57   9e-08
sp|P27494|CB23_TOBAC  Chlorophyll a-b binding protein 36, ch...    56   2e-07
emb|CAC84495.1|  putative chlorophyll A-B binding protein ty...    56   2e-07
pir||CDPJ2L  chlorophyll a/b-binding protein 22L precursor -...    56   2e-07

>pir||T52323 chlorophyll a/b-binding protein Lhcb2 [imported] - Arabidopsis
           thaliana|gi|4741948|gb|AAD28771.1| Lhcb2 protein
           [Arabidopsis thaliana]
          Length = 265

 Score = 58.5 bits (140), Expect = 3e-08
 Identities = 36/78 (46%), Positives = 39/78 (49%)
 Frame = +2

Query: 11  PGGAXDPLNLG*GSRGFLCX*RXKELKNGRLAMFSMVGXXXXSHXXWXKXPLRTYLIXXX 190
           PGGA DPLNL      F    + KELKNGRLAMFSM G    +     K P+        
Sbjct: 190 PGGAFDPLNLAEDPEAF-SELKVKELKNGRLAMFSMFGFFVQA-IVTGKGPIENLFDHLA 247

Query: 191 ILXXNNAWXYAXNFXPRK 244
               NNAW YA NF P K
Sbjct: 248 DPVANNAWSYATNFVPGK 265



>ref|NP_189406.1| chlorophyll A-B binding protein (LHCB2:4) [Arabidopsis
           thaliana]|gi|25299028|pir||T52322 chlorophyll
           a/b-binding protein Lhcb2 [imported] - Arabidopsis
           thaliana|gi|4741950|gb|AAD28772.1| Lhcb2 protein
           [Arabidopsis thaliana]|gi|9294474|dbj|BAB02693.1| light
           harvesting chlorophyll a/b-binding protein [Arabidopsis
           thaliana]|gi|13899125|gb|AAK48984.1| light harvesting
           chlorophyll a/b-binding protein [Arabidopsis
           thaliana]|gi|30023746|gb|AAP13406.1| At3g27700
           [Arabidopsis thaliana]
          Length = 266

 Score = 58.5 bits (140), Expect = 3e-08
 Identities = 36/78 (46%), Positives = 39/78 (49%)
 Frame = +2

Query: 11  PGGAXDPLNLG*GSRGFLCX*RXKELKNGRLAMFSMVGXXXXSHXXWXKXPLRTYLIXXX 190
           PGGA DPLNL      F    + KELKNGRLAMFSM G    +     K P+        
Sbjct: 191 PGGAFDPLNLAEDPEAF-SELKVKELKNGRLAMFSMFGFFVQA-IVTGKGPIENLFDHIA 248

Query: 191 ILXXNNAWXYAXNFXPRK 244
               NNAW YA NF P K
Sbjct: 249 DPVANNAWAYATNFVPGK 266



>ref|NP_178582.1| chlorophyll A-B binding protein / LHCII type II (LHCB2.2)
           [Arabidopsis thaliana]|gi|25299030|pir||T52324 probable
           chlorophyll a/b binding protein At2g05070 [imported] -
           Arabidopsis thaliana|gi|4585935|gb|AAD25595.1| putative
           chlorophyll a/b binding protein [Arabidopsis
           thaliana]|gi|4741946|gb|AAD28770.1| Lhcb2 protein
           [Arabidopsis thaliana]|gi|15809901|gb|AAL06878.1|
           At2g05070/F1O13.20 [Arabidopsis
           thaliana]|gi|17064974|gb|AAL32641.1| putative
           chlorophyll a/b binding protein [Arabidopsis
           thaliana]|gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20
           [Arabidopsis thaliana]|gi|20260048|gb|AAM13371.1|
           putative chlorophyll a/b binding protein [Arabidopsis
           thaliana]
          Length = 265

 Score = 58.5 bits (140), Expect = 3e-08
 Identities = 36/78 (46%), Positives = 39/78 (49%)
 Frame = +2

Query: 11  PGGAXDPLNLG*GSRGFLCX*RXKELKNGRLAMFSMVGXXXXSHXXWXKXPLRTYLIXXX 190
           PGGA DPLNL      F    + KELKNGRLAMFSM G    +     K P+        
Sbjct: 190 PGGAFDPLNLAEDPEAF-SELKVKELKNGRLAMFSMFGFFVQA-IVTGKGPIENLFDHLA 247

Query: 191 ILXXNNAWXYAXNFXPRK 244
               NNAW YA NF P K
Sbjct: 248 DPVANNAWSYATNFVPGK 265



>pir||T52326 chlorophyll a/b-binding protein Lhcb2 [imported] - Arabidopsis
           thaliana|gi|4741944|gb|AAD28769.1| Lhcb2 protein
           [Arabidopsis thaliana]
          Length = 265

 Score = 58.5 bits (140), Expect = 3e-08
 Identities = 36/78 (46%), Positives = 39/78 (49%)
 Frame = +2

Query: 11  PGGAXDPLNLG*GSRGFLCX*RXKELKNGRLAMFSMVGXXXXSHXXWXKXPLRTYLIXXX 190
           PGGA DPLNL      F    + KELKNGRLAMFSM G    +     K P+        
Sbjct: 190 PGGAFDPLNLAEDPEAF-SELKVKELKNGRLAMFSMFGFFVQA-IVTGKGPIENLFDHLA 247

