BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CF652668.f
(1507 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_908772.1| B1140D12.12 [Oryza sativa (japonica cultiv... 40 0.14
gb|AAL28807.1| LD19086p [Drosophila melanogaster] 39 0.31
pir||S57448 DNA binding protein - rice (fragment)|gi|871498... 39 0.31
ref|XP_327724.1| hypothetical protein [Neurospora crassa]|g... 39 0.40
ref|NP_509491.1| putative protein (112.0 kD) (XJ420) [Caeno... 39 0.40
ref|XP_408954.1| hypothetical protein AN4817.2 [Aspergillus... 39 0.40
ref|XP_236380.2| similar to ring finger 111; arkadia [Rattu... 39 0.40
ref|NP_945566.1| possible OmpA family member [Rhodopseudomo... 38 0.69
gb|AAF76750.1| p8 protein [Homo sapiens] 38 0.69
gb|EAA39492.1| GLP_26_54603_52153 [Giardia lamblia ATCC 50803] 38 0.69
>ref|NP_908772.1| B1140D12.12 [Oryza sativa (japonica
cultivar-group)]|gi|19386784|dbj|BAB86164.1| B1140D12.12
[Oryza sativa (japonica cultivar-group)]
Length = 227
Score = 40.0 bits (92), Expect = 0.14
Identities = 27/67 (40%), Positives = 33/67 (48%), Gaps = 6/67 (8%)
Frame = -3
Query: 1430 RERPRAPP----LRTHRRGLHPALAAMRACRTPPLRLSRAGIPPPRTPRVAAGLPP--RT 1269
R RP PP R RR L P ++ R P RLS PPP PR+A+ + P R+
Sbjct: 150 RRRPSPPPHPTTARLLRRTLPPLASSAAPRRLIPRRLSPPPPPPPPPPRLASSVAPRRRS 209
Query: 1268 PPAHRPL 1248
PP PL
Sbjct: 210 PPPPPPL 216
>gb|AAL28807.1| LD19086p [Drosophila melanogaster]
Length = 124
Score = 38.9 bits (89), Expect = 0.31
Identities = 25/56 (44%), Positives = 30/56 (52%)
Frame = -3
Query: 1418 RAPPLRTHRRGLHPALAAMRACRTPPLRLSRAGIPPPRTPRVAAGLPPRTPPAHRP 1251
R PPLR HRR P L + R P LRL + PPPR+ + P+ PPA RP
Sbjct: 57 RNPPLR-HRRKAPPTLRMVAVLRIP-LRLRKK--PPPRSLKNPPARLPKNPPARRP 108
>pir||S57448 DNA binding protein - rice (fragment)|gi|871498|emb|CAA61277.1| DNA
binding protein [Oryza sativa (indica cultivar-group)]
Length = 112
Score = 38.9 bits (89), Expect = 0.31
Identities = 26/69 (37%), Positives = 30/69 (42%), Gaps = 5/69 (7%)
Frame = -3
Query: 1439 QPQRERPRA----PPLRTHRRGLHPALAAMRACRTPPLRLSRAGIPPPRTPRVAAGLP-P 1275
+P + RPRA PP RT R A +R CR P R P PR P +P P
Sbjct: 16 RPPKVRPRATRPYPPRRTRPRPRRCAGRRLRRCRRPRRAAPRGRPPKPRDPHAPPKIPRP 75
Query: 1274 RTPPAHRPL 1248
R P PL
Sbjct: 76 RGRPRKNPL 84
>ref|XP_327724.1| hypothetical protein [Neurospora crassa]|gi|28926414|gb|EAA35389.1|
hypothetical protein [Neurospora crassa]
Length = 636
Score = 38.5 bits (88), Expect = 0.40
Identities = 24/57 (42%), Positives = 27/57 (47%)
Frame = -3
Query: 1421 PRAPPLRTHRRGLHPALAAMRACRTPPLRLSRAGIPPPRTPRVAAGLPPRTPPAHRP 1251
P+APPL T P L A +A PPL + A PPP P A P P AH P
Sbjct: 438 PQAPPLPTSNAPPPPPLPATQAPPPPPLPATSA--PPPPPPAPPAPPAPPLPAAHAP 492
Score = 36.2 bits (82), Expect = 2.0
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = -3
Query: 1436 PQRERPRAPPLR----THRRGLHPALAAMRACRTPPLRLSRAGIPPPRTPRVAAGLPPRT 1269
P RP PL + R + P R+ PP SR+ +PPP PR +A PP
Sbjct: 352 PPPPRPPKTPLEDQDPSQRFSVPPPFTGQRSVPPPPP--SRSSVPPPPPPRNSAAQPPLP 409
Query: 1268 PPAHRP 1251
P A P
Sbjct: 410 PKAPGP 415
>ref|NP_509491.1| putative protein (112.0 kD) (XJ420) [Caenorhabditis
elegans]|gi|7506276|pir||T28872 hypothetical protein
R04E5.8 - Caenorhabditis
elegans|gi|9803002|gb|AAG00010.1| Hypothetical protein
R04E5.8a [Caenorhabditis elegans]
Length = 997
Score = 38.5 bits (88), Expect = 0.40
