BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AY091152.x
(1940 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20690.1 68414.m02591 expressed protein 3846 0.0
At1g20360.1 68414.m02540 F-box protein-related contains wea... 176 5e-43
At1g20240.1 68414.m02528 hypothetical protein 161 3e-38
At1g20730.1 68414.m02597 expressed protein contains TIGRFAM... 135 2e-30
At1g20940.1 68414.m02622 F-box family protein contains Pfam... 133 6e-30
>At1g20690.1 68414.m02591 expressed protein
Length = 1940
Score = 3846 bits (1940), Expect = 0.0
Identities = 1940/1940 (100%)
Strand = Plus / Plus
Query: 1 agaatttgtcctctctatataacaacatcatctgtaaacaagtgaaacaaacaaatatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatttgtcctctctatataacaacatcatctgtaaacaagtgaaacaaacaaatatat 60
Query: 61 tcgtatcaacgacaagcaaaaacagacgtagggggaagttctcacgttgatataactatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcgtatcaacgacaagcaaaaacagacgtagggggaagttctcacgttgatataactatg 120
Query: 121 atcctcctggatgatttacctttggatcttctcgacatgattctcttcagatcagaaccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atcctcctggatgatttacctttggatcttctcgacatgattctcttcagatcagaaccc 180
Query: 181 caagctatggcaatgatacgatgtacaaacaaatctttcaaatcgtatttaactgaccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caagctatggcaatgatacgatgtacaaacaaatctttcaaatcgtatttaactgaccca 240
Query: 241 agatttggacctcagtatccttcgtgggtcagacccactttgattaacatttggagctct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agatttggacctcagtatccttcgtgggtcagacccactttgattaacatttggagctct 300
Query: 301 aacaaatctctcatcttctgccaacctttggtctattcatgtgattatatgtcactagga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aacaaatctctcatcttctgccaacctttggtctattcatgtgattatatgtcactagga 360
Query: 361 aacaaagcagagttcattaacgatcgatgttacattttcggctcatgctccggccttctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aacaaagcagagttcattaacgatcgatgttacattttcggctcatgctccggccttctc 420
Query: 421 ctactatacattggtcacttcttcatcgtaaatcccttgacaaagaaatttcgaatcgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctactatacattggtcacttcttcatcgtaaatcccttgacaaagaaatttcgaatcgtg 480
Query: 481 gatcactctgggtcgaagcttctgcctcacatagttggtggtgtcgaaaaggctgatcct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gatcactctgggtcgaagcttctgcctcacatagttggtggtgtcgaaaaggctgatcct 540
Query: 541 tatgaccccgatggtccccttgttcgtacagagagagcgatgtgcgtcggtttcgtggta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tatgaccccgatggtccccttgttcgtacagagagagcgatgtgcgtcggtttcgtggta 600
Query: 601 gatcaatgttgaatcaccaagatattcaagatcgtctgcatacttgagatggaaacaaag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gatcaatgttgaatcaccaagatattcaagatcgtctgcatacttgagatggaaacaaag 660
Query: 661 tacagatttgaaatcagcgacggagattcttggaggttatcgaaaacgaccctcacgacc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tacagatttgaaatcagcgacggagattcttggaggttatcgaaaacgaccctcacgacc 720
Query: 721 agctccaaaagtggtctcaagaagcggatgaaacctgtttacgtagatggcaatcttcac 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 agctccaaaagtggtctcaagaagcggatgaaacctgtttacgtagatggcaatcttcac 780
