BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CF774415.x
(240 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188850.1| 20S proteasome alpha subunit C (PAC1) (PRC... 49 2e-05
emb|CAA73624.1| multicatalytic endopeptidase [Arabidopsis t... 49 2e-05
sp|P52427|PSA4_SPIOL Proteasome subunit alpha type 4 (20S p... 35 0.30
pir||T09662 multicatalytic endopeptidase complex chain Y13 ... 34 0.68
gb|AAF34770.1| proteasome 27 kDa subunit [Euphorbia esula] 31 5.7
>ref|NP_188850.1| 20S proteasome alpha subunit C (PAC1) (PRC9) [Arabidopsis
thaliana]|gi|12643237|sp|O81148|PSA4_ARATH Proteasome
subunit alpha type 4 (20S proteasome alpha subunit C)
(Proteasome 27 kDa subunit)|gi|25290058|pir||T51969 20S
proteasome subunit PAC1 [imported] - Arabidopsis
thaliana|gi|3421077|gb|AAC32057.1| 20S proteasome
subunit PAC1 [Arabidopsis
thaliana]|gi|11994731|dbj|BAB03060.1| 20S proteasome
subunit PAC1 [Arabidopsis
thaliana]|gi|14423432|gb|AAK62398.1| 20S proteasome
subunit PAC1 [Arabidopsis
thaliana]|gi|21554045|gb|AAM63126.1| 20S proteasome
subunit PAC1 [Arabidopsis
thaliana]|gi|23197586|gb|AAN15320.1| 20S proteasome
subunit PAC1 [Arabidopsis thaliana]
Length = 250
Score = 49.3 bits (116), Expect = 2e-05
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = -3
Query: 238 HVHSPDSLTKLLVKHGVXQPXAETS 164
HVHSP+SLTKLLVKHGV QP AETS
Sbjct: 226 HVHSPESLTKLLVKHGVTQPAAETS 250
>emb|CAA73624.1| multicatalytic endopeptidase [Arabidopsis thaliana]
Length = 250
Score = 49.3 bits (116), Expect = 2e-05
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = -3
Query: 238 HVHSPDSLTKLLVKHGVXQPXAETS 164
HVHSP+SLTKLLVKHGV QP AETS
Sbjct: 226 HVHSPESLTKLLVKHGVTQPAAETS 250
>sp|P52427|PSA4_SPIOL Proteasome subunit alpha type 4 (20S proteasome alpha subunit C)
(20S proteasome subunit alpha-3) (Proteasome 27 kDa
subunit)|gi|7435866|pir||T09160 proteasome subunit -
spinach|gi|1262146|emb|CAA65660.1| proteasome subunit
[Spinacia oleracea]
Length = 250
Score = 35.4 bits (80), Expect = 0.30
Identities = 15/24 (62%), Positives = 19/24 (78%)
Frame = -3
Query: 235 VHSPDSLTKLLVKHGVXQPXAETS 164
VHSP+SL +LL + G+ QP AETS
Sbjct: 227 VHSPESLNRLLTESGLTQPAAETS 250
>pir||T09662 multicatalytic endopeptidase complex chain Y13 homolog - alfalfa
(fragment)|gi|1524178|emb|CAA96517.1| proteasome subunit
[Medicago sativa]
Length = 101
Score = 34.3 bits (77), Expect = 0.68
Identities = 16/23 (69%), Positives = 18/23 (77%)
Frame = -3
Query: 235 VHSPDSLTKLLVKHGVXQPXAET 167
V SP++LTKLLVK GV QP ET
Sbjct: 78 VCSPENLTKLLVKSGVTQPATET 100
>gb|AAF34770.1| proteasome 27 kDa subunit [Euphorbia esula]
Length = 242
Score = 31.2 bits (69), Expect = 5.7
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = -3
Query: 235 VHSPDSLTKLLVKHGVXQPXAETS 164
V SP++++KLLV++GV QP A+ S
Sbjct: 219 VCSPETVSKLLVQYGVTQPSADAS 242
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 55
effective length of database: 525,471,528
effective search space used: 12611316672
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)