BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CF774411.x
(179 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP44089.1| chlorophyll a/b binding protein [Brassica ol... 52 4e-06
gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis... 52 4e-06
ref|NP_174286.1| chlorophyll A-B binding protein 2, chlorop... 52 4e-06
ref|NP_564339.1| chlorophyll A-B binding protein 2, chlorop... 52 4e-06
gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryant... 46 2e-04
gb|AAB87573.1| chlorophyll a/b binding protein of LHCII typ... 44 7e-04
ref|NP_565786.1| chlorophyll A-B binding protein / LHCII ty... 44 0.001
sp|P27495|CB24_TOBAC Chlorophyll a-b binding protein 40, ch... 44 0.001
ref|NP_850231.1| chlorophyll A-B binding protein / LHCII ty... 44 0.001
dbj|BAA25388.1| light harvesting chlorophyll a/b-binding pr... 43 0.002
>gb|AAP44089.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 273
Score = 51.6 bits (122), Expect = 4e-06
Identities = 28/44 (63%), Positives = 29/44 (65%)
Frame = -1
Query: 137 MALSSPAFAGXAVXLSPAASXXLGSGRVXXEEXGXKAKGSIRQP 6
MALSSPAFAG AV LSPAAS LGSGRV + K KG P
Sbjct: 6 MALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSP 49
>gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis
thaliana]|gi|21387019|gb|AAM47913.1| chlorophyll
a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 51.6 bits (122), Expect = 4e-06
Identities = 28/44 (63%), Positives = 29/44 (65%)
Frame = -1
Query: 137 MALSSPAFAGXAVXLSPAASXXLGSGRVXXEEXGXKAKGSIRQP 6
MALSSPAFAG AV LSPAAS LGSGRV + K KG P
Sbjct: 6 MALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSP 49
>ref|NP_174286.1| chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2
/ CAB-140 (CAB2B) [Arabidopsis
thaliana]|gi|115783|sp|P04778|CB22_ARATH Chlorophyll a-b
binding protein 2, chloroplast precursor (LHCII type I
CAB-2) (CAB-140) (LHCP)|gi|25299019|pir||A86423 probable
chlorophyll a/b-binding protein [imported] - Arabidopsis
thaliana|gi|16376|emb|CAA27543.1| chlorophyll a/b
binding protein (LHCP AB 140) [Arabidopsis
thaliana]|gi|9972353|gb|AAG10603.1| Putative chlorophyll
a/b-binding protein [Arabidopsis
thaliana]|gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23
[Arabidopsis thaliana]|gi|15293003|gb|AAK93612.1|
putative photosystem II type I chlorophyll a/b binding
protein [Arabidopsis
thaliana]|gi|16226883|gb|AAL16289.1| At1g29930/F1N18_23
[Arabidopsis thaliana]|gi|16648807|gb|AAL25594.1|
At1g29930/F1N18_23 [Arabidopsis
thaliana]|gi|20258873|gb|AAM14108.1| putative
chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 51.6 bits (122), Expect = 4e-06
Identities = 28/44 (63%), Positives = 29/44 (65%)
Frame = -1
Query: 137 MALSSPAFAGXAVXLSPAASXXLGSGRVXXEEXGXKAKGSIRQP 6
MALSSPAFAG AV LSPAAS LGSGRV + K KG P
Sbjct: 6 MALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSP 49
>ref|NP_564339.1| chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2
/ CAB-140 (CAB2A) [Arabidopsis
thaliana]|gi|18397288|ref|NP_564340.1| chlorophyll A-B
binding protein 165/180, chloroplast / LHCII type I
CAB-165/180 [Arabidopsis
thaliana]|gi|115767|sp|P04777|CB21_ARATH Chlorophyll a-b
binding protein 165/180, chloroplast precursor (LHCII
type I CAB-165/180) (LHCP)|gi|81603|pir||A29280
chlorophyll a/b-binding protein ab165 - Arabidopsis
thaliana|gi|16368|emb|CAA27540.1| chlorophyll a/b
binding protein (LHCP AB 65) [Arabidopsis
thaliana]|gi|16372|emb|CAA27541.1| chlorophyll a/b
binding protein (LHCP AB 180) [Arabidopsis
thaliana]|gi|9972354|gb|AAG10604.1| chlorophyll
a/b-binding protein [Arabidopsis
thaliana]|gi|9972355|gb|AAG10605.1| chlorophyll
a/b-binding protein [Arabidopsis
thaliana]|gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80
[Arabidopsis thaliana]|gi|15809862|gb|AAL06859.1|
At1g29920/F1N18_80 [Arabidopsis
thaliana]|gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80
[Arabidopsis thaliana]|gi|17065476|gb|AAL32892.1|
chlorophyll a/b-binding protein [Arabidopsis
thaliana]|gi|20148487|gb|AAM10134.1| chlorophyll
a/b-binding protein [Arabidopsis
thaliana]|gi|21555860|gb|AAM63949.1| photosystem II type
I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]|gi|22135932|gb|AAM91548.1|
