BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BX838019.f
(1053 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53510.1 68416.m05908 ABC transporter family protein bre... 1970 0.0
At2g37360.1 68415.m04582 ABC transporter family protein 599 e-170
At3g55090.1 68416.m06118 ABC transporter family protein ATP... 131 1e-29
At2g39350.1 68415.m04830 ABC transporter family protein 123 3e-27
At5g13580.1 68418.m01570 ABC transporter family protein 86 7e-16
>At3g53510.1 68416.m05908 ABC transporter family protein breast cancer resistance
protein (BCRP), Homo sapiens, EMBL:AF098951
Length = 2650
Score = 1970 bits (994), Expect = 0.0
Identities = 1034/1046 (98%), Gaps = 1/1046 (0%)
Strand = Plus / Minus
Query: 1 aatcagcgacgcttgttcttgcttccgatcaagagtgtgaagtagaagagaaccctaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2563 aatcagcgacgcttgttcttgcttccgatcaagagtgtgaagtagaagagaaccctaaag 2504
Query: 61 aagaatccccaagctacagtgatccacaagcaattccatttgcttatctccgtgattcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2503 aagaatccccaagctacagtgatccacaagcaattccatttgcttatctccgtgattcct 2444
Query: 121 tgctgtttcagtatatcgattcccgtcgttacgcaagtgtccgccgtcacgttgatcccc 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2443 tgctgtttcagtatatcgattcccgtcgttacgcaagtctccgccgtcacgttgatcccc 2384
Query: 181 aaaacgccgctcatgctcttcaggaggctgattttcacggcggttggaacttgtcccagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2383 aaaacgccgctcatgctcttcaggaggctgattttcacggcggttggaacttgtcccagc 2324
Query: 241 ggcgaattgtcgaacatctggatccctctgacgaagcatttcgtcggatcttcgaattcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2323 ggcgaattgtcgaacatctggatccctctgacgaagcatttcgtcggatcttcgaattcg 2264
Query: 301 ttctgtagaacaccttcgtaagggtatttcactagggagaggtaatggaaccagatccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2263 ttctgtagaacaccttcgtaagggtatttcactagggagaggtaatggaaccagatccag 2204
Query: 361 tagagtgggattcgatctctagagatgaagaatccggagaagaggaggaaataagcgagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2203 tagagtgggattcgatctctagagatgaagaatccggagaagaggaggaaataagcgagg 2144
Query: 421 attgctacaaccaccgtgaatccgatcatcacgtgtgagactacgccggataagaacgtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2143 attgctacaaccaccgtgaatccgatcatcacgtgtgagactacgccggataagaacgtc 2084
Query: 481 acgaaggaacttccggcccaaaacgcggtgaggattgtgaagaagaagaagaggaatccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2083 acgaaggaacttccggcccaaaacgcggtgaggattgtgaagaagaagaagaggaatccc 2024
Query: 541 tcggagcctccggcgagtcctacggccgagaatgttgaggcggcgaatgcggcggataag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2023 tcggagcctccggcgagtcctacggccgagaatgttgaggcggcgaatgcggcggataag 1964
Query: 601 attatgagagcagggatggagattattgtgtgagcgaggacgtatgatgatcgccggtaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1963 attatgagagcagggatggagattattgtgtgagcgaggacgtatgatgatcgccggtaa 1904
Query: 661 gcgttgtaagctgtttctctcatgaatatgtaacgttcctgtagaaagactggtattgct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1903 gcgttgtaagctgtttctctcatgaatatgtaacgttcctgtagaaagactggtattgct 1844
Query: 721 tctgcacatgtgtagaatgttgtggacattgcgaatgcgaagaaccctaagcgttcttgt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1843 tctgcacatgtgtagaatgttgtggacattgcgaatgcgaagaaccctaagcgttcttgt 1784
