BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CF652316.f
(1403 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00188477.1| COG0296: 1,4-alpha-glucan branching enzy... 41 0.075
dbj|BAC99930.1| hypothetical protein [Oryza sativa (japonic... 40 0.13
emb|CAG13226.1| unnamed protein product [Tetraodon nigrovir... 38 0.63
ref|ZP_00092690.1| COG1020: Non-ribosomal peptide synthetas... 37 0.83
ref|NP_914254.1| P0483G10.11 [Oryza sativa (japonica cultiv... 37 1.1
ref|NP_874353.1| gametogenetin [Mus musculus]|gi|30350190|g... 37 1.1
ref|XP_341830.1| similar to Trithorax homolog 2 (Mixed line... 37 1.4
gb|AAT01377.1| unknown protein [Oryza sativa (japonica cult... 37 1.4
ref|ZP_00049011.2| hypothetical protein Magn022306 [Magneto... 37 1.4
ref|NP_733441.2| CG1815-PA [Drosophila melanogaster]|gi|454... 36 1.8
>ref|ZP_00188477.1| COG0296: 1,4-alpha-glucan branching enzyme [Rubrobacter xylanophilus
DSM 9941]
Length = 1224
Score = 40.8 bits (94), Expect = 0.075
Identities = 46/172 (26%), Positives = 58/172 (32%), Gaps = 13/172 (7%)
Frame = +1
Query: 598 GKRIGIGKAGGPSEQPRQLGVVPTGQTSG*HPADGPTCQRRG---RPQGQSV*GAGYWRT 768
G +G G+AG P+ P G P G P GP G RP G + R
Sbjct: 290 GLPLGRGRAGRPAAHPEPPGAPPVRAARGGAPRGGPPAPDGGPGLRPAGGDLRPGDTGRE 349
Query: 769 RGTVGGLPRQKWAQREARPSESR----------GAAPRRWPSCQRXXXXXXXXXXXXXXR 918
GLP + A+R R + R GA P+ PS +R
Sbjct: 350 DPPPRGLPPRAGARRRERLPDHRLRGRARPHPGGAPPQALPSARR--------------- 394
Query: 919 GVGSRHVDLLLLALGEPPAVGLSWEPTRGQPPIRGPGRHATSSDTCPRASKR 1074
RH LL L + P RG P RG A + PR +R
Sbjct: 395 ---GRHAPLLRLRRPDRPDEPGGRPGRRGGPGARGAPLGAERAGGLPRGLRR 443
>dbj|BAC99930.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 280
Score = 40.0 bits (92), Expect = 0.13
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +2
Query: 671 ARRVGSIQRTAPPVSGVDVRKDSRYRGRGTGARGEL----SAGCRGRNGRSGRLAPASLG 838
A R+G+ +R+AP GV R+ + R G GA GE +AG R R GRSG A A G
Sbjct: 2 AERIGAARRSAPEGKGVATRRRTSRRNNGLGA-GEAIARGTAGGRKRRGRSGVRAGAGGG 60
Query: 839 G 841
G
Sbjct: 61 G 61
>emb|CAG13226.1| unnamed protein product [Tetraodon nigroviridis]
Length = 592
Score = 37.7 bits (86), Expect = 0.63
Identities = 42/125 (33%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
Frame = -3
Query: 813 PLRPFLPRQPADSSPRAPV--PRPLYRLSLRTSTPLTGGAVRWMLPTRLAGGNDT*LPRL 640
PLRP +P PA PR+P+ P P R SLR ++P+ A LP AGG + P
Sbjct: 301 PLRPQVP-SPAPPPPRSPLTPPSPRQRPSLRPASPV---AAARGLPA--AGGREE--PAG 352
Query: 639 LAGPASLP---DPNPLAQTHSGLSETAAAYVSPPPSKSNRCPSRFDRIPTGPPAHLSGA* 469
