BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BE039559.f
         (1593 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAC87289.1|  unnamed protein product [Homo sapiens]            48   7e-04
ref|NP_297916.1|  hypothetical protein XF0626 [Xylella fasti...    46   0.002
pir||S54157  extensin-like protein - cowpea (fragment)             44   0.008
dbj|BAC87052.1|  unnamed protein product [Homo sapiens]            44   0.008
emb|CAF90478.1|  unnamed protein product [Tetraodon nigrovir...    44   0.010
dbj|BAC05058.1|  unnamed protein product [Homo sapiens]            43   0.018
pir||I46884  T-cell receptor beta chain - rabbit (fragment)|...    40   0.11 
dbj|BAC04906.1|  unnamed protein product [Homo sapiens]            40   0.19 
dbj|BAC04859.1|  unnamed protein product [Homo sapiens]            39   0.33 
dbj|BAC85667.1|  unnamed protein product [Homo sapiens]            38   0.57 
>dbj|BAC87289.1| unnamed protein product [Homo sapiens]
          Length = 377

 Score = 47.8 bits (112), Expect = 7e-04
 Identities = 69/282 (24%), Positives = 97/282 (33%), Gaps = 63/282 (22%)
 Frame = +2

Query: 59  TXPTSSHTHVCVITLPDSTWTSV*SSAIYAXXXXXXXXXXLTPRXSXPTFTLDSHLPHHM 238
           T  TSSH+H C  T    T     +   +            T   S  TFT  SH P H 
Sbjct: 83  TQCTSSHSHTCSHT-HSLTCPHTLAPTRHTHSHACTHPHVQTHTASAYTFTTHSHTPGHT 141

Query: 239 F--QHLNSNFVVLDNHYTDSSLHDLIRTTRLHTL---YC-----HXSHL------TXPLS 370
               HL        +H  ++  H     T  HTL   YC     H  HL        P  
Sbjct: 142 HSCSHLIHTHSHAHSHPPNAPTH-----THAHTLRPTYCPHTRSHPMHLLTLIRPLTPAH 196

Query: 371 THI---SH-------NXQYTTDHRHNAVTQYTIICT-------YQFLSHT---------- 469
           TH+   SH       +  +T  H H  +   T  CT       Y    HT          
Sbjct: 197 THLTPGSHTHVHTPAHTPHTRSHNHTCLYLLTHACTNTPAYTSYTAHPHTLHCSPSHTHA 256

Query: 470 --YXHHLSPHMRYTHLSA------------------XHLTPYSXHYFSCPTQHXHINXLH 589
             + H L+PH   TH+ +                   H++ YS  +    +   HI  LH
Sbjct: 257 PAHTHMLTPHHSLTHIHSHMIAPTHTSHTLARTHLLTHISRYSAPHAHTCSHTSHITQLH 316

Query: 590 XASTVLTHLYRTSTYTVALRSTLITYAHILYAITXYSIHTST 715
             +   +H    + +T+  R+  +T+AH+  + T   IHT T
Sbjct: 317 --TRPCSHTCAHTPHTIHSRTHPLTHAHVC-SHTCSPIHTHT 355
>ref|NP_297916.1| hypothetical protein XF0626 [Xylella fastidiosa
           9a5c]|gi|11361512|pir||H82781 hypothetical protein
           XF0626 [imported] - Xylella fastidiosa  (strain
           9a5c)|gi|9105500|gb|AAF83436.1| hypothetical protein
           XF0626 [Xylella fastidiosa 9a5c]
          Length = 203

 Score = 46.2 bits (108), Expect = 0.002
 Identities = 34/122 (27%), Positives = 52/122 (41%)
 Frame = +2

Query: 179 LTPRXSXPTFTLDSHLPHHMFQHLNSNFVVLDNHYTDSSLHDLIRTTRLHTLYCHXSHLT 358
           LTP  S  T    SHL  H   HL  +   L  H +  + H    T     L  H SHLT
Sbjct: 68  LTPHTSHLT-PHTSHLTPHT-SHLTPHTSHLTPHTSHLTPHTSHLTPHTSHLTPHTSHLT 125

