BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= CF652086.f
         (1351 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB41671.1|  adenomatous polyposis coli [Xenopus laevis]        39   0.21 
ref|NP_918865.1|  P0458A05.23 [Oryza sativa (japonica cultiv...    38   0.46 
ref|XP_143054.4|  similar to ring finger 111; arkadia [Mus m...    37   1.0  
ref|NP_200276.1|  formin homology 2 domain-containing protei...    36   1.7  
gb|AAS93430.1|  formin homology 2 domain-containing protein ...    36   1.7  
gb|AAK68741.1|  Unknown protein [Arabidopsis thaliana]|gi|22...    36   1.7  
ref|NP_998607.1|  zgc:63802 [Danio rerio]|gi|34784016|gb|AAH...    36   2.3  
ref|XP_389743.1|  hypothetical protein FG09567.1 [Gibberella...    36   2.3  
gb|AAP95014.1|  putative histone deacetylase [Cochliobolus c...    36   2.3  
gb|AAA60354.1|  polyposis locus-encoded protein                    34   8.6  
>gb|AAB41671.1| adenomatous polyposis coli [Xenopus laevis]
          Length = 2829

 Score = 39.3 bits (90), Expect = 0.21
 Identities = 41/128 (32%), Positives = 52/128 (40%), Gaps = 12/128 (9%)
 Frame = +2

Query: 812  TFIWKKGRPLNRRSALESAGLTTTYSYDRRF*PRPRQWYKPLTLPRNHD*IDLCPTTH-- 985
            TFI +   P  RR   ESA   +  S  R   P   Q   P   P   D   +  +TH  
Sbjct: 2439 TFIKEAPSPTLRRKLEESASFESLSSSSRADSPPRSQTQTPALSPSLPD---MALSTHSI 2495

Query: 986  QKAATTLTPPALYVAAKERVPRLNN---RGIQQSPNRPPLSAINT-------NSELRPEV 1135
            Q       PP L  AA+    R  +   R   +SP+R P++   T       +S   P V
Sbjct: 2496 QAGGWRKMPPNLNPAAEHGDSRRRHDISRSHSESPSRLPITRSGTWKREHSKHSSSLPRV 2555

Query: 1136 STWRRTTS 1159
            STWRRT S
Sbjct: 2556 STWRRTGS 2563
>ref|NP_918865.1| P0458A05.23 [Oryza sativa (japonica
            cultivar-group)]|gi|11875201|dbj|BAB19414.1| P0458A05.23
            [Oryza sativa (japonica
            cultivar-group)]|gi|15408679|dbj|BAB64088.1| B1157F09.13
            [Oryza sativa (japonica cultivar-group)]
          Length = 497

 Score = 38.1 bits (87), Expect = 0.46
 Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
 Frame = +3

Query: 948  AITIKSTSVPP-RIKRLPPHSPH-RPFTWPQR--REFPVLTIEGYNSPQIVLPYPLSTQI 1115
            A T  ++S+PP R++RLPP  PH RP   PQR  R F + +    ++P    P P S Q 
Sbjct: 83   ASTSYASSLPPSRLRRLPPPPPHPRPIHGPQRVLRAFRLGSALSRSNPSCFTPSPSSPQH 142

Query: 1116 PSS 1124
            P S
Sbjct: 143  PRS 145
>ref|XP_143054.4| similar to ring finger 111; arkadia [Mus musculus]
          Length = 927

 Score = 37.0 bits (84), Expect = 1.0
 Identities = 39/140 (27%), Positives = 53/140 (37%), Gaps = 7/140 (5%)
 Frame = +1

Query: 940  PPSQSRLNRPLS-HHASKGCHHTHPTGPLRGRKGESSPS*QSRDTTVPKSSSPIRYQHKF 1116
            PP  + L RPL  HH +  CHH+H   P      ++ PS    D  +P    P+   H  
Sbjct: 590  PPPYASLTRPLHLHHQASACHHSHGNAP-----PQTQPS-PEVDYVIP---HPVHAFHSQ 640

Query: 1117 RAQA*GFH----LAKNYLGSL*A-APTFISLARATSATEPPARGPSRVTLTP-RFSRLPE 1278
             +    FH        +LGS  A  P  +  A    +   PA  PS   L P    +  E
Sbjct: 641  ISSHATFHPVAPSPPTHLGSTAAPIPQHLPPAHQPISHHIPAPEPSAQRLHPHEVMQRKE 700

Query: 1279 LPYCFADSSPDRLHRSPCPY 1338
            +        P R H  P P+
Sbjct: 701  VQSRMMMQHPTRAHEQPLPH 720
>ref|NP_200276.1| formin homology 2 domain-containing protein / FH2 domain-containing
            protein [Arabidopsis
            thaliana]|gi|30696498|ref|NP_851191.1| formin homology 2
            domain-containing protein / FH2 domain-containing protein
            [Arabidopsis thaliana]|gi|9758957|dbj|BAB09344.1| unnamed
            protein product [Arabidopsis thaliana]
          Length = 900

 Score = 36.2 bits (82), Expect = 1.7
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 861  NRRDLQLLTRMTDVSDRDHANGINHSPSLAITIKSTSVPPRIKRLPPHSPHRPFTWPQRR 1040
            N + L+LL+ M D+  R+ A     SPS      S S PP+  R PP  P RP + P R+
Sbjct: 120  NPKYLELLSSMLDIPRRNLATKPGSSPS-----PSPSRPPKRSRGPPRPPTRPKSPPPRK 174

Query: 1041 -EFP 1049
              FP
Sbjct: 175  SSFP 178
>gb|AAS93430.1| formin homology 2 domain-containing protein 5 [Arabidopsis
            thaliana]|gi|47716755|gb|AAT37554.1| formin homology 2
            domain-containing protein 5 [Arabidopsis thaliana]
          Length = 900