Query: 781 tggttgagaaacgactggagcatcatagcgttcaatcccgagacagagcaagcacgactg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tggttgagaaacgactggagcatcatagcgttcaatcccgagacagagcaagcacgactg 840
Query: 841 attccttgtagcttccatccaacaccggatacgaaggtgcttttcgcagcaaacgatgag 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 attccttgtagcttccatccaacaccggatacgaaggtgcttttcgcagcaaacgatgag 900
Query: 901 accaatctcctgacattgatatcagggacgaaaaaagcaatctcagtttacacactactc 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 accaatctcctgacattgatatcagggacgaaaaaagcaatctcagtttacacactactc 960
Query: 961 gggtatcacaagtggacactcgcaagccagttcaagaacgtatcaatggaggaatcagat 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 gggtatcacaagtggacactcgcaagccagttcaagaacgtatcaatggaggaatcagat 1020
Query: 1021 cttgaatgttggaacgtggttgcatatgacggcaagtgtctagtggtgagggagaaaatg 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 cttgaatgttggaacgtggttgcatatgacggcaagtgtctagtggtgagggagaaaatg 1080
Query: 1081 atacgttctagtgacattgagcttcatgtgtacgacatggaagctgacagttggggagtt 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 atacgttctagtgacattgagcttcatgtgtacgacatggaagctgacagttggggagtt 1140
Query: 1141 tttgagacggccaaatgttggtcccaagacttctacaagtttaagccctcctttttctct 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 tttgagacggccaaatgttggtcccaagacttctacaagtttaagccctcctttttctct 1200
Query: 1201 attgaggatgacgagcagacaaaggtgcttgtaccttctgatgaccaacgcctttcctat 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 attgaggatgacgagcagacaaaggtgcttgtaccttctgatgaccaacgcctttcctat 1260
Query: 1261 ctaactacaattatggaaatgatacaaccaggtaaactatctcattgtttgattattttg 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 ctaactacaattatggaaatgatacaaccaggtaaactatctcattgtttgattattttg 1320
Query: 1321 agtcaatttattattcttaatcatcctactcccttgctcatctctttctaactgattcct 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 agtcaatttattattcttaatcatcctactcccttgctcatctctttctaactgattcct 1380
Query: 1381 tgaaccagtaaaagagactcacaaagatgactagtcaaacaatcttcagaacgacttacc 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 tgaaccagtaaaagagactcacaaagatgactagtcaaacaatcttcagaacgacttacc 1440
Query: 1441 catccggtcattatccttagctttgcggggtagatggattaagcatttcatccaaacatt 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 catccggtcattatccttagctttgcggggtagatggattaagcatttcatccaaacatt 1500
Query: 1501 attgatgcattttctaaagatcatgttccaaggcattatgattaacttcatatataataa 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 attgatgcattttctaaagatcatgttccaaggcattatgattaacttcatatataataa 1560
Query: 1561 aatcaatcattactaatgtttaaactacacatcaaattctactacacttaatcacagtaa 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 aatcaatcattactaatgtttaaactacacatcaaattctactacacttaatcacagtaa 1620
Query: 1621 cgtcttacataatcaaatctcattaataaaaatcccaatcaggagcagagagtgtgagaa 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 cgtcttacataatcaaatctcattaataaaaatcccaatcaggagcagagagtgtgagaa 1680
Query: 1681 agagagcatcagcagaccagtagttatcaacaagcgaacttacctgtgaagttcagagat 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 agagagcatcagcagaccagtagttatcaacaagcgaacttacctgtgaagttcagagat 1740
Query: 1741 caagtgtatcccatcatttgctctccctctctctttgcaccataagttatctaatcctaa 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 caagtgtatcccatcatttgctctccctctctctttgcaccataagttatctaatcctaa 1800