Query: 359 XPLSTHISHNXQYTTDHRHNAVTQYTIICTYQFLSHTYXHHLSPHMRYTHLSAXHLTPYS 538
            P ++H++ +  + T H  +     + +  +      +  HL+PH  +      HLTP++
Sbjct: 126 -PHTSHLTPHTSHLTPHTSHLTPHTSHLTPHTLHLTPHTSHLTPHTSHLTPHTSHLTPHT 184

Query: 539 XH 544
            H
Sbjct: 185 SH 186

 Score = 45.8 bits (107), Expect = 0.003
 Identities = 52/186 (27%), Positives = 69/186 (36%), Gaps = 5/186 (2%)
 Frame = +2

Query: 2   VIQTRHVXXXPTTXEXXPXTXPTSSHT-----HVCVITLPDSTWTSV*SSAIYAXXXXXX 166
           V  T H+   P T    P T   + HT     H   +T   S  T   S           
Sbjct: 27  VTHTSHLI--PHTSYLIPHTSHLTPHTSHLTPHTSHLTPHTSHLTPHTSHLTPHTSHLTP 84

Query: 167 XXXXLTPRXSXPTFTLDSHLPHHMFQHLNSNFVVLDNHYTDSSLHDLIRTTRLHTLYCHX 346
               LTP  S  T    SHL  H   HL  +   L  H +  + H    T     L  H 
Sbjct: 85  HTSHLTPHTSHLT-PHTSHLTPHT-SHLTPHTSHLTPHTSHLTPHTSHLTPHTSHLTPHT 142

Query: 347 SHLTXPLSTHISHNXQYTTDHRHNAVTQYTIICTYQFLSHTYXHHLSPHMRYTHLSAXHL 526
           SHLT P ++H++ +  + T H     T +    T     HT   HL+PH  +      HL
Sbjct: 143 SHLT-PHTSHLTPHTLHLTPH-----TSHLTPHTSHLTPHT--SHLTPHTSHLTPHTSHL 194

Query: 527 TPYSXH 544
           TP++ H
Sbjct: 195 TPHTSH 200
>pir||S54157 extensin-like protein - cowpea (fragment)
          Length = 279

 Score = 44.3 bits (103), Expect = 0.008
 Identities = 50/223 (22%), Positives = 84/223 (37%)
 Frame = +2

Query: 200 PTFTLDSHLPHHMFQHLNSNFVVLDNHYTDSSLHDLIRTTRLHTLYCHXSHLTXPLSTHI 379
           P FT   HL H +  HL    + +  H+       L+  T  H L+    HL   +S H 
Sbjct: 73  PMFT-SLHLLHLLPHHLP---MCISPHHHHLLHRHLLMFTSHHLLHLLPHHLHMCISRHH 128

Query: 380 SHNXQYTTDHRHNAVTQYTIICTYQFLSHTYXHHLSPHMRYTHLSAXHLTPYSXHYFSCP 559
            H    T+ H H+ +  +  + T   L H   HHL  HM  +H                 
Sbjct: 129 HHLPMSTSPHHHHLLHHHLPMSTSHPLLHLLLHHL--HMCISH----------------- 169

Query: 560 TQHXHINXLHXASTVLTHLYRTSTYTVALRSTLITYAHILYAITXYSIHTSTEHN*LILD 739
             H H+  L   +    HL     + + + ++L    H+L+ +  +     + H+  +L 
Sbjct: 170 -HHHHLLHLRLPTFTSPHLLHLLPHHLPMFTSL----HLLHLLPHHLPMCISPHHHHLL- 223

Query: 740 IFSLYLFYVQHIFTHILRHHIXFXSITLRIYXHXPHXICILNT 868
                L +  H   H+L HH+       R + H  H   +++T
Sbjct: 224 -HHHLLMFTSHHLLHLLPHHLHM--CISRHHHHLLHHHLLMST 263