Identities = 20/35 (57%), Positives = 21/35 (59%), Gaps = 3/35 (8%)
Frame = -3
Query: 1346 PPLRLSRAG---IPPPRTPRVAAGLPPRTPPAHRP 1251
PP R SRAG PPP PRV PPR+PP RP
Sbjct: 126 PPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRP 160
Score = 35.0 bits (79), Expect = 4.5
Identities = 25/59 (42%), Positives = 26/59 (43%), Gaps = 2/59 (3%)
Frame = -3
Query: 1421 PRAPPLRTHRRG--LHPALAAMRACRTPPLRLSRAGIPPPRTPRVAAGLPPRTPPAHRP 1251
P PP R R G P R RTPP R S PP TP PPRTPP+ P
Sbjct: 123 PPPPPPRKSRAGGSSPPPPPPPRVPRTPPPR-SPPPRRPPMTPPSPQRRPPRTPPSPEP 180
>ref|XP_408954.1| hypothetical protein AN4817.2 [Aspergillus nidulans FGSC
A4]|gi|40741197|gb|EAA60387.1| hypothetical protein
AN4817.2 [Aspergillus nidulans FGSC A4]
Length = 731
Score = 38.5 bits (88), Expect = 0.40
Identities = 20/49 (40%), Positives = 24/49 (48%)
Frame = -2
Query: 1344 TAAPLPRRHPPASYSSRRGRPPTSHTAGAPPALRPHTRAAAASPLTSPV 1198
+A+ LP HPP+ SSR PPT TA L P + PL PV
Sbjct: 87 SASSLPVSHPPSRSSSRASAPPTKKTADGKIVLNPQPDDSRNDPLNWPV 135
>ref|XP_236380.2| similar to ring finger 111; arkadia [Rattus norvegicus]
Length = 956
Score = 38.5 bits (88), Expect = 0.40
Identities = 24/67 (35%), Positives = 31/67 (45%)
Frame = -3
Query: 1439 QPQRERPRAPPLRTHRRGLHPALAAMRACRTPPLRLSRAGIPPPRTPRVAAGLPPRTPPA 1260
QPQ P+ PP P+L++ R PP A PP AA +P PPA
Sbjct: 649 QPQ---PQPPP--------QPSLSSCRHYMPPPSSHPVAPPPPTHLGSTAAPIPQHLPPA 697
Query: 1259 HRPLSAH 1239
H+P+S H
Sbjct: 698 HQPISHH 704
>ref|NP_945566.1| possible OmpA family member [Rhodopseudomonas palustris
CGA009]|gi|39652915|emb|CAE25657.1| possible OmpA family
member [Rhodopseudomonas palustris CGA009]
Length = 689
Score = 37.7 bits (86), Expect = 0.69
Identities = 24/61 (39%), Positives = 30/61 (48%)
Frame = -2
Query: 1371 GSYARVPHATAAPLPRRHPPASYSSRRGRPPTSHTAGAPPALRPHTRAAAASPLTSPVRS 1192
G+ P+ATA P PP + RRG PP A PPA P T A +A+P +P
Sbjct: 221 GAPGTPPNATA---PGMTPPPGEAPRRGPPPPPAAANPPPAAAP-TPAPSAAPQAAPTSP 276
Query: 1191 A 1189
A
Sbjct: 277 A 277
Score = 35.0 bits (79), Expect = 4.5
Identities = 24/65 (36%), Positives = 26/65 (39%), Gaps = 12/65 (18%)
Frame = -2
Query: 1353 PHATAAPLPRRH---PPASYSSRRGRPPTSHTA---------GAPPALRPHTRAAAASPL 1210
P A AP P+R PP S PP H A APP P R AA P
Sbjct: 104 PAAAPAPAPKRAEPPPPPPPSHSAPPPPPPHAAPPPPPAPKPSAPPTAAPAERPAAPPPA 163
Query: 1209 TSPVR 1195
+PVR
Sbjct: 164 AAPVR 168
>gb|AAF76750.1| p8 protein [Homo sapiens]
Length = 77
Score = 37.7 bits (86), Expect = 0.69
Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = -3
Query: 1427 ERPRAPPLRTHRRGLH-PALAAMRACRTPPL---RLSRAGIPPPRTPRVAAGLPPRTPPA 1260
+RPRAP R R P + +TPP RL A PP R P+ G P TPPA
Sbjct: 5 QRPRAPRTRYPTRAPSGPRPPSRSQAQTPPRSVPRLRPAPPPPSRPPQPRPGPAPPTPPA 64
Query: 1259 HRP 1251
RP
Sbjct: 65 ARP 67
>gb|EAA39492.1| GLP_26_54603_52153 [Giardia lamblia ATCC 50803]
Length = 816
Score = 37.7 bits (86), Expect = 0.69
Identities = 29/65 (44%), Positives = 32/65 (48%), Gaps = 2/65 (3%)
Frame = -3
Query: 1439 QPQRERPRA-PPLRTHRRGLHPALAAMR-ACRTPPLRLSRAGIPPPRTPRVAAGLPPRTP 1266
+P+R RPR PLR+ RRG A R CR PP R G PR A LP P
Sbjct: 322 RPRRPRPRRRAPLRSARRGAPDARRRRRRVCRGPP--RGRGG-----APRGPARLPRAPP 374
Query: 1265 PAHRP 1251
PA RP
Sbjct: 375 PAARP 379
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 130
effective length of database: 383,324,178
effective search space used: 142213270038
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)