BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= CF652884.f
         (1653 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAF99841.1|  unnamed protein product [Tetraodon nigrovir...    37   1.7  
ref|XP_408609.1|  hypothetical protein AN4472.2 [Aspergillus...    36   2.3  
ref|XP_411697.1|  hypothetical protein AN7560.2 [Aspergillus...    35   3.9  
gb|AAF70857.1|  PalC [Emericella nidulans]                         35   3.9  
ref|NP_041257.1|  replicase [Ononis yellow mosaic virus]|gi|...    35   3.9  
ref|NP_061524.1|  Orf28 [Pseudomonas phage D3]|gi|8895130|gb...    35   5.0  
gb|AAO21628.1|  NADH subunit 2 [Aphanius mento]                    35   5.0  
ref|XP_316705.1|  ENSANGP00000020897 [Anopheles gambiae]|gi|...    35   5.0  
gb|AAO21631.1|  NADH subunit 2 [Aphanius mento]                    35   5.0  
emb|CAG06103.1|  unnamed protein product [Tetraodon nigrovir...    35   6.6  
>emb|CAF99841.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1016

 Score = 36.6 bits (83), Expect = 1.7
 Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 14/174 (8%)
 Frame = +1

Query: 682  LSTPDTQVPSHIIAAASIMTRLSYLPPPSWSTVLRSTGPLVLLST-HHAQGR-------N 837
            L+TP++   + I+  +     L+ LP P  + VL+  G   + +    AQG+       +
Sbjct: 664  LNTPNSDTKTMILRDSCQPPELAALPTPESTPVLQQKGLQPITNQWERAQGKVSGPRKES 723

Query: 838  QYAQHSP--LLYPLSLNPTAHSRHCAL--SRPPFLHTPPRRTLQRHSMDLEYPASPHRPT 1005
              +  SP  L  P  LNP +H  H AL  S  P     P  T +  +MD      PH   
Sbjct: 724  NSSAKSPQFLPAPALLNPKSHQGHIALGHSHIPSAVVLPNATHELSNMDGGSDTLPHSSE 783

Query: 1006 GQLPCAHLTSPLARQNTHRPXLSADLLSSLQ--MRSLPLTVASWTVTLPILPGP 1161
                   L +P ++ +   P  S D  ++L   ++ L  +VA+    L   PGP
Sbjct: 784  -----KRLKNPDSKGSRKDPKRSVDARNTLNDLLKHLNDSVANPKAILQEEPGP 832
>ref|XP_408609.1| hypothetical protein AN4472.2 [Aspergillus nidulans FGSC
            A4]|gi|40741625|gb|EAA60815.1| hypothetical protein
            AN4472.2 [Aspergillus nidulans FGSC A4]
          Length = 1447

 Score = 36.2 bits (82), Expect = 2.3
 Identities = 42/178 (23%), Positives = 73/178 (40%), Gaps = 19/178 (10%)
 Frame = +1

Query: 619  RNRMLTPLAPLAVFLV----MXYHILSTPDTQ-----VPSHI---IAAASIMTRLSYLPP 762
            R+ +   +AP A+F +      + +  TP  Q     +P +    IA  + + R   LP 
Sbjct: 689  RHGLQDTVAPAAIFSLGSDEFTFSLDMTPTAQKLLDELPIYTPVQIAPDTNLPRFKDLPD 748

Query: 763  PSWSTVLRSTGPLVLLSTHHAQGRNQYAQHSPLLYPLSLNPTAHSRHCALSRPPFLHTPP 942
             SW T        +L  + +A+G+  + +  P       +   +S++ + S  P +  PP
Sbjct: 749  ASWKTE-------ILPVSKYARGKIMFREDEPARKRSRYD---YSQYSSGSEHPVVELPP 798