 Score = 36.2 bits (82), Expect = 1.7
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 861  NRRDLQLLTRMTDVSDRDHANGINHSPSLAITIKSTSVPPRIKRLPPHSPHRPFTWPQRR 1040
            N + L+LL+ M D+  R+ A     SPS      S S PP+  R PP  P RP + P R+
Sbjct: 120  NPKYLELLSSMLDIPRRNLATKPGSSPS-----PSPSRPPKRSRGPPRPPTRPKSPPPRK 174

Query: 1041 -EFP 1049
              FP
Sbjct: 175  ASFP 178
>gb|AAK68741.1| Unknown protein [Arabidopsis thaliana]|gi|22136490|gb|AAM91323.1|
            unknown protein [Arabidopsis thaliana]
          Length = 900

 Score = 36.2 bits (82), Expect = 1.7
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 861  NRRDLQLLTRMTDVSDRDHANGINHSPSLAITIKSTSVPPRIKRLPPHSPHRPFTWPQRR 1040
            N + L+LL+ M D+  R+ A     SPS      S S PP+  R PP  P RP + P R+
Sbjct: 120  NPKYLELLSSMLDIPRRNLATKPGSSPS-----PSPSRPPKRSRGPPRPPTRPKSPPPRK 174

Query: 1041 -EFP 1049
              FP
Sbjct: 175  SSFP 178
>ref|NP_998607.1| zgc:63802 [Danio rerio]|gi|34784016|gb|AAH58068.1| Zgc:63802 [Danio
            rerio]
          Length = 896

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 38/126 (30%), Positives = 53/126 (41%), Gaps = 11/126 (8%)
 Frame = +1

Query: 940  PPSQSRLNRPLSHHASKG--------CHHTHPTGPLRGRKGES--SPS*QSRDTTVPKSS 1089
            PP + R N P    A +G         H T  +    GR G S  SP  Q R T+   S+
Sbjct: 700  PPPRHRRNSPNPPAAQRGRDTRSSPPAHTTRVSSSPPGRYGASGSSPQRQRRQTSPSHST 759

Query: 1090 SPIRYQHKFRAQA*GFHLAKNYLGSL*AAPTFISLARATSATEPPA-RGPSRVTLTPRFS 1266
             PIR   +           K+  GS    P    ++R+ SA+ PPA + P+ V+ +   S
Sbjct: 760  RPIRRVSRTPEP------RKSQRGSQSPPPERRQVSRSPSASPPPAQKRPASVSPSRSTS 813

Query: 1267 RLPELP 1284
            R P  P
Sbjct: 814  RSPPPP 819
>ref|XP_389743.1| hypothetical protein FG09567.1 [Gibberella zeae
            PH-1]|gi|42554281|gb|EAA77124.1| hypothetical protein
            FG09567.1 [Gibberella zeae PH-1]
          Length = 866

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
 Frame = +3

Query: 969  SVPPRIKRLPPHSPHRPFTWPQRREFPVLTIEGYN------SPQIVLPYPLSTQIPSSGL 1130
            S+P  I   PP  P     +P + +FP  T+  +       SP +V P P   + PSSG+
Sbjct: 536  SLPKEIT--PPRIPSPASKYPLQPQFPGPTMSRFEESVLQASPLLVTPNPKRLEKPSSGV 593

Query: 1131 RFPLGEELPR 1160
             +  GE +P+
Sbjct: 594  VYQAGESIPK 603
>gb|AAP95014.1| putative histone deacetylase [Cochliobolus carbonum]
          Length = 847

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
 Frame = +3

Query: 933  HSPSLAITIKSTSVPPRIKRLPPHSPHR----PFTWPQRREFPVLTIEGYNSPQI-VLPY 1097
            HSPS     K   + P + R  P S HR    P +WP +     LT   ++SPQ+ V P 
Sbjct: 51   HSPS-----KGPMLQPNVHRSNPGS-HRMTKSPSSWPDKMNASRLTPAQHSSPQVRVPPK 104

Query: 1098 PLSTQI-PSS--GL----RFPLGEELPRISLSGADLH 1187
            P ST + P+S  GL    R     ELP ++++  D+H
Sbjct: 105  PRSTLVYPTSKTGLVYDPRMRFHAELPDMNINPDDIH 141
>gb|AAA60354.1| polyposis locus-encoded protein
          Length = 2743

 Score = 33.9 bits (76), Expect = 8.6
 Identities = 37/131 (28%), Positives = 50/131 (37%), Gaps = 15/131 (11%)
 Frame = +2

Query: 812  TFIWKKGRPLNRRSALESAGLTTTYSYDRRF*PRPRQWYKPLTLPRNHD*IDLCPTTH-- 985
            TFI +   P  RR   ESA   +     R   P   Q   P+  P   D   +  +TH  
Sbjct: 2342 TFIKEAPSPTLRRKLEESASFESLSPSSRPASPTRSQAQTPVLSPSLPD---MSLSTHSS 2398

Query: 986  ------QKAATTLTPPALYVAAKERVPRLNNRGIQQSPNRPPLSAINT-------NSELR 1126
                  +K    L+P   Y   +        R   +SP+R P++   T       +S   
Sbjct: 2399 VQAGGWRKLPPNLSPTIEYNDGRPAKRHDIARSHSESPSRLPINRSGTWKREHSKHSSSL 2458

Query: 1127 PEVSTWRRTTS 1159
            P VSTWRRT S
Sbjct: 2459 PRVSTWRRTGS 2469
  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 129
effective length of database: 385,219,476
effective search space used: 123270232320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results