photosystem II type I chlorophyll a/b binding protein,
putative [Arabidopsis
thaliana]|gi|23397170|gb|AAN31868.1| putative
photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
Length = 267
Score = 51.6 bits (122), Expect = 4e-06
Identities = 28/44 (63%), Positives = 29/44 (65%)
Frame = -1
Query: 137 MALSSPAFAGXAVXLSPAASXXLGSGRVXXEEXGXKAKGSIRQP 6
MALSSPAFAG AV LSPAAS LGSGRV + K KG P
Sbjct: 6 MALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSP 49
>gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 45.8 bits (107), Expect = 2e-04
Identities = 22/38 (57%), Positives = 26/38 (67%)
Frame = -1
Query: 137 MALSSPAFAGXAVXLSPAASXXLGSGRVXXEEXGXKAK 24
MALSSP+FAG AV LSP AS LG GR+ + K+K
Sbjct: 6 MALSSPSFAGKAVKLSPTASETLGEGRITMRKAAGKSK 43
>gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 44.3 bits (103), Expect = 7e-04
Identities = 21/44 (47%), Positives = 28/44 (62%)
Frame = -1
Query: 137 MALSSPAFAGXAVXLSPAASXXLGSGRVXXEEXGXKAKGSIRQP 6
MALSSP+FAG AV ++P++S GSGR+ + G K S P
Sbjct: 6 MALSSPSFAGMAVKVAPSSSELFGSGRISMRKTGKKPAASSGSP 49
>ref|NP_565786.1| chlorophyll A-B binding protein / LHCII type I (LHB1B2)
[Arabidopsis thaliana]|gi|2119846|pir||S23546
chlorophyll a/b-binding protein type I precursor Lhb1B2
- Arabidopsis thaliana|gi|16364|emb|CAA45790.1|
photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]|gi|3128230|gb|AAC26710.1|
photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]|gi|13926260|gb|AAK49602.1|
At2g34420/T31E10.24 [Arabidopsis
thaliana]|gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24
[Arabidopsis thaliana]|gi|15027899|gb|AAK76480.1|
putative photosystem II type I chlorophyll a/b binding
protein [Arabidopsis
thaliana]|gi|16226426|gb|AAL16165.1| At2g34420/T31E10.24
[Arabidopsis thaliana]|gi|16930391|gb|AAL31882.1|
At2g34420/T31E10.24 [Arabidopsis
thaliana]|gi|16930467|gb|AAL31919.1| At2g34420/T31E10.24
[Arabidopsis thaliana]|gi|17473689|gb|AAL38301.1|
photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]|gi|19310503|gb|AAL84985.1|
At2g34420/T31E10.24 [Arabidopsis
thaliana]|gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24
[Arabidopsis thaliana]|gi|20148517|gb|AAM10149.1|
photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]|gi|20197168|gb|AAM14954.1|
photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]|gi|23296426|gb|AAN13114.1|
putative photosystem II type I chlorophyll a/b binding
protein [Arabidopsis thaliana]
Length = 265
Score = 43.9 bits (102), Expect = 0.001
Identities = 26/44 (59%), Positives = 27/44 (61%)
Frame = -1
Query: 137 MALSSPAFAGXAVXLSPAASXXLGSGRVXXEEXGXKAKGSIRQP 6
MALSSPAFAG AV PAAS LGSGRV + K KG P
Sbjct: 6 MALSSPAFAGKAV--KPAASDVLGSGRVTMRKTVAKPKGPSGSP 47
>sp|P27495|CB24_TOBAC Chlorophyll a-b binding protein 40, chloroplast precursor (LHCII
type I CAB-40) (LHCP)|gi|72739|pir||CDNT40 chlorophyll
a/b-binding protein precursor (cab-40) - common
tobacco|gi|19829|emb|CAA36958.1| unnamed protein product
[Nicotiana tabacum]
Length = 267
Score = 43.9 bits (102), Expect = 0.001
Identities = 21/38 (55%), Positives = 27/38 (70%)
Frame = -1
Query: 137 MALSSPAFAGXAVXLSPAASXXLGSGRVXXEEXGXKAK 24
MALSSP+FAG AV LSP++S G+G+V + KAK
Sbjct: 6 MALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKAK 43
>ref|NP_850231.1| chlorophyll A-B binding protein / LHCII type I (LHB1B2)
[Arabidopsis thaliana]
Length = 251
Score = 43.9 bits (102), Expect = 0.001
Identities = 26/44 (59%), Positives = 27/44 (61%)
Frame = -1
Query: 137 MALSSPAFAGXAVXLSPAASXXLGSGRVXXEEXGXKAKGSIRQP 6
MALSSPAFAG AV PAAS LGSGRV + K KG P
Sbjct: 6 MALSSPAFAGKAV--KPAASDVLGSGRVTMRKTVAKPKGPSGSP 47
>dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 43.1 bits (100), Expect = 0.002
Identities = 22/40 (55%), Positives = 26/40 (65%)
Frame = -1
Query: 137 MALSSPAFAGXAVXLSPAASXXLGSGRVXXEEXGXKAKGS 18
MALSSP+FAG AV LSP+AS G+GRV + K S
Sbjct: 6 MALSSPSFAGQAVKLSPSASEITGNGRVSMRKTAAKPVSS 45
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.316 0.131 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 35
effective length of database: 563,377,488
effective search space used: 13521059712
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)