 Score = 34.3 bits (77), Expect = 8.2
 Identities = 47/215 (21%), Positives = 81/215 (36%), Gaps = 29/215 (13%)
 Frame = +2

Query: 374 HISHNXQYT--TDHRHNAVTQYTIICTYQFLSHTYXHHLSPHM----RYTHLSAXHLTPY 535
           H+ H+  +   + HRH+ +  + ++ T   L H   HHL  HM     + HL   HL  +
Sbjct: 2   HLLHHHLHMCISHHRHHLLHHHLLMFTSHHLLHLLPHHL--HMCISRHHHHLLHHHLLMF 59

Query: 536 SXHYFSCPTQH-----XHINXLHXASTVLTHLYRTSTYTVALRSTLITYAHILYAITXYS 700
           + H+      H       ++ LH     L        + +  R  L+  +H L  +  + 
Sbjct: 60  TSHHLLHLLPHHLPMFTSLHLLHLLPHHLPMCISPHHHHLLHRHLLMFTSHHLLHLLPHH 119

Query: 701 IH-------------TSTEHN*LILDIFSLYLFYVQHIFTHILRHHIXFXSITLRIYXHX 841
           +H             TS  H+ L+     +      H   H+L HH+      + I  H 
Sbjct: 120 LHMCISRHHHHLPMSTSPHHHHLLHHHLPM---STSHPLLHLLLHHLH-----MCISHHH 171

Query: 842 PHXICI-LNTXTIQESL----HXRQVVSYLHISHI 931
            H + + L T T    L    H   + + LH+ H+
Sbjct: 172 HHLLHLRLPTFTSPHLLHLLPHHLPMFTSLHLLHL 206
>dbj|BAC87052.1| unnamed protein product [Homo sapiens]
          Length = 415

 Score = 44.3 bits (103), Expect = 0.008
 Identities = 51/219 (23%), Positives = 87/219 (39%), Gaps = 17/219 (7%)
 Frame = +2

Query: 233 HMFQHLNSNFVVLDNHYTDSSLHDLIRTTRLHTLYCHXSHLTXPLSTHISHNXQYTTDHR 412
           H   H++ +  +  N +T +  H    T   +T+ C  +H+      H +H   +     
Sbjct: 112 HTHAHIHIHVHIHMNIHTHTCTHIYTCT---YTVVCTHTHMHIYTHMH-THTCIHIHSDT 167

Query: 413 HNAVTQYTIICTYQFL---SHTYXH-HLSPHMR-YTHLSAXHLTPYSXHYFSCPTQHXHI 577
           H  +  +T+ CT   +   +HT+ H H+  H R YTH+    LT    H ++    H H 
Sbjct: 168 HLHIYTHTLTCTQTQIHTCTHTHIHIHMPTHTRTYTHMHTHTLTCTQIHIYTHIYMHAH- 226

Query: 578 NXLHXASTVLTHLYRTSTYTVA-------LRSTLITYAHILYAITXY---SIHTSTE-HN 724
             +H      TH +   TYT A       +   + TY H+   +  Y    IHT T  H+
Sbjct: 227 TPIHSHIHTWTHTH-AHTYTHAHIHVCTHIHMHIHTYTHMHTHMDTYPHTHIHTCTHMHS 285

Query: 725 *LILDIFS-LYLFYVQHIFTHILRHHIXFXSITLRIYXH 838
              ++  +  ++    H  TH   +      I +  Y H
Sbjct: 286 HAHINTHTHAHIHMHMHTHTHTHTYTHAHAHIHINTYMH 324
>emb|CAF90478.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1216

 Score = 43.9 bits (102), Expect = 0.010
 Identities = 34/130 (26%), Positives = 52/130 (39%), Gaps = 3/130 (2%)
 Frame = +2