LP DP A G AA V P P +P G P HL G
Sbjct: 353 AGARQPLPHGRDPRLAAGLRPG-----AAQVRPHPEVG--------AVPAGRPGHLPGHA 399
Query: 468 NQSIH 454
++H
Sbjct: 400 EAALH 404
>ref|ZP_00092690.1| COG1020: Non-ribosomal peptide synthetase modules and related
proteins [Azotobacter vinelandii]
Length = 2608
Score = 37.4 bits (85), Expect = 0.83
Identities = 38/115 (33%), Positives = 45/115 (39%), Gaps = 9/115 (7%)
Frame = +1
Query: 529 PVALTRGRTDVCGRRFREA-RMSLGKRIGIGKAGG------PSEQPRQLGVVPTGQTSG* 687
P A TRG T G R R A R + G+ G + G P+ R++ VP G T+G
Sbjct: 2428 PPAATRGGTRGGGDRHRRAGRQATGRLPGARRPGDAGRRRTPNRTARRIEGVPRGSTAGL 2487
Query: 688 HPADGPTCQRRGRPQGQSV*GAGYWRTRGTVGGLP--RQKWAQREARPSESRGAA 846
H A P R Q R G G P RQ A P E GAA
Sbjct: 2488 HGAGAPGVPRAAAADPQ--------RQAGPQGAAPAGRQPAAAGLRGPGERTGAA 2534
>ref|NP_914254.1| P0483G10.11 [Oryza sativa (japonica
cultivar-group)]|gi|15289922|dbj|BAB63617.1| P0483G10.11
[Oryza sativa (japonica cultivar-group)]
Length = 315
Score = 37.0 bits (84), Expect = 1.1
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Frame = -2
Query: 1036 RGARVRGSEVGRASAPSSGRLRE------APRVRAEEGRRAVTRRPAHGSGRWHPRKPAE 875
RG R R + GRA+AP +G E PR E GRR + GRW E
Sbjct: 201 RGRR-RSGDGGRAAAPDAGGAEERASGWEGPRAYWERGRRRARAKKEEEGGRWRTHAERE 259
Query: 874 NADRTATV 851
A R A +
Sbjct: 260 EAKRLAAL 267
>ref|NP_874353.1| gametogenetin [Mus musculus]|gi|30350190|gb|AAP31497.1|
gametogenetin protein 1 [Mus musculus]
Length = 675
Score = 37.0 bits (84), Expect = 1.1
Identities = 42/173 (24%), Positives = 55/173 (31%), Gaps = 25/173 (14%)
Frame = -2
Query: 772 PACASTPPPIPTVLADVHAADRWGRPLDATHSSGRWE----------RHLTA*AARWARQ 623
P + PPP T W P D T R+ R T + W
Sbjct: 343 PLARALPPPPYTTFPGSKPKFDWVSPPDGTERHFRFNGAVGGIGAPRRRTTTLSGPWGSP 402
Query: 622 PSRSQSSCPDS---------------FWPLGNGGRIRQSAP**EQQVPLPF*PYSHRPAS 488
P RS + P S +P N G + P QQ+P P P P +
Sbjct: 403 PPRSGQTHPSSGPRRPTPALLAPPMFIFPAPNNGEPVRPVPPSPQQIP-PLPPPPPTPPA 461
Query: 487 TPQWRIKPKHPPPSSLTNIDPRRKTITADHRTMCPVLVVLSSTPVQSPRIPPT 329
TP P PPP+ PR + A T P + + P + PT
Sbjct: 462 TP-----PPAPPPTPQPPALPRTPILVARPPTPGPGHLESALAPTPPSTLSPT 509
>ref|XP_341830.1| similar to Trithorax homolog 2 (Mixed lineage leukemia gene homolog 2
protein) [Rattus norvegicus]
Length = 2566
Score = 36.6 bits (83), Expect = 1.4
Identities = 42/144 (29%), Positives = 57/144 (39%), Gaps = 13/144 (9%)
Frame = -3
Query: 804 PFLPRQPADSSPRAPVPRPLYR---LSLRTSTPLTGGAVRWMLPTR----LAGGNDT*L- 649