Query: 1801 ctcagaaaagactgtaatcaattcaagcaataacactacacaaacggcaaaaaaccttaa 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 ctcagaaaagactgtaatcaattcaagcaataacactacacaaacggcaaaaaaccttaa 1860
Query: 1861 tctaatcgaacaaacatataaagactacaaagcaaagcaagaggatccatggacgataaa 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1861 tctaatcgaacaaacatataaagactacaaagcaaagcaagaggatccatggacgataaa 1920
Query: 1921 aagatcaaaatgttatcctt 1940
||||||||||||||||||||
Sbjct: 1921 aagatcaaaatgttatcctt 1940
>At1g20360.1 68414.m02540 F-box protein-related contains weak hit to Pfam
profile PF00646: F-box domain
Length = 1241
Score = 176 bits (89), Expect = 5e-43
Identities = 194/229 (84%)
Strand = Plus / Plus
Query: 619 aagatattcaagatcgtctgcatacttgagatggaaacaaagtacagatttgaaatcagc 678
|||| |||||||||||||||||||||||||||||| || | ||| ||| ||||||| |
Sbjct: 526 aagagattcaagatcgtctgcatacttgagatggagacgaggtatgaattcgaaatcaac 585
Query: 679 gacggagattcttggaggttatcgaaaacgaccctcacgaccagctccaaaagtggtctc 738
||||| ||||| ||||| ||||| |||||||| ||| | ||| ||||||| ||||
Sbjct: 586 gacggcgattcatggagattatcaaaaacgactatcaatgctgactcaaaaagtgatctc 645
Query: 739 aagaagcggatgaaacctgtttacgtagatggcaatcttcactggttgagaaacgactgg 798
| ||| ||||||||||||||||| | || |||| |||||| ||||||||||||||| ||
Sbjct: 646 accaagtggatgaaacctgtttacttggaaggcactcttcattggttgagaaacgacggg 705
Query: 799 agcatcatagcgttcaatcccgagacagagcaagcacgactgattcctt 847
||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 706 agcatcatagctttcaatcccgagacagagcaagcacgcttgattcctt 754
Score = 63.9 bits (32), Expect = 5e-09
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 1103 ttcatgtgtacgacatggaagctgacagttggggagtttt 1142
|||||||||||||||||||| || ||||||||||||||||
Sbjct: 1012 ttcatgtgtacgacatggaaactaacagttggggagtttt 1051
Score = 60.0 bits (30), Expect = 7e-08
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 385 cgatgttacattttcggctcatgctccggccttctcctactatacattggtcacttcttc 444
||||||||||| || || |||||||| |||||||||||||| ||||| ||| | |||||
Sbjct: 328 cgatgttacatgttggggtcatgctctggccttctcctactgtacatcggtggcctcttc 387
Query: 445 atcgtaaatcccttgacaaaga 466
||| ||||||| | |||||||
Sbjct: 388 gtcgcaaatcccctcacaaaga 409
Score = 60.0 bits (30), Expect = 7e-08
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 919 atatcagggacgaaaaaagcaatctcagtttacacactactcgggtatcacaagtggaca 978
||||||||||| ||| || ||||||||||||||||| |||||||| ||| ||| |||
Sbjct: 829 atatcagggacaaaacaaacaatctcagtttacacattactcgggaatctcaaatggggt 888
Query: 979 ctcgcaagccagttcaagaacgtatc 1004
||||| || | | |||||||||||||
Sbjct: 889 ctcgctaggcggatcaagaacgtatc 914
Score = 38.2 bits (19), Expect = 0.27
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 571 gagagagcgatgtgcgtcggttt 593
||||||||||||||||| |||||
Sbjct: 490 gagagagcgatgtgcgttggttt 512
>At1g20240.1 68414.m02528 hypothetical protein
Length = 1701
Score = 161 bits (81), Expect = 3e-38
Identities = 195/233 (83%)
Strand = Plus / Plus
Query: 615 caccaagatattcaagatcgtctgcatacttgagatggaaacaaagtacagatttgaaat 674
||||| || ||||||||||||||||||||| |||| | |||| ||| ||||| || ||
