BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CF652884.f
(1653 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAF99841.1| unnamed protein product [Tetraodon nigrovir... 37 1.7
ref|XP_408609.1| hypothetical protein AN4472.2 [Aspergillus... 36 2.3
ref|XP_411697.1| hypothetical protein AN7560.2 [Aspergillus... 35 3.9
gb|AAF70857.1| PalC [Emericella nidulans] 35 3.9
ref|NP_041257.1| replicase [Ononis yellow mosaic virus]|gi|... 35 3.9
ref|NP_061524.1| Orf28 [Pseudomonas phage D3]|gi|8895130|gb... 35 5.0
gb|AAO21628.1| NADH subunit 2 [Aphanius mento] 35 5.0
ref|XP_316705.1| ENSANGP00000020897 [Anopheles gambiae]|gi|... 35 5.0
gb|AAO21631.1| NADH subunit 2 [Aphanius mento] 35 5.0
emb|CAG06103.1| unnamed protein product [Tetraodon nigrovir... 35 6.6
>emb|CAF99841.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1016
Score = 36.6 bits (83), Expect = 1.7
Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 14/174 (8%)
Frame = +1
Query: 682 LSTPDTQVPSHIIAAASIMTRLSYLPPPSWSTVLRSTGPLVLLST-HHAQGR-------N 837
L+TP++ + I+ + L+ LP P + VL+ G + + AQG+ +
Sbjct: 664 LNTPNSDTKTMILRDSCQPPELAALPTPESTPVLQQKGLQPITNQWERAQGKVSGPRKES 723
Query: 838 QYAQHSP--LLYPLSLNPTAHSRHCAL--SRPPFLHTPPRRTLQRHSMDLEYPASPHRPT 1005
+ SP L P LNP +H H AL S P P T + +MD PH
Sbjct: 724 NSSAKSPQFLPAPALLNPKSHQGHIALGHSHIPSAVVLPNATHELSNMDGGSDTLPHSSE 783
Query: 1006 GQLPCAHLTSPLARQNTHRPXLSADLLSSLQ--MRSLPLTVASWTVTLPILPGP 1161
L +P ++ + P S D ++L ++ L +VA+ L PGP
Sbjct: 784 -----KRLKNPDSKGSRKDPKRSVDARNTLNDLLKHLNDSVANPKAILQEEPGP 832
>ref|XP_408609.1| hypothetical protein AN4472.2 [Aspergillus nidulans FGSC
A4]|gi|40741625|gb|EAA60815.1| hypothetical protein
AN4472.2 [Aspergillus nidulans FGSC A4]
Length = 1447
Score = 36.2 bits (82), Expect = 2.3
Identities = 42/178 (23%), Positives = 73/178 (40%), Gaps = 19/178 (10%)
Frame = +1
Query: 619 RNRMLTPLAPLAVFLV----MXYHILSTPDTQ-----VPSHI---IAAASIMTRLSYLPP 762
R+ + +AP A+F + + + TP Q +P + IA + + R LP
Sbjct: 689 RHGLQDTVAPAAIFSLGSDEFTFSLDMTPTAQKLLDELPIYTPVQIAPDTNLPRFKDLPD 748
Query: 763 PSWSTVLRSTGPLVLLSTHHAQGRNQYAQHSPLLYPLSLNPTAHSRHCALSRPPFLHTPP 942
SW T +L + +A+G+ + + P + +S++ + S P + PP
Sbjct: 749 ASWKTE-------ILPVSKYARGKIMFREDEPARKRSRYD---YSQYSSGSEHPVVELPP 798
Query: 943 RRTL-------QRHSMDLEYPASPHRPTGQLPCAHLTSPLARQNTHRPXLSADLLSSL 1095
+T RH D +PA P RP + P L +RQ++ + L SL
Sbjct: 799 EQTNVALFQPENRHIRDRIHPAQPFRPPTEYPMPSLGFLESRQSSQWTYAEDEELRSL 856
>ref|XP_411697.1| hypothetical protein AN7560.2 [Aspergillus nidulans FGSC
A4]|gi|40742950|gb|EAA62140.1| hypothetical protein
AN7560.2 [Aspergillus nidulans FGSC A4]
Length = 507
Score = 35.4 bits (80), Expect = 3.9
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +1
Query: 859 LLYPLSLNPTAH-SRHCALSRPPFLHTPPRRTLQRHSMDLEYPASPHRPTGQLPCAHLTS 1035
++YP L T+H S ALS P T RH++ L A P G +HLTS
Sbjct: 1 MVYPFELPTTSHLSFQSALSSHTHPSLPQSATTARHALRLALKAHNRLPRGFQRDSHLTS 60
Query: 1036 PLARQNTHRPXLSA 1077
L+ N + P + A
Sbjct: 61 VLSAINDYLPYVVA 74
>gb|AAF70857.1| PalC [Emericella nidulans]
Length = 507
Score = 35.4 bits (80), Expect = 3.9
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +1
Query: 859 LLYPLSLNPTAH-SRHCALSRPPFLHTPPRRTLQRHSMDLEYPASPHRPTGQLPCAHLTS 1035
++YP L T+H S ALS P T RH++ L A P G +HLTS
Sbjct: 1 MVYPFELPTTSHLSFQSALSSHTHPSLPQSATTARHALRLALKAHNRLPRGFQRDSHLTS 60
Query: 1036 PLARQNTHRPXLSA 1077
L+ N + P + A
Sbjct: 61 VLSAINDYLPYVVA 74