Query: 341  HXSHLTXPLSTHISHNXQYTTDHRHNAVTQYTIICTYQFLSHTYXHHLSPHMRYTHLSAX 520
            H + +     TH +H   Y   H H  +         ++  HT   H+    RYTH +  
Sbjct: 800  HHTRIEHFRGTHTTHTEHYRGTHTHTHIG-----ALQRYTHHT---HIGALQRYTHHTHG 851

Query: 521  HLTPYSXHYFSCPTQHXHINXL-HXASTVLTHLYRTS-TYTVALRSTLITYA-HILYAIT 691
             L  Y+ H      ++ H   + H   T  TH + T+  +T   RST   +  H   A+ 
Sbjct: 852  ALQRYTHHTHGALQRYTHHTRMEHYRGTHTTHAWSTTEVHTPHTRSTTEVHTPHTHGALQ 911

Query: 692  XYSIHTSTEH 721
             Y+ HT  EH
Sbjct: 912  RYTHHTRMEH 921
>dbj|BAC05058.1| unnamed protein product [Homo sapiens]
          Length = 225

 Score = 43.1 bits (100), Expect = 0.018
 Identities = 42/171 (24%), Positives = 64/171 (36%), Gaps = 14/171 (8%)
 Frame = +2

Query: 329 TLYCHXSHLTXPLSTHISHNXQYTTDHRHNAVTQYTIICTYQFLSHTYXHHLSP---HMR 499
           T + H  H     +TH  H+  +T    H   T  T I +Y+  +HT    L+    H  
Sbjct: 18  TYHSHNPHSPTIHNTHTHHSHTHTIWTHHTHTTHTTHINSYKAFTHTTHTPLTSTHLHTP 77

Query: 500 YTHLSAXHLTPYSXHYFSCPTQHX---HINXLHXASTVLTHLYRTSTYTVALRSTLITYA 670
            TH    H+T +S       TQH    H +  H  +    H     T   ++ +  I + 
Sbjct: 78  LTHTPRTHITHHS------QTQHTLLIHQSYTHTPTHHTQHKPHMHTPFTSINTPCIHHT 131

Query: 671 HI-LYAIT-------XYSIHTSTEHN*LILDIFSLYLFYVQHIFTHILRHH 799
           H  L  I+        Y+ HT  +H       +  +L +  H  TH  R H
Sbjct: 132 HAPLTEISPHKPLKPTYTPHTHHKHTSHYSYTYHRHLSHTTHTHTHTPRTH 182

 Score = 35.8 bits (81), Expect = 2.8
 Identities = 28/108 (25%), Positives = 44/108 (39%), Gaps = 7/108 (6%)
 Frame = +2

Query: 203 TFTLDSHLPHH-MFQH---LNSNFVVLDNHYTDSSLHDLIRTTRLHTLYCHXSHLT-XPL 367
           T T  +H+ HH   QH   ++ ++     H+T    H     T ++T   H +H     +
Sbjct: 79  THTPRTHITHHSQTQHTLLIHQSYTHTPTHHTQHKPHMHTPFTSINTPCIHHTHAPLTEI 138

Query: 368 STHISHNXQYT--TDHRHNAVTQYTIICTYQFLSHTYXHHLSPHMRYT 505
           S H      YT  T H+H +   YT        +HT+ H    H  +T
Sbjct: 139 SPHKPLKPTYTPHTHHKHTSHYSYTYHRHLSHTTHTHTHTPRTHKPHT 186

 Score = 34.3 bits (77), Expect = 8.2
 Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 14/139 (10%)
 Frame = +2

Query: 464 HTYXHHLSPHMRYTHLSAXHLTPYSXHYFSCPTQHXHINXL---HXASTVLTHL--YRTS 628
           HT   H +  +   H++     P+S    +  T H H + +   H  +T  TH+  Y+  
Sbjct: 2   HTIHTHTTHTIHTQHITYHSHNPHSPTIHNTHTHHSHTHTIWTHHTHTTHTTHINSYKAF 61

