BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CF652086.f
(1351 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB41671.1| adenomatous polyposis coli [Xenopus laevis] 39 0.21
ref|NP_918865.1| P0458A05.23 [Oryza sativa (japonica cultiv... 38 0.46
ref|XP_143054.4| similar to ring finger 111; arkadia [Mus m... 37 1.0
ref|NP_200276.1| formin homology 2 domain-containing protei... 36 1.7
gb|AAS93430.1| formin homology 2 domain-containing protein ... 36 1.7
gb|AAK68741.1| Unknown protein [Arabidopsis thaliana]|gi|22... 36 1.7
ref|NP_998607.1| zgc:63802 [Danio rerio]|gi|34784016|gb|AAH... 36 2.3
ref|XP_389743.1| hypothetical protein FG09567.1 [Gibberella... 36 2.3
gb|AAP95014.1| putative histone deacetylase [Cochliobolus c... 36 2.3
gb|AAA60354.1| polyposis locus-encoded protein 34 8.6
>gb|AAB41671.1| adenomatous polyposis coli [Xenopus laevis]
Length = 2829
Score = 39.3 bits (90), Expect = 0.21
Identities = 41/128 (32%), Positives = 52/128 (40%), Gaps = 12/128 (9%)
Frame = +2
Query: 812 TFIWKKGRPLNRRSALESAGLTTTYSYDRRF*PRPRQWYKPLTLPRNHD*IDLCPTTH-- 985
TFI + P RR ESA + S R P Q P P D + +TH
Sbjct: 2439 TFIKEAPSPTLRRKLEESASFESLSSSSRADSPPRSQTQTPALSPSLPD---MALSTHSI 2495
Query: 986 QKAATTLTPPALYVAAKERVPRLNN---RGIQQSPNRPPLSAINT-------NSELRPEV 1135
Q PP L AA+ R + R +SP+R P++ T +S P V
Sbjct: 2496 QAGGWRKMPPNLNPAAEHGDSRRRHDISRSHSESPSRLPITRSGTWKREHSKHSSSLPRV 2555
Query: 1136 STWRRTTS 1159
STWRRT S
Sbjct: 2556 STWRRTGS 2563
>ref|NP_918865.1| P0458A05.23 [Oryza sativa (japonica
cultivar-group)]|gi|11875201|dbj|BAB19414.1| P0458A05.23
[Oryza sativa (japonica
cultivar-group)]|gi|15408679|dbj|BAB64088.1| B1157F09.13
[Oryza sativa (japonica cultivar-group)]
Length = 497
Score = 38.1 bits (87), Expect = 0.46
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +3
Query: 948 AITIKSTSVPP-RIKRLPPHSPH-RPFTWPQR--REFPVLTIEGYNSPQIVLPYPLSTQI 1115
A T ++S+PP R++RLPP PH RP PQR R F + + ++P P P S Q
Sbjct: 83 ASTSYASSLPPSRLRRLPPPPPHPRPIHGPQRVLRAFRLGSALSRSNPSCFTPSPSSPQH 142
Query: 1116 PSS 1124
P S
Sbjct: 143 PRS 145
>ref|XP_143054.4| similar to ring finger 111; arkadia [Mus musculus]
Length = 927
Score = 37.0 bits (84), Expect = 1.0
Identities = 39/140 (27%), Positives = 53/140 (37%), Gaps = 7/140 (5%)
Frame = +1
Query: 940 PPSQSRLNRPLS-HHASKGCHHTHPTGPLRGRKGESSPS*QSRDTTVPKSSSPIRYQHKF 1116
PP + L RPL HH + CHH+H P ++ PS D +P P+ H
Sbjct: 590 PPPYASLTRPLHLHHQASACHHSHGNAP-----PQTQPS-PEVDYVIP---HPVHAFHSQ 640
Query: 1117 RAQA*GFH----LAKNYLGSL*A-APTFISLARATSATEPPARGPSRVTLTP-RFSRLPE 1278
+ FH +LGS A P + A + PA PS L P + E
Sbjct: 641 ISSHATFHPVAPSPPTHLGSTAAPIPQHLPPAHQPISHHIPAPEPSAQRLHPHEVMQRKE 700
Query: 1279 LPYCFADSSPDRLHRSPCPY 1338
+ P R H P P+
Sbjct: 701 VQSRMMMQHPTRAHEQPLPH 720
>ref|NP_200276.1| formin homology 2 domain-containing protein / FH2 domain-containing
protein [Arabidopsis
thaliana]|gi|30696498|ref|NP_851191.1| formin homology 2
domain-containing protein / FH2 domain-containing protein
[Arabidopsis thaliana]|gi|9758957|dbj|BAB09344.1| unnamed
protein product [Arabidopsis thaliana]
Length = 900
Score = 36.2 bits (82), Expect = 1.7
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 861 NRRDLQLLTRMTDVSDRDHANGINHSPSLAITIKSTSVPPRIKRLPPHSPHRPFTWPQRR 1040
N + L+LL+ M D+ R+ A SPS S S PP+ R PP P RP + P R+
Sbjct: 120 NPKYLELLSSMLDIPRRNLATKPGSSPS-----PSPSRPPKRSRGPPRPPTRPKSPPPRK 174
Query: 1041 -EFP 1049
FP
Sbjct: 175 SSFP 178
>gb|AAS93430.1| formin homology 2 domain-containing protein 5 [Arabidopsis