Query: 781 atacctcttggtgaattgtctagtttccagaatattgtggctaggatcattccggtgact 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1783 atacctcttggtgaattgtctagtttccagaatattgtggctaggatcattccggtgact 1724
Query: 841 agtacagctcctaggcggattccgaatagctctgggtgtcttcttgagtttagtatagat 900
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1723 agtacagctcctaggcggattccgaatagctctggttgtcttcttgagtttagtatagat 1664
Query: 901 cgtttaccaattacgagcatttcagtccagaatgggtttgcaaagggttgaaatgatgat 960
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1663 cgtttaccaattacgagcatttcagtccagaatgggtttgcaaaggtttgaaatgatgat 1604
Query: 961 cttaggtttgttgctccggggacaaactttcctctcgagatacttgcgctggattcatct 1020
||||||||||||||||||| ||||| ||| ||||||||||||||||||||| | |||||
Sbjct: 1603 cttaggtttgttgctccggagacaagcttacctctcgagatacttgcgctgattgcatct 1544
Query: 1021 ttgagaga-aaattggtgtgtcttct 1045
|||||||| | |||||||| ||||||
Sbjct: 1543 ttgagagatacattggtgtttcttct 1518
>At2g37360.1 68415.m04582 ABC transporter family protein
Length = 2366
Score = 599 bits (302), Expect = e-170
Identities = 794/958 (82%)
Strand = Plus / Minus
Query: 13 ttgttcttgcttccgatcaagagtgtgaagtagaagagaaccctaaagaagaatccccaa 72
||||||||||| || |||||||| ||||| || || | |||||||||||| || ||||||
Sbjct: 2356 ttgttcttgctaccaatcaagagagtgaaataaaacaaaaccctaaagaaaaaaccccaa 2297
Query: 73 gctacagtgatccacaagcaattccatttgcttatctccgtgattccttgctgtttcagt 132
|| ||||| |||||||| ||||||||||| || || ||||| || |||||||||||||
Sbjct: 2296 gcaacagtaatccacaaacaattccatttactaatatccgtaatcccttgctgtttcaaa 2237
Query: 133 atatcgattcccgtcgttacgcaagtgtccgccgtcacgttgatccccaaaacgccgctc 192
||||| || |||||||| || ||||| ||||||||||| || ||||||| || ||||||
Sbjct: 2236 atatcaatccccgtcgtcacacaagtctccgccgtcacattcgtccccaatacaccgctc 2177
Query: 193 atgctcttcaggaggctgattttcacggcggttggaacttgtcccagcggcgaattgtcg 252
|| ||||||| || | | |||||| || | |||| | |||| |||||||||||||
Sbjct: 2176 atactcttcaacagattcactttcacatcgttcggaaactcccccaacggcgaattgtcg 2117
Query: 253 aacatctggatccctctgacgaagcatttcgtcggatcttcgaattcgttctgtagaaca 312
|| | ||| | |||||| |||| ||| ||||||||| || ||||||||||| | ||
Sbjct: 2116 aataactgaactcctctggcgaaacatctcgtcggattttgaaattcgttctgcaacact 2057
Query: 313 ccttcgtaagggtatttcactagggagaggtaatggaaccagatccagtagagtgggatt 372
|||||||||||||||||||| | ||||| |||||||||||||| |||||| | || |||
Sbjct: 2056 ccttcgtaagggtatttcaccaaggagatgtaatggaaccagagccagtaaacaggaatt 1997
Query: 373 cgatctctagagatgaagaatccggagaagaggaggaaataagcgaggattgctacaacc 432
||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 1996 cgatctcgagagatgaagaatccggagaagaggaggaagtaagcgaggatcgctactacg 1937
Query: 433 accgtgaatccgatcatcacgtgtgagactacgccggataagaacgtcacgaaggaactt 492
|| |||||||||| ||| |||| || | |||||||| | |||||| |||||||| |||
Sbjct: 1936 actgtgaatccgagcattacgtttggtataacgccggagaggaacgttacgaaggagctt 1877
Query: 493 ccggcccaaaacgcggtgaggattgtgaagaagaagaagaggaatccctcggagcctccg 552
|| |||||||| | || |||||||||||| ||||||||| ||| || | || |||||||
Sbjct: 1876 cctgcccaaaatgaggctaggattgtgaagtagaagaagaagaaaccattggcgcctccg 1817
Query: 553 gcgagtcctacggccgagaatgttgaggcggcgaatgcggcggataagattatgagagca 612
