BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AB028227.x
         (1596 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||B96619  protein T30E16.5 [imported] - Arabidopsis thali...    94   1e-17
sp|O15974|OPS2_PATYE  Rhodopsin, G0-coupled (G0-rhodopsin)|g...    37   0.97 
gb|AAA81668.1|  ATPase subunit 6                                   37   1.7  
ref|NP_065432.2|  NADH dehydrogenase subunit 6 [Schistosoma ...    34   8.2  

>pir||B96619 protein T30E16.5 [imported] - Arabidopsis
           thaliana|gi|8778736|gb|AAF79744.1| T30E16.5 [Arabidopsis
           thaliana]
          Length = 180

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 45/46 (97%), Positives = 46/46 (99%)
 Frame = +2

Query: 575 FHLYCLLYLTKKIRKSKHIINKLRRNMLFVRFFAIKLSSHLLPLVS 712
           FHLYCLLYLTKKIRKSKHIINKLRRNMLFVRFFAIKLSSHLLPLV+
Sbjct: 46  FHLYCLLYLTKKIRKSKHIINKLRRNMLFVRFFAIKLSSHLLPLVN 91




 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 33/51 (64%), Positives = 36/51 (69%)
 Frame = +1

Query: 79  MTKLCI*G*TNASILITKRNYVNI*RVGYRSCENVNACFSPLTKSHKKSQT 231
           MTKLC        I++  R+     RVGYRSCENVNACFSPLTKSHKKSQT
Sbjct: 1   MTKLCF-SFLRKGIVLKYRS-----RVGYRSCENVNACFSPLTKSHKKSQT 45




 Score = 49.7 bits (117), Expect(2) = 9e-08
 Identities = 33/76 (43%), Positives = 42/76 (54%), Gaps = 10/76 (13%)
 Frame = +2

Query: 884  CPLFITLKKKYMKMMHFIGLNSEPTEYLYQEIL------HKIGLIT--NIYFE--APNQN 1033
            C L++T  KK  K  H I  N      L+          H + L+    I+++  APNQN
Sbjct: 50   CLLYLT--KKIRKSKHII--NKLRRNMLFVRFFAIKLSSHLLPLVNLKKIFYKDKAPNQN 105

Query: 1034 FMCLCQGRIGHDRLIV 1081
            FMCLCQGRIGHDRLI+
Sbjct: 106  FMCLCQGRIGHDRLIL 121




 Score = 42.0 bits (97), Expect(2) = 3e-07
 Identities = 20/21 (95%), Positives = 21/21 (99%)
 Frame = +3

Query: 1473 RLTLIMTLILSTFLVDNITPM 1535
            +LTLIMTLILSTFLVDNITPM
Sbjct: 160  KLTLIMTLILSTFLVDNITPM 180




 Score = 36.6 bits (83), Expect(2) = 3e-07
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +2

Query: 1328 LKSSATKVIKVKKQYPN 1378
            LKSSATKVIKVKKQYPN
Sbjct: 134  LKSSATKVIKVKKQYPN 150




 Score = 30.8 bits (68), Expect(2) = 9e-08
 Identities = 13/14 (92%), Positives = 14/14 (99%)
 Frame = +3

Query: 1152 LYFTSFSDIIDPLV 1193
            LYFTSFSDIIDPL+
Sbjct: 121  LYFTSFSDIIDPLL 134



>sp|O15974|OPS2_PATYE Rhodopsin, G0-coupled (G0-rhodopsin)|gi|2398859|dbj|BAA22218.1|
            Go-coupled rhodopsin [Mizuhopecten yessoensis]
          Length = 399

 Score = 37.4 bits (85), Expect = 0.97
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 1026 FGASKYILVIRPILCKISWYRYSVGSEFKPIKCIIFIYFF 907
            FG S Y++ + P+ C ++WY + +G     I  I+ +Y F
Sbjct: 155  FGWSSYVIEVVPVSCSVNWYGHGLGDVSYTISVIVAVYVF 194



>gb|AAA81668.1| ATPase subunit 6
          Length = 233

 Score = 36.6 bits (83), Expect = 1.7
 Identities = 15/41 (36%), Positives = 26/41 (62%)
 Frame = -1

Query: 1452 CRLVL*ITLLLYYFNFCFFILLYLLFGYCFLTFITFVALLF 1330
            C L+    LLL +F+F +F  ++ +F +CFL F+ F+  +F
Sbjct: 149  CNLLSSHFLLLMFFDFLYFFFVFFIF-FCFLDFLVFILFIF 188



>ref|NP_065432.2| NADH dehydrogenase subunit 6 [Schistosoma
            mekongi]|gi|12248365|gb|AAG12189.2| NADH dehydrogenase
            subunit 6 [Schistosoma mekongi]
          Length = 153

 Score = 34.3 bits (77), Expect = 8.2
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 1428 LLLYYFNFCFFILLYLLFGYCFLTFITFVALLFNYRDSVLISHC 1297
            L+ ++F FCFF L Y  FG C + +  +  L  +Y   V + +C
Sbjct: 90   LVFFFFFFCFFFLDYSFFGVCLVEYSYY--LCSDYESVVYVFYC 131



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 131
effective length of database: 381,428,880
effective search space used: 152571552000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)