BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= CF774399.x
         (325 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_565824.1|  DNAJ heat shock N-terminal domain-containi...    49   3e-05
ref|NP_566352.1|  DNAJ heat shock N-terminal domain-containi...    45   3e-04
ref|NP_195923.1|  DNAJ heat shock N-terminal domain-containi...    43   0.002
ref|NP_909805.1|  hypothetical protein [Oryza sativa (japoni...    36   0.16 

>ref|NP_565824.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis
           thaliana]|gi|20197532|gb|AAM15117.1| expressed protein
           [Arabidopsis thaliana]|gi|20197993|gb|AAM15345.1|
           expressed protein [Arabidopsis
           thaliana]|gi|21536803|gb|AAM61135.1| DNAJ protein-like
           [Arabidopsis thaliana]
          Length = 112

 Score = 48.5 bits (114), Expect = 3e-05
 Identities = 29/55 (52%), Positives = 29/55 (52%)
 Frame = -2

Query: 324 LILGXXXXXXXXXXXXAPRKVXVAXHPDAGGSXFLASXXXPPPXVMLGXXKXSGS 160
           LILG            A RKV VA HPDAGGS FLAS       VMLG  K SGS
Sbjct: 56  LILGVRESVAAEKVKEAHRKVMVANHPDAGGSHFLASKINEAKDVMLGKTKNSGS 110



>ref|NP_566352.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis
           thaliana]|gi|6682248|gb|AAF23300.1| unknown protein
           [Arabidopsis thaliana]|gi|21593861|gb|AAM65828.1| DNAJ
           protein-like [Arabidopsis
           thaliana]|gi|26450659|dbj|BAC42440.1| unknown protein
           [Arabidopsis thaliana]|gi|28416843|gb|AAO42952.1|
           At3g09700 [Arabidopsis thaliana]
          Length = 112

 Score = 45.1 bits (105), Expect = 3e-04
 Identities = 26/55 (47%), Positives = 29/55 (52%)
 Frame = -2

Query: 324 LILGXXXXXXXXXXXXAPRKVXVAXHPDAGGSXFLASXXXPPPXVMLGXXKXSGS 160
           LILG            A R+V VA HPDAGGS +LAS       +MLG  K SGS
Sbjct: 56  LILGVRESVAAEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDMMLGKTKNSGS 110



>ref|NP_195923.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis
           thaliana]|gi|11282326|pir||T48324 DNAJ protein-like -
           Arabidopsis thaliana|gi|7413580|emb|CAB86070.1| DNAJ
           protein-like [Arabidopsis
           thaliana]|gi|21554024|gb|AAM63105.1| DNAJ protein-like
           [Arabidopsis thaliana]
          Length = 112

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 25/55 (45%), Positives = 28/55 (50%)
 Frame = -2

Query: 324 LILGXXXXXXXXXXXXAPRKVXVAXHPDAGGSXFLASXXXPPPXVMLGXXKXSGS 160
           LILG            A R+V VA HPDAGGS +LAS       +MLG    SGS
Sbjct: 56  LILGVRESVVADKVKEAHRRVMVANHPDAGGSHYLASKINEAKDMMLGKSNNSGS 110



>ref|NP_909805.1| hypothetical protein [Oryza sativa (japonica
           cultivar-group)]|gi|24899456|gb|AAN65026.1| hypothetical
           protein [Oryza sativa (japonica cultivar-group)]
          Length = 96

 Score = 36.2 bits (82), Expect = 0.16
 Identities = 22/55 (40%), Positives = 29/55 (52%)
 Frame = -2

Query: 324 LILGXXXXXXXXXXXXAPRKVXVAXHPDAGGSXFLASXXXPPPXVMLGXXKXSGS 160
           LILG            A ++V VA HPDAGGS ++AS       +++G  K SGS
Sbjct: 41  LILGVRERAAFDKIKEAHKRVMVANHPDAGGSHYIASKINEAKDMLMGKGK-SGS 94



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 83
effective length of database: 472,403,184
effective search space used: 11337676416
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)