BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CB518222.x
(1354 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing... 1247 0.0
At4g31170.2 68417.m04425 protein kinase family protein cont... 38 0.19
At4g31170.1 68417.m04424 protein kinase family protein cont... 38 0.19
At5g67310.1 68418.m08488 cytochrome P450 family protein 36 0.75
At5g45370.3 68418.m05573 nodulin-related / integral membran... 36 0.75
>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein contains
bromodomain, INTERPRO:IPR001487; contains prenyl group
binding site (CAAX box) Prosite:PS00294
Length = 2310
Score = 1247 bits (629), Expect = 0.0
Identities = 674/684 (98%), Gaps = 8/684 (1%)
Strand = Plus / Plus
Query: 1 gaagtactggacttcagcagggttgtatacttgagca-tcagcag----aaatncagaag 55
||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||||
Sbjct: 933 gaagtactggacttcagcagggttgtatact-gagcaatcagcagcagaaaatacagaag 991
Query: 56 atggtggaaaggc-tccncaa-gcagaagagtcataaacgccatggaaggcaccacaaga 113
||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 992 atggtggaaaggcatccacaaagcagaagagtcataaacgccatggaaggcaccacaaga 1051
Query: 114 gtgattgcatgtgtgcgatatgtgttttgaagcgtcgtaaaagagaacgtgaacgagatt 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 gtgattgcatgtgtgcgatatgtgttttgaagcgtcgtaaaagagaacgtgaacgagatt 1111
Query: 174 ctggagctcaagaggagtcttcacctgcgggaagtccgtctgtggataattcatcagtaa 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1112 ctggagctcaagaggagtcttcacctgcgggaagtccgtctgtggataattcatcagtaa 1171
Query: 234 acatgggtgaggacatggatattgatgttgacaagaaacctgaacaagaaaaaacagaaa 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1172 acatgggtgaggacatggatattgatgttgacaagaaacctgaacaagaaaaaacagaaa 1231
Query: 294 tcgtggaactagatagtccggtgtcaaaaacacaaagagtgattgaaaacaaacaagagg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1232 tcgtggaactagatagtccggtgtcaaaaacacaaagagtgattgaaaacaaacaagagg 1291
Query: 354 tggaggaagaggaaaacgtcgaagtggagagtgaaaataaaaccaaagctaatgtagagg 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1292 tggaggaagaggaaaacgtcgaagtggagagtgaaaataaaaccaaagctaatgtagagg 1351
Query: 414 acaagactcagtcgattgatagatcaatggaagagactggcgatgagcctgtgaatagtg 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1352 acaagactcagtcgattgatagatcaatggaagagactggcgatgagcctgtgaatagtg 1411
Query: 474 ctgcagagaaattggttgttttagcttcccttgaaggtccaaaatcgactcagaatgagg 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1412 ctgcagagaaattggttgttttagcttcccttgaaggtccaaaatcgactcagaatgagg 1471
Query: 534 aagaagagaaggaaaaacgacttcaagagcaaaagaaacggctggagttagagcgtaaag 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1472 aagaagagaaggaaaaacgacttcaagagcaaaagaaacggctggagttagagcgtaaag 1531
Query: 594 aatggagaatgaagatgcaagaaaagttccaagtcagaaacccgcagcttctaagtctct 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1532 aatggagaatgaagatgcaagaaaagttccaagtcagaaacccgcagcttctaagtctct 1591
Query: 654 gtgaaactctcttccctaatgaca 677
||||||||||||||||||||||||
Sbjct: 1592 gtgaaactctcttccctaatgaca 1615
Score = 1247 bits (629), Expect = 0.0
Identities = 674/684 (98%), Gaps = 8/684 (1%)
Strand = Plus / Plus
Query: 678 gaagtactggacttcagcagggttgtatacttgagca-tcagcag----aaatncagaag 732
||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||||
Sbjct: 933 gaagtactggacttcagcagggttgtatact-gagcaatcagcagcagaaaatacagaag 991
Query: 733 atggtggaaaggc-tccncaa-gcagaagagtcataaacgccatggaaggcaccacaaga 790
||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 992 atggtggaaaggcatccacaaagcagaagagtcataaacgccatggaaggcaccacaaga 1051
Query: 791 gtgattgcatgtgtgcgatatgtgttttgaagcgtcgtaaaagagaacgtgaacgagatt 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 gtgattgcatgtgtgcgatatgtgttttgaagcgtcgtaaaagagaacgtgaacgagatt 1111
Query: 851 ctggagctcaagaggagtcttcacctgcgggaagtccgtctgtggataattcatcagtaa 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1112 ctggagctcaagaggagtcttcacctgcgggaagtccgtctgtggataattcatcagtaa 1171
