BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CB258694.f
(101 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF82805.1| actin [Helianthus annuus] 49 3e-05
pir||ATSY3 actin - soybean|gi|18532|emb|CAA23728.1| actin [... 49 3e-05
sp|P02580|ACT3_SOYBN ACTIN 3 49 3e-05
gb|AAL66196.1| actin [Pyrus communis] 48 5e-05
emb|CAE51207.1| putative actin [Lolium multiflorum] 47 9e-05
gb|AAB62879.1| actin 3 [Cycas revoluta] 47 9e-05
sp|P30171|ACTB_SOLTU ACTIN 97|gi|100417|pir||S20098 actin 9... 47 9e-05
gb|AAL89712.1| actin [Alonsoa meridionalis] 47 9e-05
gb|AAP73462.1| actin [Gossypium hirsutum] 47 9e-05
gb|AAP73457.1| actin [Gossypium hirsutum] 47 9e-05
>gb|AAF82805.1| actin [Helianthus annuus]
Length = 377
Score = 48.9 bits (115), Expect = 3e-05
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = +1
Query: 7 YTGPIYKGDAFPYAILPLDLAGRDLPDSLMK 99
+T PIYKG A P+AIL LDLAGRDL DSLMK
Sbjct: 163 HTVPIYKGYALPHAILRLDLAGRDLTDSLMK 193
>pir||ATSY3 actin - soybean|gi|18532|emb|CAA23728.1| actin [Glycine
max]|gi|223413|prf||0804316A actin
Length = 376
Score = 48.9 bits (115), Expect = 3e-05
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +1
Query: 7 YTGPIYKGDAFPYAILPLDLAGRDLPDSLMK 99
+T PIY+GDA P+AIL LDLAGRDL D LMK
Sbjct: 162 HTVPIYEGDALPHAILRLDLAGRDLTDHLMK 192
>sp|P02580|ACT3_SOYBN ACTIN 3
Length = 376
Score = 48.9 bits (115), Expect = 3e-05
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +1
Query: 7 YTGPIYKGDAFPYAILPLDLAGRDLPDSLMK 99
+T PIY+GDA P+AIL LDLAGRDL D LMK
Sbjct: 162 HTVPIYEGDALPHAILRLDLAGRDLTDHLMK 192
>gb|AAL66196.1| actin [Pyrus communis]
Length = 334
Score = 48.1 bits (113), Expect = 5e-05
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +1
Query: 7 YTGPIYKGDAFPYAILPLDLAGRDLPDSLMK 99
YT PIY+G A P+AIL LDLAGRDL D+LMK
Sbjct: 120 YTVPIYEGYALPHAILRLDLAGRDLTDALMK 150
>emb|CAE51207.1| putative actin [Lolium multiflorum]
Length = 255
Score = 47.4 bits (111), Expect = 9e-05
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +1
Query: 7 YTGPIYKGDAFPYAILPLDLAGRDLPDSLMK 99
+T PIY+G A P+AIL LDLAGRDL DSLMK
Sbjct: 83 HTVPIYEGYALPHAILRLDLAGRDLTDSLMK 113
>gb|AAB62879.1| actin 3 [Cycas revoluta]
Length = 336
Score = 47.4 bits (111), Expect = 9e-05
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +1
Query: 7 YTGPIYKGDAFPYAILPLDLAGRDLPDSLMK 99
+T PIY+G A P+AIL LDLAGRDL DSLMK
Sbjct: 143 HTVPIYEGYALPHAILRLDLAGRDLTDSLMK 173
>sp|P30171|ACTB_SOLTU ACTIN 97|gi|100417|pir||S20098 actin 97 -
potato|gi|21544|emb|CAA39280.1| actin [Solanum
tuberosum]
Length = 377
Score = 47.4 bits (111), Expect = 9e-05
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +1
Query: 7 YTGPIYKGDAFPYAILPLDLAGRDLPDSLMK 99
+T PIY+G A P+AIL LDLAGRDL DSLMK
Sbjct: 163 HTVPIYEGYALPHAILRLDLAGRDLTDSLMK 193
>gb|AAL89712.1| actin [Alonsoa meridionalis]
Length = 182
Score = 47.4 bits (111), Expect = 9e-05
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +1
Query: 7 YTGPIYKGDAFPYAILPLDLAGRDLPDSLMK 99
+T PIY+G A P+AIL LDLAGRDL DSLMK
Sbjct: 12 HTVPIYEGYALPHAILRLDLAGRDLTDSLMK 42
>gb|AAP73462.1| actin [Gossypium hirsutum]
Length = 377
Score = 47.4 bits (111), Expect = 9e-05
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +1
Query: 7 YTGPIYKGDAFPYAILPLDLAGRDLPDSLMK 99
+T PIY+G A P+AIL LDLAGRDL DSLMK
Sbjct: 163 HTVPIYEGYALPHAILRLDLAGRDLTDSLMK 193
>gb|AAP73457.1| actin [Gossypium hirsutum]
Length = 377
Score = 47.4 bits (111), Expect = 9e-05
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +1
Query: 7 YTGPIYKGDAFPYAILPLDLAGRDLPDSLMK 99
+T PIY+G A P+AIL LDLAGRDL DSLMK
Sbjct: 163 HTVPIYEGYALPHAILRLDLAGRDLTDSLMK 193
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 9
effective length of database: 612,655,236
effective search space used: 14703725664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)