BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BX838966.f
(1047 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01830.1 68414.m00102 armadillo/beta-catenin repeat fami... 2006 0.0
At5g51750.1 68418.m06417 subtilase family protein similar t... 38 0.15
At3g45600.1 68416.m04925 senescence-associated family prote... 38 0.15
At4g03210.1 68417.m00440 xyloglucan:xyloglucosyl transferas... 36 0.58
At2g46030.1 68415.m05726 ubiquitin-conjugating enzyme 6 (UB... 36 0.58
>At1g01830.1 68414.m00102 armadillo/beta-catenin repeat family protein
armadillo/beta-catenin-like repeats, Pfam:PF00514
Length = 2105
Score = 2006 bits (1012), Expect = 0.0
Identities = 1019/1020 (99%), Gaps = 1/1020 (0%)
Strand = Plus / Minus
Query: 1 gtgaaagaagcttcttagctttcctctttcaagcttctcgagaagcttatcggcgcccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1949 gtgaaagaagcttcttagctttcctctttcaagcttctcgagaagcttatcggcgcccat 1890
Query: 61 tacttccatctccgacagcttcttcagataccctattgctccgtacgacaccatcatttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1889 tacttccatctccgacagcttcttcagataccctattgctccgtacgacaccatcatttt 1830
Query: 121 cttactcttctcgcttcccgacatccccaacagccccgccacggcgtacttcttcgccgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1829 cttactcttctcgcttcccgacatccccaacagccccgccacggcgtacttcttcgccgt 1770
Query: 181 gtttccagggtttgaatccaataacatcaccaaattcgtcagaacgctcttcccgtcttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1769 gtttccagggtttgaatccaataacatcaccaaattcgtcagaacgctcttcccgtcttt 1710
Query: 241 cttcagttcccgtcgaatccttccttccgctaccaatccagcgatcgcctgagccgccgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1709 cttcagttcccgtcgaatccttccttccgctaccaatccagcgatcgcctgagccgccgc 1650
Query: 301 ttctcgacatccgtttgacttcgattccagaagtttcacgatctccgggatgcaaccgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1649 ttctcgacatccgtttgacttcgattccagaagtttcacgatctccgggatgcaaccgga 1590
Query: 361 ttctcccactagccttttcgtctccggcgagcaagcgaaacggcaaatagccgatgctgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1589 ttctcccactagccttttcgtctccggcgagcaagcgaaacggcaaatagccgatgctgc 1530
Query: 421 tgcttgttgcgcgcctaaagatcctgacttgagtacatgcctcaatcgtggaagcaaatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1529 tgcttgttgcgcgcctaaagatcctgacttgagtacatgcctcaatcgtggaagcaaatt 1470
Query: 481 gagagccacccatatctctggattcaccgacgggattagatttctcagtgccgttaccgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1469 gagagccacccatatctctggattcaccgacgggattagatttctcagtgccgttaccgc 1410
Query: 541 cggttgttgcggcaacggaccgtcgagataagccaagagactcggaactccgccttctga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1409 cggttgttgcggcaacggaccgtcgagataagccaagagactcggaactccgccttctga 1350
Query: 601 gacaatggcttcacgtagagcgtcgctcgctgcagtgagattctgcaaacactcggccat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1349 gacaatggcttcacgtagagcgtcgctcgctgcagtgagattctgcaaacactcggccat 1290
Query: 661 gtgttctcttgatcctaacaatatcccatggtttagaagatcgatcgagactctaattat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1289 gtgttctcttgatcctaacaatatcccatggtttagaagatcgatcgagactctaattat 1230
Query: 721 tccttcttccgcaagcaattgtctcagctctgaaactgctgacatgttcttcagagcagc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 tccttcttccgcaagcaattgtctcagctctgaaactgctgacatgttcttcagagcagc 1170
Query: 781 tgcagacgcagcttggtgacacagaatcccctgttttacagagatctataagcggtgtga 840
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 tgcagacgcagctt-gtgacacagaatcccctgttttacagagatctataagcggtgtga 1111
Query: 841 ttccgccgtgtcctgcgatttcccgtgcgttttcctctgtcatggacagtctctggatcg 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 ttccgccgtgtcctgcgatttcccgtgcgttttcctctgtcatggacagtctctggatcg 1051
Query: 901 caatcgcagctttttctttggtttcaagactccctgattcgattagtctcactaacggag 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 caatcgcagctttttctttggtttcaagactccctgattcgattagtctcactaacggag 991
Query: 961 gcaatacaccttcggagataagccattcgtcgcagtgtcctgattctgctaatacactga 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 gcaatacaccttcggagataagccattcgtcgcagtgtcctgattctgctaatacactga 931
Score = 36.2 bits (18), Expect = 0.58
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 31 aagcttctcgagaagctt 48
||||||||||||||||||
Sbjct: 1902 aagcttctcgagaagctt 1919
>At5g51750.1 68418.m06417 subtilase family protein similar to subtilisin-like
protease GI:3687307 from [Lycopersicon esculentum]
Length = 2575
Score = 38.2 bits (19), Expect = 0.15
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 933 cctgattcgattagtctcactaa 955
|||||| ||||||||||||||||
Sbjct: 1053 cctgatccgattagtctcactaa 1075
>At3g45600.1 68416.m04925 senescence-associated family protein similar to
senescence-associated protein 5 [Hemerocallis hybrid
cultivar] gi|3551954|gb|AAC34855
Length = 1173
Score = 38.2 bits (19), Expect = 0.15
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 750 ctgaaactgctgacatgttcttc 772
||||||||||||| |||||||||
Sbjct: 564 ctgaaactgctgatatgttcttc 586
>At4g03210.1 68417.m00440 xyloglucan:xyloglucosyl transferase, putative /
xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative contains
similarity to xyloglucan endo-transglycosylase-like
protein (XET-1) GI:5070246 from [Medicago truncatula]
Length = 1073
Score = 36.2 bits (18), Expect = 0.58
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 658 catgtgttctcttgatcc 675
||||||||||||||||||
Sbjct: 987 catgtgttctcttgatcc 970
>At2g46030.1 68415.m05726 ubiquitin-conjugating enzyme 6 (UBC6) E2; identical to
gi|431267, SP:P42750, PIR:S52661; contains a
ubiquitin-conjugating enzymes active site (PDOC00163)
Length = 1482
Score = 36.2 bits (18), Expect = 0.58
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 253 tcgaatccttccttccgc 270
||||||||||||||||||
Sbjct: 386 tcgaatccttccttccgc 403
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,378
Number of Sequences: 29161
Number of extensions: 30378
Number of successful extensions: 669
Number of sequences better than 10.0: 58
length of query: 1047
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1029
effective length of database: 43,533,334
effective search space: 44795800686
effective search space used: 44795800686
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)