>ref|NP_041257.1| replicase [Ononis yellow mosaic virus]|gi|130553|sp|P20127|POLR_OYMV
RNA replicase polyprotein|gi|67142|pir||RRWPYM genome
polyprotein - Ononis yellow mosaic
virus|gi|332574|gb|AAA46796.1| replicase protein (RP)
Length = 1776
Score = 35.4 bits (80), Expect = 3.9
Identities = 41/156 (26%), Positives = 55/156 (34%), Gaps = 32/156 (20%)
Frame = +1
Query: 721 AAASIMTRLSYLPPPSW-------------STVLRSTGPLVLLSTHHAQGRNQYAQHSPL 861
+A S+ T LS + PSW S L++ PL L S H G N + SP
Sbjct: 458 SAFSLKTSLSTVKWPSWKITALISALPAALSVFLKTISPLSLQSLH--DGYNAHLHPSPF 515
Query: 862 ----------------LYPLSLNPTAHSRHCALSRPPFLHTPPRRTLQRHSMDLEYPASP 993
PLSL P + S AL P F PP + S P
Sbjct: 516 NLSWSLETFHVQSPSPFLPLSLTPPSPSEEIALPPPIFRVPPPLPAQETPSPPAPALVPP 575
Query: 994 HRPTGQLPCAHLTSPL---ARQNTHRPXLSADLLSS 1092
+P P + S ++H+P S+ L S
Sbjct: 576 TQPPQPQPWEEIISTFLSSLNASSHKPSPSSAPLES 611
>ref|NP_061524.1| Orf28 [Pseudomonas phage D3]|gi|8895130|gb|AAF80788.1| Orf28
[Pseudomonas phage D3]
Length = 687
Score = 35.0 bits (79), Expect = 5.0
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = -3
Query: 1054 CSDEREEKLNGRKGVVLW---GDGERPGIQGPSSVVGECDEEACEGMADERVRSVCYGPL 884
CS R+E RK VVLW +R G++ + CDE C DE G L
Sbjct: 595 CSVSRDEVEKSRKDVVLWLKEAADDRSGVKFIDPINAFCDESKCRSYGDE-------GVL 647
Query: 883 GSETGDTRGANVVRI 839
++T A + RI
Sbjct: 648 YTDTNHISDAGLERI 662
>gb|AAO21628.1| NADH subunit 2 [Aphanius mento]
Length = 348
Score = 35.0 bits (79), Expect = 5.0
Identities = 20/48 (41%), Positives = 24/48 (49%)
Frame = +2
Query: 1031 LLLSLVRTRTGXPSPLTSSLPCRCGPYHSPLPRGP*LSPFSLALPASP 1174
L LS T T P+ LT +LP R P+HS LP + LP SP
Sbjct: 293 LRLSYAMTLTTSPNNLTGTLPWRLSPHHSTLPLAVSATMTLCLLPLSP 340
>ref|XP_316705.1| ENSANGP00000020897 [Anopheles gambiae]|gi|21299352|gb|EAA11497.1|
ENSANGP00000020897 [Anopheles gambiae str. PEST]
Length = 1689
Score = 35.0 bits (79), Expect = 5.0
Identities = 45/151 (29%), Positives = 62/151 (40%), Gaps = 16/151 (10%)
Frame = +1
Query: 760 PPSWSTVLRSTGPLVLLSTHHAQGRNQ-YAQHSPLLY-------PLSLNPTAH----SRH 903
P S S + S+G L ST + + HSP PL L P AH R
Sbjct: 931 PSSVSLAVSSSGSTALTSTTASSSSSTAVTSHSPAPMRPSSDNGPLGLQPMAHHHRSDRD 990
Query: 904 CALSRPPFLHTPPRRTLQRHSMDLEYPASPHRPTGQLPCA---HLTSPLARQNTHRPX-L 1071
RP PP R +S+ L+ PH G LP HL P + H P L
Sbjct: 991 REPPRPGTNELPPTRASPINSL-LQGVPPPH---GMLPHPLPLHLGHPGMQLPPHHPAHL 1046
Query: 1072 SADLLSSLQMRSLPLTVASWTVTLPILPGPS 1164
+ L+ + LP ++A+ + LP+L GP+
Sbjct: 1047 AGPLVGHAGL--LPPSLAAHSAGLPLLGGPT 1075
>gb|AAO21631.1| NADH subunit 2 [Aphanius mento]
Length = 348
Score = 35.0 bits (79), Expect = 5.0
Identities = 20/48 (41%), Positives = 24/48 (49%)
Frame = +2
Query: 1031 LLLSLVRTRTGXPSPLTSSLPCRCGPYHSPLPRGP*LSPFSLALPASP 1174
L LS T T P+ LT +LP R P+HS LP + LP SP
Sbjct: 293 LRLSYAMTLTTSPNNLTGTLPWRLSPHHSTLPLAMSATMTLCLLPLSP 340
>emb|CAG06103.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1538
Score = 34.7 bits (78), Expect = 6.6
Identities = 20/68 (29%), Positives = 30/68 (43%), Gaps = 2/68 (2%)
Frame = +1
Query: 868 PLSLNPTAHSRHCALSRPPFLHTPPRRTL--QRHSMDLEYPASPHRPTGQLPCAHLTSPL 1041
P S +P+ P + P +R QRH YPA P +P G+ P ++T P
Sbjct: 260 PHSYSPSRSPPQNTHREGPHPNRPYKRPYSPQRHPQSRHYPAGPPQPRGKRPHDYVTQPP 319
Query: 1042 ARQNTHRP 1065
++ H P
Sbjct: 320 GAESHHPP 327
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 131
effective length of database: 381,428,880
effective search space used: 159818700720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)