BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BE039559.f
(1593 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC87289.1| unnamed protein product [Homo sapiens] 48 7e-04
ref|NP_297916.1| hypothetical protein XF0626 [Xylella fasti... 46 0.002
pir||S54157 extensin-like protein - cowpea (fragment) 44 0.008
dbj|BAC87052.1| unnamed protein product [Homo sapiens] 44 0.008
emb|CAF90478.1| unnamed protein product [Tetraodon nigrovir... 44 0.010
dbj|BAC05058.1| unnamed protein product [Homo sapiens] 43 0.018
pir||I46884 T-cell receptor beta chain - rabbit (fragment)|... 40 0.11
dbj|BAC04906.1| unnamed protein product [Homo sapiens] 40 0.19
dbj|BAC04859.1| unnamed protein product [Homo sapiens] 39 0.33
dbj|BAC85667.1| unnamed protein product [Homo sapiens] 38 0.57
>dbj|BAC87289.1| unnamed protein product [Homo sapiens]
Length = 377
Score = 47.8 bits (112), Expect = 7e-04
Identities = 69/282 (24%), Positives = 97/282 (33%), Gaps = 63/282 (22%)
Frame = +2
Query: 59 TXPTSSHTHVCVITLPDSTWTSV*SSAIYAXXXXXXXXXXLTPRXSXPTFTLDSHLPHHM 238
T TSSH+H C T T + + T S TFT SH P H
Sbjct: 83 TQCTSSHSHTCSHT-HSLTCPHTLAPTRHTHSHACTHPHVQTHTASAYTFTTHSHTPGHT 141
Query: 239 F--QHLNSNFVVLDNHYTDSSLHDLIRTTRLHTL---YC-----HXSHL------TXPLS 370
HL +H ++ H T HTL YC H HL P
Sbjct: 142 HSCSHLIHTHSHAHSHPPNAPTH-----THAHTLRPTYCPHTRSHPMHLLTLIRPLTPAH 196
Query: 371 THI---SH-------NXQYTTDHRHNAVTQYTIICT-------YQFLSHT---------- 469
TH+ SH + +T H H + T CT Y HT
Sbjct: 197 THLTPGSHTHVHTPAHTPHTRSHNHTCLYLLTHACTNTPAYTSYTAHPHTLHCSPSHTHA 256
Query: 470 --YXHHLSPHMRYTHLSA------------------XHLTPYSXHYFSCPTQHXHINXLH 589
+ H L+PH TH+ + H++ YS + + HI LH
Sbjct: 257 PAHTHMLTPHHSLTHIHSHMIAPTHTSHTLARTHLLTHISRYSAPHAHTCSHTSHITQLH 316
Query: 590 XASTVLTHLYRTSTYTVALRSTLITYAHILYAITXYSIHTST 715
+ +H + +T+ R+ +T+AH+ + T IHT T
Sbjct: 317 --TRPCSHTCAHTPHTIHSRTHPLTHAHVC-SHTCSPIHTHT 355
>ref|NP_297916.1| hypothetical protein XF0626 [Xylella fastidiosa
9a5c]|gi|11361512|pir||H82781 hypothetical protein
XF0626 [imported] - Xylella fastidiosa (strain
9a5c)|gi|9105500|gb|AAF83436.1| hypothetical protein
XF0626 [Xylella fastidiosa 9a5c]
Length = 203
Score = 46.2 bits (108), Expect = 0.002
Identities = 34/122 (27%), Positives = 52/122 (41%)
Frame = +2
Query: 179 LTPRXSXPTFTLDSHLPHHMFQHLNSNFVVLDNHYTDSSLHDLIRTTRLHTLYCHXSHLT 358
LTP S T SHL H HL + L H + + H T L H SHLT
Sbjct: 68 LTPHTSHLT-PHTSHLTPHT-SHLTPHTSHLTPHTSHLTPHTSHLTPHTSHLTPHTSHLT 125
Query: 359 XPLSTHISHNXQYTTDHRHNAVTQYTIICTYQFLSHTYXHHLSPHMRYTHLSAXHLTPYS 538
