BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= CB259810.f
         (101 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_195505.1|  expressed protein [Arabidopsis thaliana]|g...    62   3e-09
ref|NP_629056.1|  putative membrane protein [Streptomyces co...    32   3.9  

>ref|NP_195505.1| expressed protein [Arabidopsis thaliana]|gi|7485864|pir||T05619
           hypothetical protein F20D10.40 - Arabidopsis
           thaliana|gi|4467098|emb|CAB37532.1| putative protein
           [Arabidopsis thaliana]|gi|7270775|emb|CAB80457.1|
           putative protein [Arabidopsis thaliana]
          Length = 673

 Score = 62.4 bits (150), Expect = 3e-09
 Identities = 29/33 (87%), Positives = 29/33 (87%)
 Frame = +1

Query: 1   YTGCTKLSLLHPPMVAQTRPRTTQKAFVETNPE 99
           YT CTKLSLLHP MVAQ RPRTTQKAFV TNPE
Sbjct: 7   YTACTKLSLLHPSMVAQIRPRTTQKAFVVTNPE 39



>ref|NP_629056.1| putative membrane protein [Streptomyces coelicolor
           A3(2)]|gi|13162092|emb|CAC33068.1| putative membrane
           protein [Streptomyces coelicolor A3(2)]
          Length = 67

 Score = 32.0 bits (71), Expect = 3.9
 Identities = 12/27 (44%), Positives = 16/27 (58%)
 Frame = +2

Query: 5   LAAPSFLYYTLLWLLKPDQEQHKRRSW 85
           L  P FL Y  LW+L P +E+  R +W
Sbjct: 41  LPGPQFLLYLALWILLPSEEKAARTAW 67



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.316    0.129    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 9
effective length of database: 612,655,236
effective search space used: 14703725664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)