BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Z48387.x
         (267 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM19840.1|  AT5g60600/mup24_10 [Arabidopsis thaliana]          39   0.035
ref|NP_200868.2|  1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosp...    39   0.035
ref|NP_851233.1|  1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosp...    39   0.035
dbj|BAB09833.1|  GcpE protein [Arabidopsis thaliana]               39   0.035
gb|AAL91150.1|  GcpE protein [Arabidopsis thaliana]|gi|34365...    39   0.035
prf||1808262A  thermostable pullulanase                            33   1.5  
ref|NP_563909.1|  C4-dicarboxylate transporter/malic acid tr...    30   9.5  

>gb|AAM19840.1| AT5g60600/mup24_10 [Arabidopsis thaliana]
          Length = 741

 Score = 38.5 bits (88), Expect = 0.035
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = -2

Query: 245 GLIKEHVRWVDPPVADE 195
           GLIKEH RWVDPPVADE
Sbjct: 725 GLIKEHGRWVDPPVADE 741



>ref|NP_200868.2| 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, putative /
           GcpE family protein [Arabidopsis
           thaliana]|gi|27462472|gb|AAO15446.1| GcpE [Arabidopsis
           thaliana]
          Length = 740

 Score = 38.5 bits (88), Expect = 0.035
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = -2

Query: 245 GLIKEHVRWVDPPVADE 195
           GLIKEH RWVDPPVADE
Sbjct: 724 GLIKEHGRWVDPPVADE 740



>ref|NP_851233.1| 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, putative /
           GcpE family protein [Arabidopsis thaliana]
          Length = 741

 Score = 38.5 bits (88), Expect = 0.035
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = -2

Query: 245 GLIKEHVRWVDPPVADE 195
           GLIKEH RWVDPPVADE
Sbjct: 725 GLIKEHGRWVDPPVADE 741



>dbj|BAB09833.1| GcpE protein [Arabidopsis thaliana]
          Length = 716

 Score = 38.5 bits (88), Expect = 0.035
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = -2

Query: 245 GLIKEHVRWVDPPVADE 195
           GLIKEH RWVDPPVADE
Sbjct: 700 GLIKEHGRWVDPPVADE 716



>gb|AAL91150.1| GcpE protein [Arabidopsis thaliana]|gi|34365569|gb|AAQ65096.1|
           At5g60600 [Arabidopsis thaliana]
          Length = 741

 Score = 38.5 bits (88), Expect = 0.035
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = -2

Query: 245 GLIKEHVRWVDPPVADE 195
           GLIKEH RWVDPPVADE
Sbjct: 725 GLIKEHGRWVDPPVADE 741



>prf||1808262A thermostable pullulanase
          Length = 658

 Score = 33.1 bits (74), Expect = 1.5
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
 Frame = +1

Query: 67  FGHLSKMNDAIHNKQ---------MIYTHKYIYXXSQFSKNGPPIFFRFEIYSSATGGS 216
           +  + ++  AIH  Q         ++Y H YI   S F K  P  +FR++ Y + + G+
Sbjct: 258 YARIRELKRAIHTLQSNGIRVIMDVVYNHVYIRDQSSFEKIVPGYYFRYDAYGNPSNGT 316



>ref|NP_563909.1| C4-dicarboxylate transporter/malic acid transport family protein
           [Arabidopsis thaliana]|gi|8778644|gb|AAF79652.1|
           F5O11.23 [Arabidopsis
           thaliana]|gi|9502395|gb|AAF88102.1| T12C24.3
           [Arabidopsis thaliana]|gi|15983366|gb|AAL11551.1|
           At1g12480/T12C24_4 [Arabidopsis
           thaliana]|gi|27363274|gb|AAO11556.1| At1g12480/T12C24_4
           [Arabidopsis thaliana]
          Length = 556

 Score = 30.4 bits (67), Expect = 9.5
 Identities = 14/44 (31%), Positives = 19/44 (42%)
 Frame = +1

Query: 127 KYIYXXSQFSKNGPPIFFRFEIYSSATGGSTQRTCSLIRPSEHL 258
           KY++        GP  F   +IY     G  +R C +  PS HL
Sbjct: 290 KYLHPAIWCVFMGPYFFLELKIYGQWLSGGKRRLCKVANPSSHL 333



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 64
effective length of database: 508,413,846
effective search space used: 12201932304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)