Query: 191 ILXXNNAWXYAXNFXPRK 244
               NNAW YA NF P K
Sbjct: 248 DPVANNAWSYATNFVPGK 265



>ref|NP_178585.1| chlorophyll A-B binding protein / LHCII type II (LHCB2.1) (LHCB2.3)
           [Arabidopsis thaliana]|gi|4874296|gb|AAD31358.1|
           putative chlorophyll a/b binding protein [Arabidopsis
           thaliana]|gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2
           [Arabidopsis thaliana]|gi|15450494|gb|AAK96540.1|
           At2g05100/F15L11.2 [Arabidopsis
           thaliana]|gi|25054901|gb|AAN71932.1| putative
           chlorophyll a/b binding protein [Arabidopsis thaliana]
          Length = 265

 Score = 57.4 bits (137), Expect = 7e-08
 Identities = 35/76 (46%), Positives = 38/76 (49%)
 Frame = +2

Query: 11  PGGAXDPLNLG*GSRGFLCX*RXKELKNGRLAMFSMVGXXXXSHXXWXKXPLRTYLIXXX 190
           PGGA DPLNL      F    + KELKNGRLAMFSM G    +     K P+        
Sbjct: 190 PGGAFDPLNLAEDPEAF-SELKVKELKNGRLAMFSMFGFFVQA-IVTGKGPIENLFDHLA 247

Query: 191 ILXXNNAWXYAXNFXP 238
               NNAW YA NF P
Sbjct: 248 DPVANNAWSYATNFVP 263



>emb|CAA89823.1| light-harvesting chlorophyll a/b binding protein of photosystem II
           [Pseudotsuga menziesii]
          Length = 234

 Score = 57.0 bits (136), Expect = 9e-08
 Identities = 35/78 (44%), Positives = 38/78 (47%)
 Frame = +2

Query: 11  PGGAXDPLNLG*GSRGFLCX*RXKELKNGRLAMFSMVGXXXXSHXXWXKXPLRTYLIXXX 190
           PGGA DPL L      F    + KELKNGRLAMFSM G    +     K P+        
Sbjct: 159 PGGAFDPLGLADDPEAF-AELKVKELKNGRLAMFSMFGFFVQA-IVTGKGPIENLFDHLA 216

Query: 191 ILXXNNAWXYAXNFXPRK 244
               NNAW YA NF P K
Sbjct: 217 DPTANNAWAYATNFVPGK 234



>gb|AAD48017.1| chlorophyll a/b binding protein [Rumex palustris]
          Length = 264

 Score = 57.0 bits (136), Expect = 9e-08
 Identities = 35/81 (43%), Positives = 40/81 (49%)
 Frame = +2

Query: 2   RFIPGGAXDPLNLG*GSRGFLCX*RXKELKNGRLAMFSMVGXXXXSHXXWXKXPLRTYLI 181
           +  PGGA DPL L      F    + KELKNGRLAMFSM G    +     K P+   + 
Sbjct: 186 KLYPGGAFDPLGLADDPEAF-AELKVKELKNGRLAMFSMFGFFVQA-IVTGKGPVENLVD 243

Query: 182 XXXILXXNNAWXYAXNFXPRK 244
                  NNAW YA NF P K
Sbjct: 244 HIADPVANNAWAYATNFVPGK 264



>sp|P27494|CB23_TOBAC Chlorophyll a-b binding protein 36, chloroplast precursor (LHCII
           type I CAB-36) (LHCP)|gi|100311|pir||S21827 chlorophyll
           a/b-binding protein (cab-36) - common
           tobacco|gi|19827|emb|CAA41188.1| chlorophyll a/b binding
           protein [Nicotiana tabacum]
          Length = 265

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 34/81 (41%), Positives = 39/81 (47%)
 Frame = +2

Query: 2   RFIPGGAXDPLNLG*GSRGFLCX*RXKELKNGRLAMFSMVGXXXXSHXXWXKXPLRTYLI 181
           +  PGGA DPL L      F    + KE+KNGRLAMFSM G    +     K P+     
Sbjct: 187 KIYPGGAFDPLGLADDPEAF-AELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPIENLFD 244

Query: 182 XXXILXXNNAWXYAXNFXPRK 244
                  NNAW YA NF P K
Sbjct: 245 HVADPVANNAWAYATNFVPGK 265



>emb|CAC84495.1| putative chlorophyll A-B binding protein type I [Pinus pinaster]
          Length = 195

 Score = 55.8 bits (133), Expect = 2e-07
 Identities = 34/78 (43%), Positives = 38/78 (48%)
 Frame = +2

Query: 11  PGGAXDPLNLG*GSRGFLCX*RXKELKNGRLAMFSMVGXXXXSHXXWXKXPLRTYLIXXX 190
           PGGA DPL L      F    + KE+KNGRLAMFSM G    +     K P+        
Sbjct: 120 PGGAFDPLGLADDPEAF-AELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPIENLYDHLA 177

Query: 191 ILXXNNAWXYAXNFXPRK 244
               NNAW YA NF P K
Sbjct: 178 DPTANNAWAYATNFVPGK 195



>pir||CDPJ2L chlorophyll a/b-binding protein 22L precursor - petunia
          Length = 267

 Score = 55.8 bits (133), Expect = 2e-07
 Identities = 35/78 (44%), Positives = 38/78 (47%)
 Frame = +2

Query: 11  PGGAXDPLNLG*GSRGFLCX*RXKELKNGRLAMFSMVGXXXXSHXXWXKXPLRTYLIXXX 190
           PGG+ DPL L      F    + KE KNGRLAMFSM G    +     K PL        
Sbjct: 192 PGGSFDPLGLAEDPEAF-AELKVKETKNGRLAMFSMFGFFIQAIVT-GKGPLENLADHLV 249

Query: 191 ILXXNNAWXYAXNFXPRK 244
               NNAW YA NF PRK
Sbjct: 250 DPVNNNAWSYATNFVPRK 267



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 68
effective length of database: 500,832,654
effective search space used: 12019983696
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results