Query: 629 TYTVALRSTLITYAHILYAI-----TXYSIHTSTEHN*LILDIFSLYLFYVQHIFTHILR 793
           T+T     T +T  H+   +     T  + H+ T+H  LI   ++       H  TH  +
Sbjct: 62  THTT---HTPLTSTHLHTPLTHTPRTHITHHSQTQHTLLIHQSYT-------HTPTHHTQ 111

Query: 794 H----HIXFXSITLRIYXH 838
           H    H  F SI      H
Sbjct: 112 HKPHMHTPFTSINTPCIHH 130
>pir||I46884 T-cell receptor beta chain - rabbit
           (fragment)|gi|488328|gb|AAA82093.1| unknown protein
          Length = 269

 Score = 40.4 bits (93), Expect = 0.11
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 8/104 (7%)
 Frame = +2

Query: 293 SLHDLIRTTRLHT-----LYCHXSHLTXPLSTHISHNXQYTTDHRHNAVTQYTIICTYQF 457
           +L  + RTT +HT      Y H   LT   ++   +   +   H H     +T +C Y  
Sbjct: 15  TLTHITRTTHMHTRVHPHTYAHTHELTLTCASTYLNIRAHVHTHMHTCTHMHTQMCAYSH 74

Query: 458 LS---HTYXHHLSPHMRYTHLSAXHLTPYSXHYFSCPTQHXHIN 580
                HT     +P   Y H  A  LT  + H       H H++
Sbjct: 75  TREYMHTLTQTCAPTHAYAHTYAHTLTHANSHVHLHGHMHTHVH 118
>dbj|BAC04906.1| unnamed protein product [Homo sapiens]
          Length = 226

 Score = 39.7 bits (91), Expect = 0.19
 Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 9/163 (5%)
 Frame = +2

Query: 335 YCHXSHLTXPLS-THISHNXQYTTDHRHNAVTQYTIICTYQFLSHTYXHHLS-PHMR-YT 505
           + H    T PL+ THI H   +T    H      T I     L+H + H  +  HM  +T
Sbjct: 37  HSHPLSHTYPLTLTHI-HTHPHTHISTHTHPLTVTHITHTHLLTHIHSHSFTHAHMHSHT 95

Query: 506 HLSAXHLTPYSXHYFSCPTQHXHINXLHXASTVLTHLY-----RTSTYT-VALRSTLITY 667
           H+   H   +S  + + PT    +   H  ++ +TH +        TYT  +  +  +T+
Sbjct: 96  HI---HSHTHSHIHSNTPTHTHPLTSTHIQTSTVTHTHSHTHAHKHTYTHTSTHTHPLTF 152

Query: 668 AHILYAITXYSIHTSTEHN*LILDIFSLYLFYVQHIFTHILRH 796
            H  Y IT    HT T  +   L     ++    H  TH L H
Sbjct: 153 TH-TYPITHPLTHTPTHTHTHALTHSHTHIHTHMHSHTHPLTH 194

 Score = 34.7 bits (78), Expect = 6.3
 Identities = 40/156 (25%), Positives = 64/156 (40%), Gaps = 16/156 (10%)
 Frame = +2

Query: 218 SHLPHHMFQHLNSNFVVLD-NHYTDSSLHDLIRTTRLHTLYCHX-SHLTXPLSTHI---- 379
           +H+  H   H++++   L   H T + L   I +      + H  +H+     +HI    
Sbjct: 50  THIHTHPHTHISTHTHPLTVTHITHTHLLTHIHSHSFTHAHMHSHTHIHSHTHSHIHSNT 109

Query: 380 -SHNXQYTTDHRHNAVTQYTIICTYQFLSHTYXH---HLSPHMRYTHL-----SAXHLTP 532
            +H    T+ H   +   +T   T+    HTY H   H  P + +TH         H TP
Sbjct: 110 PTHTHPLTSTHIQTSTVTHTHSHTHAH-KHTYTHTSTHTHP-LTFTHTYPITHPLTH-TP 166