Sbjct: 36 caccatgagattcaagatcgtctgcatactcgagacgcaaacgctgtatagattcgagat 95
Query: 675 cagcgacggagattcttggaggttatcgaaaacgaccctcacgaccagctccaaaagtgg 734
|||||||||| | || ||||| |||||| |||||||| |||| | ||||| |||||||
Sbjct: 96 cagcgacggatactcatggagattatcggaaacgaccatcacccctagctcaaaaagtga 155
Query: 735 tctcaagaagcggatgaaacctgtttacgtagatggcaatcttcactggttgagaaacga 794
||||| || || ||||||||||||||| | || || |||||| ||||||||||||||
Sbjct: 156 tctcacgacgctaatgaaacctgtttacttggacaacactcttcattggttgagaaacga 215
Query: 795 ctggagcatcatagcgttcaatcccgagacagagcaagcacgactgattcctt 847
||||||||||||| || ||||||||||||||| ||||||||||||||||||
Sbjct: 216 tgggagcatcatagcttttaatcccgagacagaggaagcacgactgattcctt 268
Score = 99.6 bits (50), Expect = 9e-20
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 774 tcttcactggttgagaaacgactggagcatcatagcgttcaatcccgagacagagcaagc 833
|||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 1170 tcttcattggttgagaaacgatgggagcatcataacgttcaatcccgagacagagcaagc 1229
Query: 834 acgactgattcctt 847
||| |||||||||
Sbjct: 1230 acgcttgattcctt 1243
Score = 89.7 bits (45), Expect = 8e-17
Identities = 114/137 (83%)
Strand = Plus / Plus
Query: 387 atgttacattttcggctcatgctccggccttctcctactatacattggtcacttcttcat 446
|||||||||||| ||||| ||||| ||||||||||||||||| |||||| | |||| |
Sbjct: 810 atgttacatttttggctcctgctcgggccttctcctactatatattggtggcctctttgt 869
Query: 447 cgtaaatcccttgacaaagaaatttcgaatcgtggatcactctgggtcgaagcttctgcc 506
|||||||||| | ||||||| |||||| | | || |||||||| || |||||||||||
Sbjct: 870 cgtaaatcccctcacaaagaggtttcgactttttgaacactctggctcaaagcttctgcc 929
Query: 507 tcacatagttggtggtg 523
| |||||||||||||
Sbjct: 930 tataatagttggtggtg 946
Score = 58.0 bits (29), Expect = 3e-07
Identities = 125/157 (79%)
Strand = Plus / Plus
Query: 919 atatcagggacgaaaaaagcaatctcagtttacacactactcgggtatcacaagtggaca 978
||||| ||||||||| ||| ||| ||||||||||||||||||| || | |||||
Sbjct: 1315 atatcggggacgaaagaagaaatttcagtttacacactactcgacaattctgaatggacc 1374
Query: 979 ctcgcaagccagttcaagaacgtatcaatggaggaatcagatcttgaatgttggaacgtg 1038
|| | |||||| ||||||||||||| ||| ||||| || |||| ||| |||||| |
Sbjct: 1375 gtcaccagccagatcaagaacgtatctatgaaggaaagtgaacttgtatgctggaacatt 1434
Query: 1039 gttgcatatgacggcaagtgtctagtggtgagggaga 1075
|||| || ||||||||| |||||||||||||||||
Sbjct: 1435 gttgtgtacgacggcaagcatctagtggtgagggaga 1471
Score = 48.1 bits (24), Expect = 3e-04
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1103 ttcatgtgtacgacatggaagctgacagttggggagtttt 1142
|||||||||||||||||||| || ||| |||| |||||||
Sbjct: 521 ttcatgtgtacgacatggaaactaacacttggagagtttt 560
Score = 48.1 bits (24), Expect = 3e-04
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 312 catcttctgccaacctttggtctattcatgtgattatatgtcac 355
|||||| |||||||||||||||| |||| | |||| ||||||||
Sbjct: 735 catcttttgccaacctttggtctcttcaagagattctatgtcac 778
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 1103 ttcatgtgtacgacatggaagctgacagttggggagtt 1140
||||||||||||||||||||| | | ||||||| ||||
Sbjct: 1496 ttcatgtgtacgacatggaagttaaaagttgggaagtt 1533
Score = 42.1 bits (21), Expect = 0.017
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 909 cctgacattgatatcagggacgaaaaaagcaatctcagtttacacactactcg 961