P ++H++ + + T H + + + + + HL+PH + HLTP++
Sbjct: 126 -PHTSHLTPHTSHLTPHTSHLTPHTSHLTPHTLHLTPHTSHLTPHTSHLTPHTSHLTPHT 184
Query: 539 XH 544
H
Sbjct: 185 SH 186
Score = 45.8 bits (107), Expect = 0.003
Identities = 52/186 (27%), Positives = 69/186 (36%), Gaps = 5/186 (2%)
Frame = +2
Query: 2 VIQTRHVXXXPTTXEXXPXTXPTSSHT-----HVCVITLPDSTWTSV*SSAIYAXXXXXX 166
V T H+ P T P T + HT H +T S T S
Sbjct: 27 VTHTSHLI--PHTSYLIPHTSHLTPHTSHLTPHTSHLTPHTSHLTPHTSHLTPHTSHLTP 84
Query: 167 XXXXLTPRXSXPTFTLDSHLPHHMFQHLNSNFVVLDNHYTDSSLHDLIRTTRLHTLYCHX 346
LTP S T SHL H HL + L H + + H T L H
Sbjct: 85 HTSHLTPHTSHLT-PHTSHLTPHT-SHLTPHTSHLTPHTSHLTPHTSHLTPHTSHLTPHT 142
Query: 347 SHLTXPLSTHISHNXQYTTDHRHNAVTQYTIICTYQFLSHTYXHHLSPHMRYTHLSAXHL 526
SHLT P ++H++ + + T H T + T HT HL+PH + HL
Sbjct: 143 SHLT-PHTSHLTPHTLHLTPH-----TSHLTPHTSHLTPHT--SHLTPHTSHLTPHTSHL 194
Query: 527 TPYSXH 544
TP++ H
Sbjct: 195 TPHTSH 200
>pir||S54157 extensin-like protein - cowpea (fragment)
Length = 279
Score = 44.3 bits (103), Expect = 0.008
Identities = 50/223 (22%), Positives = 84/223 (37%)
Frame = +2
Query: 200 PTFTLDSHLPHHMFQHLNSNFVVLDNHYTDSSLHDLIRTTRLHTLYCHXSHLTXPLSTHI 379
P FT HL H + HL + + H+ L+ T H L+ HL +S H
Sbjct: 73 PMFT-SLHLLHLLPHHLP---MCISPHHHHLLHRHLLMFTSHHLLHLLPHHLHMCISRHH 128
Query: 380 SHNXQYTTDHRHNAVTQYTIICTYQFLSHTYXHHLSPHMRYTHLSAXHLTPYSXHYFSCP 559
H T+ H H+ + + + T L H HHL HM +H
Sbjct: 129 HHLPMSTSPHHHHLLHHHLPMSTSHPLLHLLLHHL--HMCISH----------------- 169
Query: 560 TQHXHINXLHXASTVLTHLYRTSTYTVALRSTLITYAHILYAITXYSIHTSTEHN*LILD 739
H H+ L + HL + + + ++L H+L+ + + + H+ +L
Sbjct: 170 -HHHHLLHLRLPTFTSPHLLHLLPHHLPMFTSL----HLLHLLPHHLPMCISPHHHHLL- 223
Query: 740 IFSLYLFYVQHIFTHILRHHIXFXSITLRIYXHXPHXICILNT 868
L + H H+L HH+ R + H H +++T
Sbjct: 224 -HHHLLMFTSHHLLHLLPHHLHM--CISRHHHHLLHHHLLMST 263
Score = 34.3 bits (77), Expect = 8.2
Identities = 47/215 (21%), Positives = 81/215 (36%), Gaps = 29/215 (13%)
Frame = +2
Query: 374 HISHNXQYT--TDHRHNAVTQYTIICTYQFLSHTYXHHLSPHM----RYTHLSAXHLTPY 535
H+ H+ + + HRH+ + + ++ T L H HHL HM + HL HL +
Sbjct: 2 HLLHHHLHMCISHHRHHLLHHHLLMFTSHHLLHLLPHHL--HMCISRHHHHLLHHHLLMF 59
Query: 536 SXHYFSCPTQH-----XHINXLHXASTVLTHLYRTSTYTVALRSTLITYAHILYAITXYS 700
+ H+ H ++ LH L + + R L+ +H L + +
Sbjct: 60 TSHHLLHLLPHHLPMFTSLHLLHLLPHHLPMCISPHHHHLLHRHLLMFTSHHLLHLLPHH 119
Query: 701 IH-------------TSTEHN*LILDIFSLYLFYVQHIFTHILRHHIXFXSITLRIYXHX 841
+H TS H+ L+ + H H+L HH+ + I H
Sbjct: 120 LHMCISRHHHHLPMSTSPHHHHLLHHHLPM---STSHPLLHLLLHHLH-----MCISHHH 171
