BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Z48426.x
         (249 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_567525.1|  zinc finger (C3HC4-type RING finger) famil...    68   5e-11
ref|NP_199572.1|  zinc finger (C3HC4-type RING finger) famil...    34   0.87 
pir||D71441  hypothetical protein - Arabidopsis thaliana|gi|...    26   4.0  

>ref|NP_567525.1| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis
           thaliana]|gi|15809954|gb|AAL06904.1| AT4g17240/dl4655c
           [Arabidopsis thaliana]|gi|17981651|gb|AAL51109.1|
           AT4g17240/dl4655c [Arabidopsis thaliana]
          Length = 166

 Score = 67.8 bits (164), Expect = 5e-11
 Identities = 33/40 (82%), Positives = 34/40 (84%)
 Frame = -1

Query: 147 AAIRCCLRQVLQIVPKPDRDLKATXQDAPPTLVYSRGLNL 28
           AAIRCCLR VLQ VPKPD DL+AT  DAPPTLVYS GLNL
Sbjct: 56  AAIRCCLRPVLQHVPKPDPDLEATHPDAPPTLVYSPGLNL 95



>ref|NP_199572.1| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis
           thaliana]|gi|9758789|dbj|BAB09087.1| unnamed protein
           product [Arabidopsis
           thaliana]|gi|21553634|gb|AAM62727.1| unknown
           [Arabidopsis thaliana]
          Length = 166

 Score = 33.9 bits (76), Expect = 0.87
 Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -1

Query: 147 AAIRCCLRQVLQIVP--KPDRDLKATXQDAPPTLVYSRGLNL 28
           AAIRC LR  L+     KPD +  A+     PTLVYS  L L
Sbjct: 59  AAIRCFLRPTLETEDDHKPDPEAAASSTPTTPTLVYSSDLEL 100



>pir||D71441 hypothetical protein - Arabidopsis
           thaliana|gi|2245083|emb|CAB10505.1| hypothetical protein
           [Arabidopsis thaliana]|gi|7268476|emb|CAB78727.1|
           hypothetical protein [Arabidopsis thaliana]
          Length = 318

 Score = 26.2 bits (56), Expect(2) = 4.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 112 LEDLTEATTDCSLEEKKTHIKXQK 183
           LED TEATTD S+E +  + + ++
Sbjct: 2   LEDWTEATTDSSVEREDAYERTEE 25




 Score = 24.3 bits (51), Expect(2) = 4.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 159 EDAYXXXXXXXXXXXRVGSKVI*IRIK 239
           EDAY           RVGSKVI +RI+
Sbjct: 17  EDAYERTEEDDEKEERVGSKVIGMRIQ 43



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 58
effective length of database: 519,785,634
effective search space used: 12474855216
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)