Query: 533 YSXHYFSCPTQHXHINX-LHXASTVLTHLYRTSTYT 637
              H  +    H HI+  +H  +  LTH   TST+T
Sbjct: 167 THTHTHALTHSHTHIHTHMHSHTHPLTH---TSTHT 199
>dbj|BAC04859.1| unnamed protein product [Homo sapiens]
          Length = 268

 Score = 38.9 bits (89), Expect = 0.33
 Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 7/137 (5%)
 Frame = +2

Query: 233 HMFQHLNSNFVVLDNHYTDSSLHDLIRTTRLHTLYCHXSHLTXPLSTHISHNXQY----T 400
           HM +HL ++  +   +   ++       T  HT  C   H+   L TH+  + QY    T
Sbjct: 129 HMHRHLCTHMQMHPQYPICATHRHTYMETDAHTGLCTHVHMHRHLCTHMQMHPQYPICAT 188

Query: 401 TDHRHNAVTQYTIICTYQFLSHTYXHHLSPHMRYTHLSAXHLTPY---SXHYFSCPTQHX 571
             H +     +T +CT+  +      H+  H +Y  + A H   Y     H   C   H 
Sbjct: 189 HRHTYMETDAHTGLCTHVHMHRHLCTHMQMHPQY-RICATHRHTYMETDVHTGLCAHVHM 247

Query: 572 HINXLHXASTVLTHLYR 622
           H +       + TH YR
Sbjct: 248 HRH-------LCTHTYR 257

 Score = 34.3 bits (77), Expect = 8.2
 Identities = 25/93 (26%), Positives = 36/93 (37%), Gaps = 7/93 (7%)
 Frame = +2

Query: 317 TRLHTLYCHXSHLTXPLSTHISHNXQY----TTDHRHNAVTQYTIICTYQFLSHTYXHHL 484
           T  HT  C   H+   L TH+  + QY    T  H +     +T +CT+  +      H+
Sbjct: 79  TDAHTGLCTHVHMHRHLCTHMQMHPQYPICATHRHTYMETDAHTGLCTHVHMHRHLCTHM 138

Query: 485 SPHMRYTHLSAXHLTPY---SXHYFSCPTQHXH 574
             H +Y  + A H   Y     H   C   H H
Sbjct: 139 QMHPQYP-ICATHRHTYMETDAHTGLCTHVHMH 170
>dbj|BAC85667.1| unnamed protein product [Homo sapiens]
          Length = 207

 Score = 38.1 bits (87), Expect = 0.57
 Identities = 48/174 (27%), Positives = 65/174 (36%), Gaps = 12/174 (6%)
 Frame = +2

Query: 407 HRHNAVTQYTIICTY----QFL-----SHTYXHHLSPHMRYTHLSAXHLTPYSXHYFSCP 559
           H H     +T+ C      Q+L     +HT+ H   P   YTH    H    S H  +  
Sbjct: 6   HAHTHTHAHTLSCKVEIWGQYLPTHTHTHTHTHAHCPVPPYTH---AHAVCTSLHTHT-- 60

Query: 560 TQHXHINXLHXASTVLTHLY-RTSTYTVA-LRSTLITYAHILYAITXYSIHTSTEHN*LI 733
             H H   L+   ++  H +  T T+T A L     T+ H +  +    IHT T  +   
Sbjct: 61  --HTHTLSLYWLISLYIHTHTHTHTHTHAVLYLPTHTHTHAVLTLAYLPIHTHTHTHTHT 118

Query: 734 LDIFSLYLFYVQHIFTHILRHHIXFXSITLRIYXHX-PHXICILNTXTIQESLH 892
           L   SLY        TH L  H         +Y H   H +  L T T   SLH
Sbjct: 119 LSCTSLY--------THTLSLH-----WLTCLYTHTHAHAVLYLPTHTHMLSLH 159
  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 131
effective length of database: 381,428,880
effective search space used: 152190123120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results