thaliana]|gi|47716755|gb|AAT37554.1| formin homology 2
domain-containing protein 5 [Arabidopsis thaliana]
Length = 900
Score = 36.2 bits (82), Expect = 1.7
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 861 NRRDLQLLTRMTDVSDRDHANGINHSPSLAITIKSTSVPPRIKRLPPHSPHRPFTWPQRR 1040
N + L+LL+ M D+ R+ A SPS S S PP+ R PP P RP + P R+
Sbjct: 120 NPKYLELLSSMLDIPRRNLATKPGSSPS-----PSPSRPPKRSRGPPRPPTRPKSPPPRK 174
Query: 1041 -EFP 1049
FP
Sbjct: 175 ASFP 178
>gb|AAK68741.1| Unknown protein [Arabidopsis thaliana]|gi|22136490|gb|AAM91323.1|
unknown protein [Arabidopsis thaliana]
Length = 900
Score = 36.2 bits (82), Expect = 1.7
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 861 NRRDLQLLTRMTDVSDRDHANGINHSPSLAITIKSTSVPPRIKRLPPHSPHRPFTWPQRR 1040
N + L+LL+ M D+ R+ A SPS S S PP+ R PP P RP + P R+
Sbjct: 120 NPKYLELLSSMLDIPRRNLATKPGSSPS-----PSPSRPPKRSRGPPRPPTRPKSPPPRK 174
Query: 1041 -EFP 1049
FP
Sbjct: 175 SSFP 178
>ref|NP_998607.1| zgc:63802 [Danio rerio]|gi|34784016|gb|AAH58068.1| Zgc:63802 [Danio
rerio]
Length = 896
Score = 35.8 bits (81), Expect = 2.3
Identities = 38/126 (30%), Positives = 53/126 (41%), Gaps = 11/126 (8%)
Frame = +1
Query: 940 PPSQSRLNRPLSHHASKG--------CHHTHPTGPLRGRKGES--SPS*QSRDTTVPKSS 1089
PP + R N P A +G H T + GR G S SP Q R T+ S+
Sbjct: 700 PPPRHRRNSPNPPAAQRGRDTRSSPPAHTTRVSSSPPGRYGASGSSPQRQRRQTSPSHST 759
Query: 1090 SPIRYQHKFRAQA*GFHLAKNYLGSL*AAPTFISLARATSATEPPA-RGPSRVTLTPRFS 1266
PIR + K+ GS P ++R+ SA+ PPA + P+ V+ + S
Sbjct: 760 RPIRRVSRTPEP------RKSQRGSQSPPPERRQVSRSPSASPPPAQKRPASVSPSRSTS 813
Query: 1267 RLPELP 1284
R P P
Sbjct: 814 RSPPPP 819
>ref|XP_389743.1| hypothetical protein FG09567.1 [Gibberella zeae
PH-1]|gi|42554281|gb|EAA77124.1| hypothetical protein
FG09567.1 [Gibberella zeae PH-1]
Length = 866
Score = 35.8 bits (81), Expect = 2.3
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = +3
Query: 969 SVPPRIKRLPPHSPHRPFTWPQRREFPVLTIEGYN------SPQIVLPYPLSTQIPSSGL 1130
S+P I PP P +P + +FP T+ + SP +V P P + PSSG+
Sbjct: 536 SLPKEIT--PPRIPSPASKYPLQPQFPGPTMSRFEESVLQASPLLVTPNPKRLEKPSSGV 593
Query: 1131 RFPLGEELPR 1160
+ GE +P+
Sbjct: 594 VYQAGESIPK 603
>gb|AAP95014.1| putative histone deacetylase [Cochliobolus carbonum]
Length = 847
Score = 35.8 bits (81), Expect = 2.3
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Frame = +3
Query: 933 HSPSLAITIKSTSVPPRIKRLPPHSPHR----PFTWPQRREFPVLTIEGYNSPQI-VLPY 1097
HSPS K + P + R P S HR P +WP + LT ++SPQ+ V P
Sbjct: 51 HSPS-----KGPMLQPNVHRSNPGS-HRMTKSPSSWPDKMNASRLTPAQHSSPQVRVPPK 104
Query: 1098 PLSTQI-PSS--GL----RFPLGEELPRISLSGADLH 1187
P ST + P+S GL R ELP ++++ D+H
Sbjct: 105 PRSTLVYPTSKTGLVYDPRMRFHAELPDMNINPDDIH 141
>gb|AAA60354.1| polyposis locus-encoded protein
Length = 2743
Score = 33.9 bits (76), Expect = 8.6
Identities = 37/131 (28%), Positives = 50/131 (37%), Gaps = 15/131 (11%)
Frame = +2
Query: 812 TFIWKKGRPLNRRSALESAGLTTTYSYDRRF*PRPRQWYKPLTLPRNHD*IDLCPTTH-- 985
TFI + P RR ESA + R P Q P+ P D + +TH
Sbjct: 2342 TFIKEAPSPTLRRKLEESASFESLSPSSRPASPTRSQAQTPVLSPSLPD---MSLSTHSS 2398
Query: 986 ------QKAATTLTPPALYVAAKERVPRLNNRGIQQSPNRPPLSAINT-------NSELR 1126
+K L+P Y + R +SP+R P++ T +S
Sbjct: 2399 VQAGGWRKLPPNLSPTIEYNDGRPAKRHDIARSHSESPSRLPINRSGTWKREHSKHSSSL 2458
Query: 1127 PEVSTWRRTTS 1159
P VSTWRRT S
Sbjct: 2459 PRVSTWRRTGS 2469
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 129
effective length of database: 385,219,476
effective search space used: 123270232320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)