Query: 911 acatgggtgaggacatggatattgatgttgacaagaaacctgaacaagaaaaaacagaaa 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1172 acatgggtgaggacatggatattgatgttgacaagaaacctgaacaagaaaaaacagaaa 1231
Query: 971 tcgtggaactagatagtccggtgtcaaaaacacaaagagtgattgaaaacaaacaagagg 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1232 tcgtggaactagatagtccggtgtcaaaaacacaaagagtgattgaaaacaaacaagagg 1291
Query: 1031 tggaggaagaggaaaacgtcgaagtggagagtgaaaataaaaccaaagctaatgtagagg 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1292 tggaggaagaggaaaacgtcgaagtggagagtgaaaataaaaccaaagctaatgtagagg 1351
Query: 1091 acaagactcagtcgattgatagatcaatggaagagactggcgatgagcctgtgaatagtg 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1352 acaagactcagtcgattgatagatcaatggaagagactggcgatgagcctgtgaatagtg 1411
Query: 1151 ctgcagagaaattggttgttttagcttcccttgaaggtccaaaatcgactcagaatgagg 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1412 ctgcagagaaattggttgttttagcttcccttgaaggtccaaaatcgactcagaatgagg 1471
Query: 1211 aagaagagaaggaaaaacgacttcaagagcaaaagaaacggctggagttagagcgtaaag 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1472 aagaagagaaggaaaaacgacttcaagagcaaaagaaacggctggagttagagcgtaaag 1531
Query: 1271 aatggagaatgaagatgcaagaaaagttccaagtcagaaacccgcagcttctaagtctct 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1532 aatggagaatgaagatgcaagaaaagttccaagtcagaaacccgcagcttctaagtctct 1591
Query: 1331 gtgaaactctcttccctaatgaca 1354
||||||||||||||||||||||||
Sbjct: 1592 gtgaaactctcttccctaatgaca 1615
>At4g31170.2 68417.m04425 protein kinase family protein contains eukaryotic
protein kinase domain, INTERPRO:IPR000719
Length = 1892
Score = 38.2 bits (19), Expect = 0.19
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 344 aaacaagaggtggaggaagagga 366
||||||||||||||||| |||||
Sbjct: 38 aaacaagaggtggaggaggagga 16
Score = 38.2 bits (19), Expect = 0.19
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1021 aaacaagaggtggaggaagagga 1043
||||||||||||||||| |||||
Sbjct: 38 aaacaagaggtggaggaggagga 16
>At4g31170.1 68417.m04424 protein kinase family protein contains eukaryotic
protein kinase domain, INTERPRO:IPR000719
Length = 1794
Score = 38.2 bits (19), Expect = 0.19
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 344 aaacaagaggtggaggaagagga 366
||||||||||||||||| |||||
Sbjct: 49 aaacaagaggtggaggaggagga 27
Score = 38.2 bits (19), Expect = 0.19
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1021 aaacaagaggtggaggaagagga 1043
||||||||||||||||| |||||
Sbjct: 49 aaacaagaggtggaggaggagga 27
>At5g67310.1 68418.m08488 cytochrome P450 family protein
Length = 2831
Score = 36.2 bits (18), Expect = 0.75
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 565 aaagaaacggctggagtt 582
||||||||||||||||||
Sbjct: 588 aaagaaacggctggagtt 571
Score = 36.2 bits (18), Expect = 0.75
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1242 aaagaaacggctggagtt 1259
||||||||||||||||||
Sbjct: 588 aaagaaacggctggagtt 571
>At5g45370.3 68418.m05573 nodulin-related / integral membrane family protein
contains Pfam profile:PF00892 integral membrane protein
DUF6
Length = 1224
Score = 36.2 bits (18), Expect = 0.75
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 530 gaggaagaagagaaggaa 547
||||||||||||||||||
Sbjct: 98 gaggaagaagagaaggaa 81
Score = 36.2 bits (18), Expect = 0.75
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1207 gaggaagaagagaaggaa 1224
||||||||||||||||||
Sbjct: 98 gaggaagaagagaaggaa 81
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 60,632
Number of Sequences: 29161
Number of extensions: 60632
Number of successful extensions: 1944
Number of sequences better than 10.0: 37
length of query: 1354
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1336
effective length of database: 43,533,334
effective search space: 58160534224
effective search space used: 58160534224
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)