BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CF774391.x
(238 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193090.1| expressed protein [Arabidopsis thaliana]|g... 75 3e-13
ref|XP_396273.1| similar to hypothetical protein DKFZp434P0... 32 2.6
gb|AAQ11841.1| maturase K [Araucaria araucana] 31 7.5
gb|AAM46742.1| maturase [Araucaria araucana] 31 7.5
gb|AAH56140.1| PNN protein [Danio rerio] 30 9.8
>ref|NP_193090.1| expressed protein [Arabidopsis thaliana]|gi|7487750|pir||T06656
hypothetical protein T6G15.90 - Arabidopsis
thaliana|gi|4678380|emb|CAB41112.1| putative protein
[Arabidopsis thaliana]|gi|7268057|emb|CAB78396.1|
putative protein [Arabidopsis
thaliana]|gi|22136616|gb|AAM91627.1| unknown protein
[Arabidopsis thaliana]
Length = 210
Score = 75.5 bits (184), Expect = 3e-13
Identities = 39/45 (86%), Positives = 40/45 (88%)
Frame = +2
Query: 2 ALRQKPQEEVAFPPQERKKEVKARGETIETLKGRIXLMEKQQNGK 136
ALRQKPQEEVA QE +KEVKARGETIETLKGRI LMEKQQNGK
Sbjct: 124 ALRQKPQEEVAKAVQELRKEVKARGETIETLKGRINLMEKQQNGK 168
Score = 37.7 bits (86), Expect = 0.061
Identities = 22/60 (36%), Positives = 32/60 (52%)
Frame = +3
Query: 54 KRKLKLGEKPLRHSKGE*X*WRNNKMGRKERXTY*DRXCGIXGGSSXKNKALSSTTRNLT 233
++++K + + KG + G++ + I GGSS KNKALSSTTRNLT
Sbjct: 141 RKEVKARGETIETLKGRINLMEKQQNGKEREIDLLRQSLRILGGSSGKNKALSSTTRNLT 200
>ref|XP_396273.1| similar to hypothetical protein DKFZp434P0316 [Apis mellifera]
Length = 636
Score = 32.3 bits (72), Expect = 2.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 8 RQKPQEEVAFPPQERKKEVKARGETIETLKGRIXLMEK 121
R+ P+E P+ K+E E +ET+KGRI +EK
Sbjct: 363 RETPKETSVESPKPAKEEKGVNSEELETVKGRISKLEK 400
>gb|AAQ11841.1| maturase K [Araucaria araucana]
Length = 495
Score = 30.8 bits (68), Expect = 7.5
Identities = 14/30 (46%), Positives = 19/30 (62%)
Frame = +3
Query: 3 H*DRNRKKKLLFPRKNXKRKLKLGEKPLRH 92
H DR K L+FPRKN ++K+ L + P H
Sbjct: 242 HFDRKIKHILIFPRKNSRKKIWLLKDPFIH 271
>gb|AAM46742.1| maturase [Araucaria araucana]
Length = 510
Score = 30.8 bits (68), Expect = 7.5
Identities = 14/30 (46%), Positives = 19/30 (62%)
Frame = +3
Query: 3 H*DRNRKKKLLFPRKNXKRKLKLGEKPLRH 92
H DR K L+FPRKN ++K+ L + P H
Sbjct: 245 HFDRKIKHILIFPRKNSRKKIWLLKDPFIH 274
>gb|AAH56140.1| PNN protein [Danio rerio]
Length = 678
Score = 30.4 bits (67), Expect = 9.8
Identities = 12/55 (21%), Positives = 23/55 (41%)
Frame = +2
Query: 11 QKPQEEVAFPPQERKKEVKARGETIETLKGRIXLMEKQQNGKXXXXXXXXXXXXN 175
Q+P +E++ PQ K + K GE + +GR + K+ + +
Sbjct: 519 QEPSQELSVEPQAAKTDTKEAGEEADDARGRAKVRAKKSKSRSSSSSSSSSSSSS 573
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 54
effective length of database: 527,366,826
effective search space used: 12656803824
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)