P LP PAD SP P PR + R LSL P+ V+ +P L+ G L
Sbjct: 660 PELP--PADDSPAEPEPRAVGRTNHLSLPRFVPVVTTPVKVEMPPHGAPALSEGQQLQLQ 717
Query: 648 --PRLLAG---PASLPDPNPLAQTHSGLSETAAAYVSPPPSKSNRCPSRFDRIPTGPPAH 484
P+ L P +LP P Q PPPS + P R+ + P
Sbjct: 718 QPPQALQTQLLPQALPPQQPQMQ--------------PPPSPQHTPPLEKTRVASLGPLP 763
Query: 483 LSGA*NQSIHLLLRSRTSILDVRQ 412
LSG + LL R++ + + Q
Sbjct: 764 LSGVEEKMFSLLKRAKVQLFKIDQ 787
>gb|AAT01377.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 391
Score = 36.6 bits (83), Expect = 1.4
Identities = 39/125 (31%), Positives = 47/125 (37%), Gaps = 8/125 (6%)
Frame = -2
Query: 763 ASTPPPIPTVLADVHAADRWGRPLDATHSSGRWERHLTA*AARWARQPSRSQSSCPDSFW 584
A PPP VL D + AT G RH A R RQPS S SSCP +
Sbjct: 251 AEPPPPPAVVLVDERTSPLRSYRQAAT---GGPPRHRANAARRRQRQPSSSSSSCPSTAA 307
Query: 583 PLGNGGRIRQSAP**EQQVPLPF*PYSHR------PASTPQWRI--KPKHPPPSSLTNID 428
P P L P S R A P+ R+ P HPPP++ +
Sbjct: 308 P-----------PHPPPAATLRVAPPSRRSSAAAATAGPPRRRVAASPPHPPPAAAFLVA 356
Query: 427 PRRKT 413
RR +
Sbjct: 357 ERRSS 361
>ref|ZP_00049011.2| hypothetical protein Magn022306 [Magnetospirillum magnetotacticum]
Length = 406
Score = 36.6 bits (83), Expect = 1.4
Identities = 28/76 (36%), Positives = 33/76 (42%), Gaps = 7/76 (9%)
Frame = -2
Query: 1033 GARVRGSEVGRASAPSSGRLREAPRVRAEEGRRAVTRRPAHGSGRWHPRKPAENADR--- 863
GAR G+ + R+ AP R R A R V R P S +W P KPA A +
Sbjct: 335 GARYAGAAIRRSRAPCEFRRRNA--------RSTVRRHPKASSQQWEP-KPAHTAKKGGP 385
Query: 862 ----TATVGGPPP*TR 827
T T GG P TR
Sbjct: 386 MSSPTGTHGGSPQGTR 401
>ref|NP_733441.2| CG1815-PA [Drosophila melanogaster]|gi|45446729|gb|AAF57177.2|
CG1815-PA [Drosophila melanogaster]
Length = 1674
Score = 36.2 bits (82), Expect = 1.8
Identities = 44/153 (28%), Positives = 59/153 (37%), Gaps = 18/153 (11%)
Frame = -3
Query: 816 LPLRPFLPRQPADSSP------RAPVPRPLYRLSLRTS--TPLTGGAVRWMLPTRLAG-- 667
LP+ P P P + SP R + R+S + + TGG + + +AG
Sbjct: 1020 LPMPPPPPLPPREESPATADSVRFVGDTTIQRVSQKQGGKSTDTGGKRKGVQQVPIAGIP 1079
Query: 666 --GNDT*LPRLLAGPASLPDPNPLAQTHSGLSETAAAYVSPPPSKSNRCPSRF------D 511
+ T P L P+ P P S A + PPP + S D
Sbjct: 1080 QAPSPTHSPLLSTAPSPSASPKPT-------STLAVSKPPPPPPPKGKSASHLQFRGKND 1132
Query: 510 RIPTGPPAHLSGA*NQSIHLLLRSRTSILDVRQ 412
RIPT PPA A N S LLRS ++ V Q
Sbjct: 1133 RIPTSPPATAPPATNTS--SLLRSNMVVIPVEQ 1163
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 129
effective length of database: 385,219,476
effective search space used: 130204182888
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)