|||| || |||||| ||||||||| ||||||||| ||||| | || || | ||
Sbjct: 1816 tcgagaccaacggcccagaatgttgtggcggcgaagcttgcggagaggacgattaaggcc 1757
Query: 613 gggatggagattattgtgtgagcgaggacgtatgatgatcgccggtaagcgttgtaagct 672
||||| |||||||| | |||| ||||||||| || |||| |||||||||||||||||||
Sbjct: 1756 gggattgagattatggattgagagaggacgtaggaggatctccggtaagcgttgtaagct 1697
Query: 673 gtttctctcatgaatatgtaacgttcctgtagaaagactggtattgcttctgcacatgtg 732
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 1696 gtttctctcatgaatatgtaacgttcttgtagaaagactgggattgcttctgcacatgtg 1637
Query: 733 tagaatgttgtggacattgcgaatgcgaagaaccctaagcgttcttgtatacctcttggt 792
||||||||||| |||||||||||||||||||| ||||| ||||||||| ||| ||||
Sbjct: 1636 tagaatgttgttgacattgcgaatgcgaagaatcctaaacgttcttgtgctccttttggg 1577
Query: 793 gaattgtctagtttccagaatattgtggctaggatcattccggtgactagtacagctcct 852
||||||||||| || ||| ||||| |||||||| ||||||||||| | ||||||||||
Sbjct: 1576 gaattgtctaggttagtgaacattgtagctaggatgattccggtgaccattacagctcct 1517
Query: 853 aggcggattccgaatagctctgggtgtcttcttgagtttagtatagatcgtttaccaatt 912
|| | ||||||| || ||||| |||||||||||||||| ||||| ||||| || |||
Sbjct: 1516 agtctcattccgaggagttctggttgtcttcttgagtttaatatagcacgtttgcctatt 1457
Query: 913 acgagcatttcagtccagaatgggtttgcaaagggttgaaatgatgatcttaggtttg 970
|| | ||||||| ||||||| || || || || | ||| ||||||| | |||||||||
Sbjct: 1456 actatcatttcaatccagaaaggattggcgaatgtttggaatgatggtgttaggtttg 1399
>At3g55090.1 68416.m06118 ABC transporter family protein ATP-binding
cassette-sub-family G-member 2, Mus musculus,
EMBL:AF140218
Length = 2163
Score = 131 bits (66), Expect = 1e-29
Identities = 174/210 (82%)
Strand = Plus / Minus
Query: 630 gtgagcgaggacgtatgatgatcgccggtaagcgttgtaagctgtttctctcatgaatat 689
||||| ||| ||||| || |||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 1536 gtgagagagaacgtaggaggatctccggtaagcgttgtaagctgtttctctcatgaagat 1477
Query: 690 gtaacgttcctgtagaaagactggtattgcttctgcacatgtgtagaatgttgtggacat 749
|||||||||||| || || || || | || || || || |||||||| |||| |||||
Sbjct: 1476 gtaacgttcctggaggaacacgggaagagcatcggcgcaagtgtagaacattgttgacat 1417
Query: 750 tgcgaatgcgaagaaccctaagcgttcttgtatacctcttggtgaattgtctagtttcca 809
||||||||||||||||||||| || ||||| | ||| |||||||||| || | | |||
Sbjct: 1416 tgcgaatgcgaagaaccctaaccgctcttgaactccttttggtgaattatccaatcgcca 1357
Query: 810 gaatattgtggctaggatcattccggtgac 839
||||| ||||||| ||| | |||||||||
Sbjct: 1356 gaatacggtggctaagatgaatccggtgac 1327
Score = 52.0 bits (26), Expect = 1e-05
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 463 acgccggataagaacgtcacgaaggaacttccgg 496
|||||||||||||| ||||||||||| |||||||
Sbjct: 1703 acgccggataagaaagtcacgaaggagcttccgg 1670
>At2g39350.1 68415.m04830 ABC transporter family protein
Length = 2862
Score = 123 bits (62), Expect = 3e-27
Identities = 128/150 (85%)
Strand = Plus / Minus
Query: 630 gtgagcgaggacgtatgatgatcgccggtaagcgttgtaagctgtttctctcatgaatat 689
||||| ||| |||||||| |||| |||||||||||||||||| |||||||||||||| ||
Sbjct: 1757 gtgagagagaacgtatgaggatctccggtaagcgttgtaagcagtttctctcatgaagat 1698
Query: 690 gtaacgttcctgtagaaagactggtattgcttctgcacatgtgtagaatgttgtggacat 749
||||||||||| ||||| ||||||| || || || || |||||||| |||| |||||
Sbjct: 1697 ataacgttcctggagaaaaactggtaacgcatcggcgcaagtgtagaacattgtcgacat 1638
