BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BX837503.f
(1134 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g42290.1 68415.m05235 leucine-rich repeat family protein... 2064 0.0
At3g57830.1 68416.m06447 leucine-rich repeat transmembrane ... 202 5e-51
At3g28040.1 68416.m03500 leucine-rich repeat transmembrane ... 40 0.040
At2g37840.2 68415.m04646 protein kinase family protein cont... 40 0.040
At2g37840.1 68415.m04645 protein kinase family protein cont... 40 0.040
>At2g42290.1 68415.m05235 leucine-rich repeat family protein contains protein
kinase domain, Pfam:PF00069; contains leucine-rich
repeats, Pfam:PF00560
Length = 2213
Score = 2064 bits (1041), Expect = 0.0
Identities = 1054/1057 (99%), Gaps = 1/1057 (0%)
Strand = Plus / Minus
Query: 15 accatgtaaggcagagtacaagctgccattgttaatgaaatcagtgatgagaagcttctc 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1426 accatgtaaggcagagtacaagctgccattgttaatgaaatcagtgatgagaagcttctc 1367
Query: 75 gtcctctgcatagtagtaagctcttagccgtacaatgttaggatgattgatcctaccaat 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1366 gtcctctgcatagtagtaagctcttagccgtacaatgttaggatgattgatcctaccaat 1307
Query: 135 gctctcaacttcattcacaaaatccttaaatcgccacgtgtcattgccgtcgctgagcct 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1306 gctctcaacttcattcacaaaatccttaaatcgccacgtgtcattgccgtcgctgagcct 1247
Query: 195 tctaacggcgacaacggtggaggacgattccgccgccactactctatacacaatcccgct 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 tctaacggcgacaacggtggaggacgattccgccgccactactctatacacaatcccgct 1187
Query: 255 tctgctcttgcctatcacgtaagccgatgctctcagcaaatcctcaagctcaagctcgaa 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1186 tctgctcttgcctatcacgtaagccgatgctctcagcaaatcctcaagctcaagctcgaa 1127
Query: 315 tccttcatcaaacgctacgaatttaccttcttgcccttcttcgtcgaactctgaaaccac 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 tccttcatcaaacgctacgaatttaccttcttgcccttcttcgtcgaactctgaaaccac 1067
Query: 375 cgtcgtcgtctttgtctccgaattgtacccatcggagcttcgttttctccggatcagcca 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 cgtcgtcgtctttgtctccgaattgtacccatcggagcttcgttttctccggatcagcca 1007
Query: 435 tacagagagagaaacagctccgattacaaccgaaactccagaaatcagagaaacggttac 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 tacagagagagaaacagctccgattacaaccgaaactccagaaatcagagaaacggttac 947
Query: 495 tgaaccggtgatctgctgcttcttctcctttgcgtcgtcattgctgattacactagggtt 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 tgaaccggtgatctgctgcttcttctcctttgcgtcgtcattgctgattacactagggtt 887
Query: 555 tggtttctggagttcttgagtaccttccggctttgcagcgacgaaatttggggttttgat 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 tggtttctggagttcttgagtaccttccggctttgcagcgacgaaatttggggttttgat 827
Query: 615 tttttcacacggcgtttgcaatgggaagccacagagatgagagtttccagcgaatgcgtt 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 tttttcacacggcgtttgcaatgggaagccacagagatgagagtttccagcgaatgcgtt 767
Query: 675 tggtccttgattcaacagagatcccacctgaggtacttttccggtgagattgttgtgact 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 tggtccttgattcaacagagatcccacctgaggtacttttccggtgagattgttgtgact 707
Query: 735 aagatctaagctgacgtgaactcgaaatcgaccgtacgacggtggaatctcgccggtgaa 794
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 aaaatctaagctgacgtgaactcgaaatcgaccgtacgacggtggaatctcgccggtgaa 647
Query: 795 ttggttgagagagaaattcaaggttccgacgaggcttccgagttcagtgagtgactcagg 854
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ttggttgaaagagaaattcaaggttccgacgaggcttccgagttcagtgagtgactcagg 587
Query: 855 gagtgaaccgttgagatgattggaggagaaatcaaggtggttgagtgacttcatggactt 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gagtgaaccgttgagatgattggaggagaaatcaaggtggttgagtgacttcatggactt 527
Query: 915 gatttgggccggtattgggccggagagtgagttgtgagagagatcgatgtaccggagctt 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gatttgggccggtattgggccggagagtgagttgtgagagagatcgatgtaccggagctt 467
Query: 975 ggttgcttcgaagagacgaaccggtatggttttagagaaattgttgtgagctagatcaag 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ggttgcttcgaagagacgaaccggtatggttttagagaaattgttgtgagctagatcaag 407
Query: 1035 ccggtttagcgagttgagt-aaccgagttctgatgga 1070
||||||||||||||||||| |||||||||||||||||
Sbjct: 406 ccggtttagcgagttgagtaaaccgagttctgatgga 370
>At3g57830.1 68416.m06447 leucine-rich repeat transmembrane protein kinase,
putative several receptor-like protein kinases