Query: 842 PHXICI-LNTXTIQESL----HXRQVVSYLHISHI 931
H + + L T T L H + + LH+ H+
Sbjct: 172 HHLLHLRLPTFTSPHLLHLLPHHLPMFTSLHLLHL 206
>dbj|BAC87052.1| unnamed protein product [Homo sapiens]
Length = 415
Score = 44.3 bits (103), Expect = 0.008
Identities = 51/219 (23%), Positives = 87/219 (39%), Gaps = 17/219 (7%)
Frame = +2
Query: 233 HMFQHLNSNFVVLDNHYTDSSLHDLIRTTRLHTLYCHXSHLTXPLSTHISHNXQYTTDHR 412
H H++ + + N +T + H T +T+ C +H+ H +H +
Sbjct: 112 HTHAHIHIHVHIHMNIHTHTCTHIYTCT---YTVVCTHTHMHIYTHMH-THTCIHIHSDT 167
Query: 413 HNAVTQYTIICTYQFL---SHTYXH-HLSPHMR-YTHLSAXHLTPYSXHYFSCPTQHXHI 577
H + +T+ CT + +HT+ H H+ H R YTH+ LT H ++ H H
Sbjct: 168 HLHIYTHTLTCTQTQIHTCTHTHIHIHMPTHTRTYTHMHTHTLTCTQIHIYTHIYMHAH- 226
Query: 578 NXLHXASTVLTHLYRTSTYTVA-------LRSTLITYAHILYAITXY---SIHTSTE-HN 724
+H TH + TYT A + + TY H+ + Y IHT T H+
Sbjct: 227 TPIHSHIHTWTHTH-AHTYTHAHIHVCTHIHMHIHTYTHMHTHMDTYPHTHIHTCTHMHS 285
Query: 725 *LILDIFS-LYLFYVQHIFTHILRHHIXFXSITLRIYXH 838
++ + ++ H TH + I + Y H
Sbjct: 286 HAHINTHTHAHIHMHMHTHTHTHTYTHAHAHIHINTYMH 324
>emb|CAF90478.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1216
Score = 43.9 bits (102), Expect = 0.010
Identities = 34/130 (26%), Positives = 52/130 (39%), Gaps = 3/130 (2%)
Frame = +2
Query: 341 HXSHLTXPLSTHISHNXQYTTDHRHNAVTQYTIICTYQFLSHTYXHHLSPHMRYTHLSAX 520
H + + TH +H Y H H + ++ HT H+ RYTH +
Sbjct: 800 HHTRIEHFRGTHTTHTEHYRGTHTHTHIG-----ALQRYTHHT---HIGALQRYTHHTHG 851
Query: 521 HLTPYSXHYFSCPTQHXHINXL-HXASTVLTHLYRTS-TYTVALRSTLITYA-HILYAIT 691
L Y+ H ++ H + H T TH + T+ +T RST + H A+
Sbjct: 852 ALQRYTHHTHGALQRYTHHTRMEHYRGTHTTHAWSTTEVHTPHTRSTTEVHTPHTHGALQ 911
Query: 692 XYSIHTSTEH 721
Y+ HT EH
Sbjct: 912 RYTHHTRMEH 921
>dbj|BAC05058.1| unnamed protein product [Homo sapiens]
Length = 225
Score = 43.1 bits (100), Expect = 0.018
Identities = 42/171 (24%), Positives = 64/171 (36%), Gaps = 14/171 (8%)
Frame = +2
Query: 329 TLYCHXSHLTXPLSTHISHNXQYTTDHRHNAVTQYTIICTYQFLSHTYXHHLSP---HMR 499
T + H H +TH H+ +T H T T I +Y+ +HT L+ H
Sbjct: 18 TYHSHNPHSPTIHNTHTHHSHTHTIWTHHTHTTHTTHINSYKAFTHTTHTPLTSTHLHTP 77
Query: 500 YTHLSAXHLTPYSXHYFSCPTQHX---HINXLHXASTVLTHLYRTSTYTVALRSTLITYA 670
TH H+T +S TQH H + H + H T ++ + I +
Sbjct: 78 LTHTPRTHITHHS------QTQHTLLIHQSYTHTPTHHTQHKPHMHTPFTSINTPCIHHT 131
Query: 671 HI-LYAIT-------XYSIHTSTEHN*LILDIFSLYLFYVQHIFTHILRHH 799
H L I+ Y+ HT +H + +L + H TH R H
Sbjct: 132 HAPLTEISPHKPLKPTYTPHTHHKHTSHYSYTYHRHLSHTTHTHTHTPRTH 182
Score = 35.8 bits (81), Expect = 2.8