Query: 943  RRTL-------QRHSMDLEYPASPHRPTGQLPCAHLTSPLARQNTHRPXLSADLLSSL 1095
             +T         RH  D  +PA P RP  + P   L    +RQ++       + L SL
Sbjct: 799  EQTNVALFQPENRHIRDRIHPAQPFRPPTEYPMPSLGFLESRQSSQWTYAEDEELRSL 856
>ref|XP_411697.1| hypothetical protein AN7560.2 [Aspergillus nidulans FGSC
            A4]|gi|40742950|gb|EAA62140.1| hypothetical protein
            AN7560.2 [Aspergillus nidulans FGSC A4]
          Length = 507

 Score = 35.4 bits (80), Expect = 3.9
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +1

Query: 859  LLYPLSLNPTAH-SRHCALSRPPFLHTPPRRTLQRHSMDLEYPASPHRPTGQLPCAHLTS 1035
            ++YP  L  T+H S   ALS       P   T  RH++ L   A    P G    +HLTS
Sbjct: 1    MVYPFELPTTSHLSFQSALSSHTHPSLPQSATTARHALRLALKAHNRLPRGFQRDSHLTS 60

Query: 1036 PLARQNTHRPXLSA 1077
             L+  N + P + A
Sbjct: 61   VLSAINDYLPYVVA 74
>gb|AAF70857.1| PalC [Emericella nidulans]
          Length = 507

 Score = 35.4 bits (80), Expect = 3.9
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +1

Query: 859  LLYPLSLNPTAH-SRHCALSRPPFLHTPPRRTLQRHSMDLEYPASPHRPTGQLPCAHLTS 1035
            ++YP  L  T+H S   ALS       P   T  RH++ L   A    P G    +HLTS
Sbjct: 1    MVYPFELPTTSHLSFQSALSSHTHPSLPQSATTARHALRLALKAHNRLPRGFQRDSHLTS 60

Query: 1036 PLARQNTHRPXLSA 1077
             L+  N + P + A
Sbjct: 61   VLSAINDYLPYVVA 74
>ref|NP_041257.1| replicase [Ononis yellow mosaic virus]|gi|130553|sp|P20127|POLR_OYMV
            RNA replicase polyprotein|gi|67142|pir||RRWPYM genome
            polyprotein - Ononis yellow mosaic
            virus|gi|332574|gb|AAA46796.1| replicase protein (RP)
          Length = 1776

 Score = 35.4 bits (80), Expect = 3.9
 Identities = 41/156 (26%), Positives = 55/156 (34%), Gaps = 32/156 (20%)
 Frame = +1

Query: 721  AAASIMTRLSYLPPPSW-------------STVLRSTGPLVLLSTHHAQGRNQYAQHSPL 861
            +A S+ T LS +  PSW             S  L++  PL L S H   G N +   SP 
Sbjct: 458  SAFSLKTSLSTVKWPSWKITALISALPAALSVFLKTISPLSLQSLH--DGYNAHLHPSPF 515

Query: 862  ----------------LYPLSLNPTAHSRHCALSRPPFLHTPPRRTLQRHSMDLEYPASP 993
                              PLSL P + S   AL  P F   PP    +  S        P
Sbjct: 516  NLSWSLETFHVQSPSPFLPLSLTPPSPSEEIALPPPIFRVPPPLPAQETPSPPAPALVPP 575

Query: 994  HRPTGQLPCAHLTSPL---ARQNTHRPXLSADLLSS 1092
             +P    P   + S        ++H+P  S+  L S
Sbjct: 576  TQPPQPQPWEEIISTFLSSLNASSHKPSPSSAPLES 611
>ref|NP_061524.1| Orf28 [Pseudomonas phage D3]|gi|8895130|gb|AAF80788.1| Orf28
            [Pseudomonas phage D3]
          Length = 687

 Score = 35.0 bits (79), Expect = 5.0
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = -3

Query: 1054 CSDEREEKLNGRKGVVLW---GDGERPGIQGPSSVVGECDEEACEGMADERVRSVCYGPL 884
            CS  R+E    RK VVLW      +R G++    +   CDE  C    DE       G L
Sbjct: 595  CSVSRDEVEKSRKDVVLWLKEAADDRSGVKFIDPINAFCDESKCRSYGDE-------GVL 647

