BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z48407.x
(374 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g22540.1 68417.m03253 oxysterol-binding family protein s... 551 e-156
At4g22540.2 68417.m03252 oxysterol-binding family protein s... 551 e-156
At4g00150.1 68417.m00015 scarecrow-like transcription facto... 34 0.79
At2g20780.1 68415.m02442 mannitol transporter, putative sim... 34 0.79
At2g20770.1 68415.m02441 lanthionine synthetase C-like fami... 34 0.79
>At4g22540.1 68417.m03253 oxysterol-binding family protein similar to SP|P16258
Oxysterol-binding protein 1 {Oryctolagus cuniculus};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 2782
Score = 551 bits (278), Expect = e-156
Identities = 298/302 (98%), Gaps = 2/302 (0%)
Strand = Plus / Minus
Query: 6 tttatttttattgctgacatatatttttttaataattaaatacaaatggattacaaggaa 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2758 tttatttttattgctgacatatatttttttaataattaaatacaaatggattacaaggaa 2699
Query: 66 ctt-tccaatgtaag-ccaacctactacattaatctcaactatttgacgagggagataga 123
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2698 cttgtccaatgtaagaccaacctactacattaatctcaactatttgacgagggagataga 2639
Query: 124 gaattgaagagaaggatataagactttacagtgacactctaagactcaaaaggaggacgt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2638 gaattgaagagaaggatataagactttacagtgacactctaagactcaaaaggaggacgt 2579
Query: 184 cttttaggagatagaaccaaagcctccttctgatatttgttctatgccctctttcaagca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2578 cttttaggagatagaaccaaagcctccttctgatatttgttctatgccctctttcaagca 2519
Query: 244 ggaaactgaaaccatggtcgaaagatgggtgctgccgtgttaacaactccaatatggtcc 303
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2518 gaaaactgaaaccatggtcgaaagatgggtgctgccgtgtaaacaactccaatatggtcc 2459
Query: 304 ga 305
||
Sbjct: 2458 ga 2457
>At4g22540.2 68417.m03252 oxysterol-binding family protein similar to SP|P16258
Oxysterol-binding protein 1 {Oryctolagus cuniculus};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 2202
Score = 551 bits (278), Expect = e-156
Identities = 298/302 (98%), Gaps = 2/302 (0%)
Strand = Plus / Minus
Query: 6 tttatttttattgctgacatatatttttttaataattaaatacaaatggattacaaggaa 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2178 tttatttttattgctgacatatatttttttaataattaaatacaaatggattacaaggaa 2119
Query: 66 ctt-tccaatgtaag-ccaacctactacattaatctcaactatttgacgagggagataga 123
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2118 cttgtccaatgtaagaccaacctactacattaatctcaactatttgacgagggagataga 2059
Query: 124 gaattgaagagaaggatataagactttacagtgacactctaagactcaaaaggaggacgt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2058 gaattgaagagaaggatataagactttacagtgacactctaagactcaaaaggaggacgt 1999
Query: 184 cttttaggagatagaaccaaagcctccttctgatatttgttctatgccctctttcaagca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1998 cttttaggagatagaaccaaagcctccttctgatatttgttctatgccctctttcaagca 1939
Query: 244 ggaaactgaaaccatggtcgaaagatgggtgctgccgtgttaacaactccaatatggtcc 303
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1938 gaaaactgaaaccatggtcgaaagatgggtgctgccgtgtaaacaactccaatatggtcc 1879
Query: 304 ga 305
||
Sbjct: 1878 ga 1877
>At4g00150.1 68417.m00015 scarecrow-like transcription factor 6 (SCL6)
Length = 2088
Score = 34.2 bits (17), Expect = 0.79
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 26 atatttttttaataatt 42
|||||||||||||||||
Sbjct: 1891 atatttttttaataatt 1875
>At2g20780.1 68415.m02442 mannitol transporter, putative similar to mannitol
transporter [Apium graveolens var. dulce] GI:12004316;
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 2363
Score = 34.2 bits (17), Expect = 0.79
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 231 cctctttcaagcaggaaactg 251
||||| |||||||||||||||
Sbjct: 2330 cctctatcaagcaggaaactg 2350
>At2g20770.1 68415.m02441 lanthionine synthetase C-like family protein contains
Pfam domain, PF05147: Lanthionine synthetase C-like
protein
Length = 2519
Score = 34.2 bits (17), Expect = 0.79
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 231 cctctttcaagcaggaaactg 251
||||| |||||||||||||||
Sbjct: 1141 cctctatcaagcaggaaactg 1121
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,842
Number of Sequences: 29161
Number of extensions: 10842
Number of successful extensions: 818
Number of sequences better than 10.0: 20
length of query: 374
length of database: 44,058,232
effective HSP length: 17
effective length of query: 357
effective length of database: 43,562,495
effective search space: 15551810715
effective search space used: 15551810715
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)