Identities = 28/108 (25%), Positives = 44/108 (39%), Gaps = 7/108 (6%)
Frame = +2
Query: 203 TFTLDSHLPHH-MFQH---LNSNFVVLDNHYTDSSLHDLIRTTRLHTLYCHXSHLT-XPL 367
T T +H+ HH QH ++ ++ H+T H T ++T H +H +
Sbjct: 79 THTPRTHITHHSQTQHTLLIHQSYTHTPTHHTQHKPHMHTPFTSINTPCIHHTHAPLTEI 138
Query: 368 STHISHNXQYT--TDHRHNAVTQYTIICTYQFLSHTYXHHLSPHMRYT 505
S H YT T H+H + YT +HT+ H H +T
Sbjct: 139 SPHKPLKPTYTPHTHHKHTSHYSYTYHRHLSHTTHTHTHTPRTHKPHT 186
Score = 34.3 bits (77), Expect = 8.2
Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 14/139 (10%)
Frame = +2
Query: 464 HTYXHHLSPHMRYTHLSAXHLTPYSXHYFSCPTQHXHINXL---HXASTVLTHL--YRTS 628
HT H + + H++ P+S + T H H + + H +T TH+ Y+
Sbjct: 2 HTIHTHTTHTIHTQHITYHSHNPHSPTIHNTHTHHSHTHTIWTHHTHTTHTTHINSYKAF 61
Query: 629 TYTVALRSTLITYAHILYAI-----TXYSIHTSTEHN*LILDIFSLYLFYVQHIFTHILR 793
T+T T +T H+ + T + H+ T+H LI ++ H TH +
Sbjct: 62 THTT---HTPLTSTHLHTPLTHTPRTHITHHSQTQHTLLIHQSYT-------HTPTHHTQ 111
Query: 794 H----HIXFXSITLRIYXH 838
H H F SI H
Sbjct: 112 HKPHMHTPFTSINTPCIHH 130
>pir||I46884 T-cell receptor beta chain - rabbit
(fragment)|gi|488328|gb|AAA82093.1| unknown protein
Length = 269
Score = 40.4 bits (93), Expect = 0.11
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 8/104 (7%)
Frame = +2
Query: 293 SLHDLIRTTRLHT-----LYCHXSHLTXPLSTHISHNXQYTTDHRHNAVTQYTIICTYQF 457
+L + RTT +HT Y H LT ++ + + H H +T +C Y
Sbjct: 15 TLTHITRTTHMHTRVHPHTYAHTHELTLTCASTYLNIRAHVHTHMHTCTHMHTQMCAYSH 74
Query: 458 LS---HTYXHHLSPHMRYTHLSAXHLTPYSXHYFSCPTQHXHIN 580
HT +P Y H A LT + H H H++
Sbjct: 75 TREYMHTLTQTCAPTHAYAHTYAHTLTHANSHVHLHGHMHTHVH 118
>dbj|BAC04906.1| unnamed protein product [Homo sapiens]
Length = 226
Score = 39.7 bits (91), Expect = 0.19
Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 9/163 (5%)
Frame = +2
Query: 335 YCHXSHLTXPLS-THISHNXQYTTDHRHNAVTQYTIICTYQFLSHTYXHHLS-PHMR-YT 505
+ H T PL+ THI H +T H T I L+H + H + HM +T
Sbjct: 37 HSHPLSHTYPLTLTHI-HTHPHTHISTHTHPLTVTHITHTHLLTHIHSHSFTHAHMHSHT 95
Query: 506 HLSAXHLTPYSXHYFSCPTQHXHINXLHXASTVLTHLY-----RTSTYT-VALRSTLITY 667
H+ H +S + + PT + H ++ +TH + TYT + + +T+
Sbjct: 96 HI---HSHTHSHIHSNTPTHTHPLTSTHIQTSTVTHTHSHTHAHKHTYTHTSTHTHPLTF 152
Query: 668 AHILYAITXYSIHTSTEHN*LILDIFSLYLFYVQHIFTHILRH 796
H Y IT HT T + L ++ H TH L H
Sbjct: 153 TH-TYPITHPLTHTPTHTHTHALTHSHTHIHTHMHSHTHPLTH 194
Score = 34.7 bits (78), Expect = 6.3
Identities = 40/156 (25%), Positives = 64/156 (40%), Gaps = 16/156 (10%)
Frame = +2
Query: 218 SHLPHHMFQHLNSNFVVLD-NHYTDSSLHDLIRTTRLHTLYCHX-SHLTXPLSTHI---- 379