Query: 883  GSETGDTRGANVVRI 839
             ++T     A + RI
Sbjct: 648  YTDTNHISDAGLERI 662
>gb|AAO21628.1| NADH subunit 2 [Aphanius mento]
          Length = 348

 Score = 35.0 bits (79), Expect = 5.0
 Identities = 20/48 (41%), Positives = 24/48 (49%)
 Frame = +2

Query: 1031 LLLSLVRTRTGXPSPLTSSLPCRCGPYHSPLPRGP*LSPFSLALPASP 1174
            L LS   T T  P+ LT +LP R  P+HS LP     +     LP SP
Sbjct: 293  LRLSYAMTLTTSPNNLTGTLPWRLSPHHSTLPLAVSATMTLCLLPLSP 340
>ref|XP_316705.1| ENSANGP00000020897 [Anopheles gambiae]|gi|21299352|gb|EAA11497.1|
            ENSANGP00000020897 [Anopheles gambiae str. PEST]
          Length = 1689

 Score = 35.0 bits (79), Expect = 5.0
 Identities = 45/151 (29%), Positives = 62/151 (40%), Gaps = 16/151 (10%)
 Frame = +1

Query: 760  PPSWSTVLRSTGPLVLLSTHHAQGRNQ-YAQHSPLLY-------PLSLNPTAH----SRH 903
            P S S  + S+G   L ST  +   +     HSP          PL L P AH     R 
Sbjct: 931  PSSVSLAVSSSGSTALTSTTASSSSSTAVTSHSPAPMRPSSDNGPLGLQPMAHHHRSDRD 990

Query: 904  CALSRPPFLHTPPRRTLQRHSMDLEYPASPHRPTGQLPCA---HLTSPLARQNTHRPX-L 1071
                RP     PP R    +S+ L+    PH   G LP     HL  P  +   H P  L
Sbjct: 991  REPPRPGTNELPPTRASPINSL-LQGVPPPH---GMLPHPLPLHLGHPGMQLPPHHPAHL 1046

Query: 1072 SADLLSSLQMRSLPLTVASWTVTLPILPGPS 1164
            +  L+    +  LP ++A+ +  LP+L GP+
Sbjct: 1047 AGPLVGHAGL--LPPSLAAHSAGLPLLGGPT 1075
>gb|AAO21631.1| NADH subunit 2 [Aphanius mento]
          Length = 348

 Score = 35.0 bits (79), Expect = 5.0
 Identities = 20/48 (41%), Positives = 24/48 (49%)
 Frame = +2

Query: 1031 LLLSLVRTRTGXPSPLTSSLPCRCGPYHSPLPRGP*LSPFSLALPASP 1174
            L LS   T T  P+ LT +LP R  P+HS LP     +     LP SP
Sbjct: 293  LRLSYAMTLTTSPNNLTGTLPWRLSPHHSTLPLAMSATMTLCLLPLSP 340
>emb|CAG06103.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1538

 Score = 34.7 bits (78), Expect = 6.6
 Identities = 20/68 (29%), Positives = 30/68 (43%), Gaps = 2/68 (2%)
 Frame = +1

Query: 868  PLSLNPTAHSRHCALSRPPFLHTPPRRTL--QRHSMDLEYPASPHRPTGQLPCAHLTSPL 1041
            P S +P+           P  + P +R    QRH     YPA P +P G+ P  ++T P 
Sbjct: 260  PHSYSPSRSPPQNTHREGPHPNRPYKRPYSPQRHPQSRHYPAGPPQPRGKRPHDYVTQPP 319

Query: 1042 ARQNTHRP 1065
              ++ H P
Sbjct: 320  GAESHHPP 327
  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 131
effective length of database: 381,428,880
effective search space used: 159818700720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results