|||||| ||||||||| |||| |||| ||| |||||||||||||||||||
Sbjct: 327 cctgactttgatatcaaagacggtaaaaagaatatcagtttacacactactcg 379
Score = 36.2 bits (18), Expect = 1.1
Identities = 36/42 (85%)
Strand = Plus / Plus
Query: 1235 cttctgatgaccaacgcctttcctatctaactacaattatgg 1276
||||| ||||| ||||| || ||||||||||| | |||||||
Sbjct: 1637 cttctaatgacaaacgcattccctatctaactgcgattatgg 1678
Score = 36.2 bits (18), Expect = 1.1
Identities = 36/42 (85%)
Strand = Plus / Plus
Query: 1032 gaacgtggttgcatatgacggcaagtgtctagtggtgaggga 1073
|||||||||||| || || | ||||||||| ||| |||||||
Sbjct: 450 gaacgtggttgcgtacgatgacaagtgtcttgtgctgaggga 491
>At1g20730.1 68414.m02597 expressed protein contains TIGRFAM TIGR01640 : F-box
protein interaction domain
Length = 1704
Score = 135 bits (68), Expect = 2e-30
Identities = 176/212 (83%)
Strand = Plus / Plus
Query: 625 ttcaagatcgtctgcatacttgagatggaaacaaagtacagatttgaaatcagcgacgga 684
||||||||||| |||||||| ||||||||||| |||| | || || ||||| ||||||
Sbjct: 1027 ttcaagatcgtatgcatactcgagatggaaacggtgtacgggttcgagatcagtgacgga 1086
Query: 685 gattcttggaggttatcgaaaacgaccctcacgaccagctccaaaagtggtctcaagaag 744
||||| |||||||||||| |||| ||| |||| || ||||| ||||| |||| ||
Sbjct: 1087 gattcatggaggttatcggaaacaaccatcaccactagctcaaaaagcctactcacgaca 1146
Query: 745 cggatgaaacctgtttacgtagatggcaatcttcactggttgagaaacgactggagcatc 804
||||||||||||||||| | || |||| |||||||||| ||||||||||| |||| |||
Sbjct: 1147 tggatgaaacctgtttacttggacggcactcttcactggctgagaaacgacgggagtatc 1206
Query: 805 atagcgttcaatcccgagacagagcaagcacg 836
||||| ||| |||| ||||||||||| |||||
Sbjct: 1207 atagctttcgatcctgagacagagcaggcacg 1238
Score = 56.0 bits (28), Expect = 1e-06
Identities = 97/120 (80%)
Strand = Plus / Plus
Query: 400 ggctcatgctccggccttctcctactatacattggtcacttcttcatcgtaaatcccttg 459
||||||||||||||||||||| |||||| ||| | | | ||||| ||| ||||||| |
Sbjct: 805 ggctcatgctccggccttctcttactattcatcgatggcctcttcctcgcaaatcccctc 864
Query: 460 acaaagaaatttcgaatcgtggatcactctgggtcgaagcttctgcctcacatagttggt 519
||||||| |||||| || |||||||||| || ||||||||| ||| |||| |||||
Sbjct: 865 acaaagaggtttcgacctttgaatcactctggctcaaagcttctgtctcccatatttggt 924
Score = 48.1 bits (24), Expect = 3e-04
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1103 ttcatgtgtacgacatggaagctgacagttgg 1134
|||||||||||||| |||||||| ||||||||
Sbjct: 1505 ttcatgtgtacgacttggaagctaacagttgg 1536
Score = 44.1 bits (22), Expect = 0.004
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 904 aatctcctgacattgatatcagggacgaaaaaagcaatctcagtttacacacta 957
|||| |||||| || ||||| |||||||| || |||| |||||||||||||||
Sbjct: 1309 aatcgcctgaccttaatatcggggacgaaggaaacaatttcagtttacacacta 1362
>At1g20940.1 68414.m02622 F-box family protein contains Pfam:PF00646 F-box domain
Length = 1245
Score = 133 bits (67), Expect = 6e-30
Identities = 316/399 (79%)
Strand = Plus / Plus
Query: 616 accaagatattcaagatcgtctgcatacttgagatggaaacaaagtacagatttgaaatc 675
||||||| |||||||||||| ||||||| |||||||||| ||| |||| || |||
Sbjct: 547 accaagagattcaagatcgtgggcatactcgagatggaaaacgtatacggattcgagatc 606
Query: 676 agcgacggagattcttggaggttatcgaaaacgaccctcacgaccagctccaaaagtggt 735
| ||| ||||| |||||||| |||||| |||||| |||| || ||||| ||||||| |