+H+ H H++++ L H T + L I + + H +H+ +HI
Sbjct: 50 THIHTHPHTHISTHTHPLTVTHITHTHLLTHIHSHSFTHAHMHSHTHIHSHTHSHIHSNT 109
Query: 380 -SHNXQYTTDHRHNAVTQYTIICTYQFLSHTYXH---HLSPHMRYTHL-----SAXHLTP 532
+H T+ H + +T T+ HTY H H P + +TH H TP
Sbjct: 110 PTHTHPLTSTHIQTSTVTHTHSHTHAH-KHTYTHTSTHTHP-LTFTHTYPITHPLTH-TP 166
Query: 533 YSXHYFSCPTQHXHINX-LHXASTVLTHLYRTSTYT 637
H + H HI+ +H + LTH TST+T
Sbjct: 167 THTHTHALTHSHTHIHTHMHSHTHPLTH---TSTHT 199
>dbj|BAC04859.1| unnamed protein product [Homo sapiens]
Length = 268
Score = 38.9 bits (89), Expect = 0.33
Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 7/137 (5%)
Frame = +2
Query: 233 HMFQHLNSNFVVLDNHYTDSSLHDLIRTTRLHTLYCHXSHLTXPLSTHISHNXQY----T 400
HM +HL ++ + + ++ T HT C H+ L TH+ + QY T
Sbjct: 129 HMHRHLCTHMQMHPQYPICATHRHTYMETDAHTGLCTHVHMHRHLCTHMQMHPQYPICAT 188
Query: 401 TDHRHNAVTQYTIICTYQFLSHTYXHHLSPHMRYTHLSAXHLTPY---SXHYFSCPTQHX 571
H + +T +CT+ + H+ H +Y + A H Y H C H
Sbjct: 189 HRHTYMETDAHTGLCTHVHMHRHLCTHMQMHPQY-RICATHRHTYMETDVHTGLCAHVHM 247
Query: 572 HINXLHXASTVLTHLYR 622
H + + TH YR
Sbjct: 248 HRH-------LCTHTYR 257
Score = 34.3 bits (77), Expect = 8.2
Identities = 25/93 (26%), Positives = 36/93 (37%), Gaps = 7/93 (7%)
Frame = +2
Query: 317 TRLHTLYCHXSHLTXPLSTHISHNXQY----TTDHRHNAVTQYTIICTYQFLSHTYXHHL 484
T HT C H+ L TH+ + QY T H + +T +CT+ + H+
Sbjct: 79 TDAHTGLCTHVHMHRHLCTHMQMHPQYPICATHRHTYMETDAHTGLCTHVHMHRHLCTHM 138
Query: 485 SPHMRYTHLSAXHLTPY---SXHYFSCPTQHXH 574
H +Y + A H Y H C H H
Sbjct: 139 QMHPQYP-ICATHRHTYMETDAHTGLCTHVHMH 170
>dbj|BAC85667.1| unnamed protein product [Homo sapiens]
Length = 207
Score = 38.1 bits (87), Expect = 0.57
Identities = 48/174 (27%), Positives = 65/174 (36%), Gaps = 12/174 (6%)
Frame = +2
Query: 407 HRHNAVTQYTIICTY----QFL-----SHTYXHHLSPHMRYTHLSAXHLTPYSXHYFSCP 559
H H +T+ C Q+L +HT+ H P YTH H S H +
Sbjct: 6 HAHTHTHAHTLSCKVEIWGQYLPTHTHTHTHTHAHCPVPPYTH---AHAVCTSLHTHT-- 60
Query: 560 TQHXHINXLHXASTVLTHLY-RTSTYTVA-LRSTLITYAHILYAITXYSIHTSTEHN*LI 733
H H L+ ++ H + T T+T A L T+ H + + IHT T +
Sbjct: 61 --HTHTLSLYWLISLYIHTHTHTHTHTHAVLYLPTHTHTHAVLTLAYLPIHTHTHTHTHT 118
Query: 734 LDIFSLYLFYVQHIFTHILRHHIXFXSITLRIYXHX-PHXICILNTXTIQESLH 892
L SLY TH L H +Y H H + L T T SLH
Sbjct: 119 LSCTSLY--------THTLSLH-----WLTCLYTHTHAHAVLYLPTHTHMLSLH 159
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 131
effective length of database: 381,428,880
effective search space used: 152190123120
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)