Length = 2476
Score = 202 bits (102), Expect = 5e-51
Identities = 279/338 (82%)
Strand = Plus / Minus
Query: 634 aatgggaagccacagagatgagagtttccagcgaatgcgtttggtccttgattcaacaga 693
|||||||| |||||||| | ||||||||| ||||| || |||||||||| || || |||
Sbjct: 950 aatgggaaaccacagagctcagagtttccggcgaacgctgttggtccttggtttaagaga 891
Query: 694 gatcccacctgaggtacttttccggtgagattgttgtgactaagatctaagctgacgtga 753
|| || | |||||||| ||||||||||||||| ||||| | ||||||||||||||
Sbjct: 890 gagccaatctgaggtatttttccggtgagattattgtggccgagatctaagctgacaaag 831
Query: 754 actcgaaatcgaccgtacgacggtggaatctcgccggtgaattggttgagagagaaattc 813
||| |||| || || |||||||| ||||| ||||||| ||| |||| ||||| |||
Sbjct: 830 actggaaaacggccatacgacggcggaatttcgccggagaaactgttgtaagagagattg 771
Query: 814 aaggttccgacgaggcttccgagttcagtgagtgactcagggagtgaaccgttgagatga 873
| || ||||| | ||||||||||| ||||||||||| |||||||||||||||||| ||
Sbjct: 770 agtgtgccgactaagcttccgagttgagtgagtgactgagggagtgaaccgttgagtaga 711
Query: 874 ttggaggagaaatcaaggtggttgagtgacttcatggacttgatttgggccggtattggg 933
|||||||||||||||| ||| |||| ||| | ||| | |||||||||||| ||||||
Sbjct: 710 ttggaggagaaatcaatgtgagtgagattcttgagggattggatttgggccggaattggg 651
Query: 934 ccggagagtgagttgtgagagagatcgatgtaccggag 971
||||||| |||||||||||||||||| ||||| |||||
Sbjct: 650 ccggagattgagttgtgagagagatcaatgtaacggag 613
Score = 127 bits (64), Expect = 2e-28
Identities = 103/116 (88%)
Strand = Plus / Minus
Query: 229 gccactactctatacacaatcccgcttctgctcttgcctatcacgtaagccgatgctctc 288
||||||||||| ||||||||||| ||||||||||| || | ||||||||||||||||||
Sbjct: 1361 gccactactctgtacacaatcccacttctgctctttccgacgacgtaagccgatgctctc 1302
Query: 289 agcaaatcctcaagctcaagctcgaatccttcatcaaacgctacgaatttaccttc 344
||||||||||| ||||| |||||||||||||| || | | | ||||||||||||||
Sbjct: 1301 agcaaatcctcgagctcgagctcgaatccttcgtccatcaccacgaatttaccttc 1246
Score = 97.6 bits (49), Expect = 2e-19
Identities = 82/93 (88%)
Strand = Plus / Minus
Query: 15 accatgtaaggcagagtacaagctgccattgttaatgaaatcagtgatgagaagcttctc 74
||||||||||||||||||||||||||| ||| ||| |||||||||| | ||| ||||
Sbjct: 1602 accatgtaaggcagagtacaagctgccgttgcgtatgtaatcagtgatcaagagcctctc 1543
Query: 75 gtcctctgcatagtagtaagctcttagccgtac 107
|||||| |||||||| |||||||||||||||||
Sbjct: 1542 gtcctcagcatagtaataagctcttagccgtac 1510
Score = 63.9 bits (32), Expect = 3e-09
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 408 ggagcttcgttttctccggatcagccatacagagagagaaacagctccgattacaaccga 467
||||||| |||||| || ||||||||||| |||| |||||| ||||||||||| | ||
Sbjct: 1176 ggagcttaattttcttcgaatcagccatacggagatagaaactgctccgattacgattga 1117
Query: 468 aactccagaaatcagagaaacggttactgaaccggtgatc 507
||||| || || |||||||| ||||| || |||||||||
Sbjct: 1116 gactccggagatgagagaaaccgttacggatccggtgatc 1077
Score = 32.2 bits (16), Expect = 9.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 547 ctagggtttggtttct 562
||||||||||||||||
Sbjct: 1043 ctagggtttggtttct 1028
>At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein kinase,
putative contains Pfam profiles: PF00560 leucine rich
repeat, PF00069 eukaryotic protein kinase domain
Length = 3256
Score = 40.1 bits (20), Expect = 0.040
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 715 ccggtgagattgttgtgactaagatcta 742
|||| |||||||||||| ||||||||||
Sbjct: 495 ccggagagattgttgtggctaagatcta 468
>At2g37840.2 68415.m04646 protein kinase family protein contains protein kinase
domain, Pfam:PF00069
Length = 2916
Score = 40.1 bits (20), Expect = 0.040
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 109 atgttaggatgattgatcct 128
||||||||||||||||||||
Sbjct: 300 atgttaggatgattgatcct 281
>At2g37840.1 68415.m04645 protein kinase family protein contains protein kinase
domain, Pfam:PF00069
Length = 2631
Score = 40.1 bits (20), Expect = 0.040
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 109 atgttaggatgattgatcct 128
||||||||||||||||||||
Sbjct: 387 atgttaggatgattgatcct 368
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 39,266
Number of Sequences: 29161
Number of extensions: 39266
Number of successful extensions: 1021
Number of sequences better than 10.0: 104
length of query: 1134
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1116
effective length of database: 43,533,334
effective search space: 48583200744
effective search space used: 48583200744
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)