Sbjct: 607 aacgaaggagactcttggagattatcggaaacgagtatcaccactagctcaaaaagtgat 666
Query: 736 ctcaagaagcggatgaaacctgtttacgtagatggcaatcttcactggttgagaaacgac 795
|||| | ||||||||||||||||||| | || || |||||||||| ||||||||||
Sbjct: 667 ctcactacgcggatgaaacctgtttacttggacaacactcttcactggctgagaaacgat 726
Query: 796 tggagcatcatagcgttcaatcccgagacagagcaagcacgactgattccttgtagcttc 855
| |||||||| | || ||||||||||||||||||||| | ||||||||| | ||
Sbjct: 727 ggcagcatcatgtcttttaatcccgagacagagcaagcatgcttgattccttccatattt 786
Query: 856 catccaacaccggatacgaaggtgcttttcgcagcaaacgatgagaccaatctcctgaca 915
|||| ||||||||||||| | |||||||| | || || | ||| ||||| ||||||
Sbjct: 787 catcgggaaccggatacgaagctacttttcgcggaaagcgttaagatcaatcgcctgacc 846
Query: 916 ttgatatcagggacgaaaaaagcaatctcagtttacacactactcgggtatcacaagtgg 975
| || || ||||||| | || ||||||| ||||||||||| ||| | ||||||| |||
Sbjct: 847 ctaatttcggggacgatagaaacaatctccgtttacacacttgtcgagaatcacaaatgg 906
Query: 976 acactcgcaagccagttcaagaacgtatcaatggaggaa 1014
|||||| |||| | | |||||||| |||| || ||||||
Sbjct: 907 acactcacaaggcggatcaagaacatatctatcgaggaa 945
Score = 131 bits (66), Expect = 2e-29
Identities = 135/158 (85%)
Strand = Plus / Plus
Query: 131 atgatttacctttggatcttctcgacatgattctcttcagatcagaaccccaagctatgg 190
||||||||||||| || ||||||||| |||||||||||||| ||||||| || ||||||
Sbjct: 50 atgatttacctttagaccttctcgacgagattctcttcagattagaacccaaatctatgg 109
Query: 191 caatgatacgatgtacaaacaaatctttcaaatcgtatttaactgacccaagatttggac 250
| ||||| ||||| || ||||| ||| ||||||| ||||||| ||| |||||||||||||
Sbjct: 110 ctatgatgcgatgcactaacaattctatcaaatcatatttaagtgatccaagatttggac 169
Query: 251 ctcagtatccttcgtgggtcagacccactttgattaac 288
| | |||||||| ||||||||||| | |||| |||||
Sbjct: 170 cggaatatccttcatgggtcagacctagtttgtttaac 207
Score = 73.8 bits (37), Expect = 5e-12
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 1102 cttcatgtgtacgacatggaagctgacagttggggagtttt 1142
|||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1039 cttcatgtgtacgacatggaagctaacagttggggagtttt 1079
Score = 67.9 bits (34), Expect = 3e-10
Identities = 94/114 (82%)
Strand = Plus / Plus
Query: 388 tgttacattttcggctcatgctccggccttctcctactatacattggtcacttcttcatc 447
||||||||||||||||||||||| || ||||||||| | ||||||||| |||| |
Sbjct: 313 tgttacattttcggctcatgctctggtcttctcctattgtacattggttgtctctttgtt 372
Query: 448 gtaaatcccttgacaaagaaatttcgaatcgtggatcactctgggtcgaagctt 501
| ||||||||| ||||| | ||||||||| ||||||| ||||| || ||||||
Sbjct: 373 gcaaatcccttaacaaaaaggtttcgaatcctggatcattctggatcaaagctt 426
Score = 50.1 bits (25), Expect = 7e-05
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 319 tgccaacctttggtctattcatgtgattatatgtcac 355
||||| |||||||||| |||||| |||||||||||||
Sbjct: 238 tgccatcctttggtctcttcatgcgattatatgtcac 274
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 59,711
Number of Sequences: 29161
Number of extensions: 59711
Number of successful extensions: 1352
Number of sequences better than 10.0: 45
length of query: 1940
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1922
effective length of database: 43,533,334
effective search space: 83671067948
effective search space used: 83671067948
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)