Query: 750 tgcgaatgcgaagaaccctaagcgttcttg 779
||||| |||||||||||||| || |||||
Sbjct: 1637 cgcgaaggcgaagaaccctaaccgctcttg 1608
Score = 48.1 bits (24), Expect = 2e-04
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 10 cgcttgttcttgcttccgatcaagagtgtgaagtagaagagaaccctaaagaagaatccc 69
||||||||||||||||| | || | ||||||||||| | || |||||| ||||| ||
Sbjct: 2377 cgcttgttcttgcttcctagtaacaaagtgaagtagaacaaaatcctaaaaaagaaccca 2318
Query: 70 caagctacagtgatccacaagcaattccattt 101
|||| || ||||| ||||||||||||||||
Sbjct: 2317 aaagcaactgtgatgaacaagcaattccattt 2286
Score = 48.1 bits (24), Expect = 2e-04
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 858 gattccgaatagctctgggtgtcttcttgagtttagtatagatcgttt 905
|||||||||||||||||| ||||||| ||| || || || ||||||||
Sbjct: 1529 gattccgaatagctctggttgtcttcgtgaattgagcattgatcgttt 1482
>At5g13580.1 68418.m01570 ABC transporter family protein
Length = 2510
Score = 85.7 bits (43), Expect = 7e-16
Identities = 172/215 (80%)
Strand = Plus / Minus
Query: 655 cggtaagcgttgtaagctgtttctctcatgaatatgtaacgttcctgtagaaagactggt 714
||||||||||||||||| |||||||||||||| ||| ||||||| || || || || ||
Sbjct: 1719 cggtaagcgttgtaagcagtttctctcatgaaaatgaaacgttcttggaggaaaacaggg 1660
Query: 715 attgcttctgcacatgtgtagaatgttgtggacattgcgaatgcgaagaaccctaagcgt 774
| || ||||| || |||||||| |||||||||||||| || |||||| | || | |||
Sbjct: 1659 agagcatctgcgcaagtgtagaacgttgtggacattgcaaaagcgaagcatccaagacgt 1600
Query: 775 tcttgtatacctcttggtgaattgtctagtttccagaatattgtggctaggatcattccg 834
||||| | ||| | || || || ||||| | ||| || || ||||||| ||| | |||
Sbjct: 1599 tcttggactcctttaggggagttatctagctgccaaaacatagtggctaagatgaatcca 1540
Query: 835 gtgactagtacagctcctaggcggattccgaatag 869
||||||| |||||||||||||| || ||||||||
Sbjct: 1539 gtgactaaaacagctcctaggcgtatcccgaatag 1505
Score = 60.0 bits (30), Expect = 4e-08
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 57 aaagaagaatccccaagctacagtgatccacaagcaattccatttg 102
||||||||| |||||||| || |||| |||||||||||||||||||
Sbjct: 2317 aaagaagaagccccaagcgaccgtgacccacaagcaattccatttg 2272
Score = 54.0 bits (27), Expect = 2e-06
Identities = 126/159 (79%)
Strand = Plus / Minus
Query: 342 gtaatggaaccagatccagtagagtgggattcgatctctagagatgaagaatccggagaa 401
|||||||||||||||||||||| ||||||||||||| |||||||||||| |||
Sbjct: 2032 gtaatggaaccagatccagtagccagggattcgatctcggttgatgaagaatccactgaa 1973
Query: 402 gaggaggaaataagcgaggattgctacaaccaccgtgaatccgatcatcacgtgtgagac 461
|| | |||||| || | || |||||||| | ||| | |||| ||| ||||||| |||
Sbjct: 1972 aagcaagaaataggctaaaatggctacaacaatggtgtaaccgagcataacgtgtgggac 1913
Query: 462 tacgccggataagaacgtcacgaaggaacttccggccca 500
||||| |||||||| || ||||| || ||||| |||||
Sbjct: 1912 aacgcctgataagaaggtgacgaatgagcttcctgccca 1874
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 47,437
Number of Sequences: 29161
Number of extensions: 47437
Number of successful extensions: 5279
Number of sequences better than 10.0: 389
length of query: 1053
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1035
effective length of database: 43,533,334
effective search space: 45057000690
effective search space used: 45057000690
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)