BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BE039551.f
(1462 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC04906.1| unnamed protein product [Homo sapiens] 46 0.002
dbj|BAC39276.1| unnamed protein product [Mus musculus] 44 0.012
dbj|BAC87264.1| unnamed protein product [Homo sapiens] 42 0.035
dbj|BAC87052.1| unnamed protein product [Homo sapiens] 42 0.035
dbj|BAC85667.1| unnamed protein product [Homo sapiens] 42 0.046
ref|NP_297344.1| hypothetical protein XF0051 [Xylella fasti... 40 0.13
gb|AAB40929.1| LimA [Dictyostelium discoideum] 40 0.13
dbj|BAC87289.1| unnamed protein product [Homo sapiens] 39 0.39
dbj|BAC86735.1| unnamed protein product [Homo sapiens] 38 0.51
emb|CAE66547.1| Hypothetical protein CBG11855 [Caenorhabdit... 38 0.51
>dbj|BAC04906.1| unnamed protein product [Homo sapiens]
Length = 226
Score = 46.2 bits (108), Expect = 0.002
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 8/106 (7%)
Frame = +3
Query: 1149 VSHIFLTINLRQTHLQSPFYYNSSPLSHSHTHYHTH-RIYLSS*AH----TSSHIRHTHI 1313
V+HI T L TH+ S + ++ SH+H H HTH I+ ++ H TS+HI+ + +
Sbjct: 69 VTHITHTHLL--THIHSHSFTHAHMHSHTHIHSHTHSHIHSNTPTHTHPLTSTHIQTSTV 126
Query: 1314 YLTHSLSKPNKAYTYSHNRSMTYNLLYSFLFCTN---LYQPLH*HT 1442
THS + +K +TY+H + T+ L ++ + + P H HT
Sbjct: 127 THTHSHTHAHK-HTYTHTSTHTHPLTFTHTYPITHPLTHTPTHTHT 171
Score = 41.2 bits (95), Expect = 0.060
Identities = 34/119 (28%), Positives = 56/119 (46%), Gaps = 12/119 (10%)
Frame = +2
Query: 287 LSQFPPLTH*YIHKYTPTL---HILSLIFIYIY*QTSHHIYILTHYHVSTCSYSLLLFYL 457
LS PLT +IH +T L H LS + Y T HI+ H H+ST ++ L + ++
Sbjct: 17 LSHTHPLTLTHIHSHTHPLTHSHPLS----HTYPLTLTHIHTHPHTHISTHTHPLTVTHI 72
Query: 458 TH---------HHFSDSRIHVSSPLFSTRHHIIDXYSPXYSTSDXSHCILNYSLSPTNS 607
TH H F+ + +H + + S H I +P ++ S I +++ T+S
Sbjct: 73 THTHLLTHIHSHSFTHAHMHSHTHIHSHTHSHIHSNTPTHTHPLTSTHIQTSTVTHTHS 131
Score = 38.9 bits (89), Expect = 0.30
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 12/81 (14%)
Frame = +3
Query: 1176 LRQTHLQSPFY--YNSSPLSHS--------HTHYHTHRIYLSS*AH--TSSHIRHTHIYL 1319
L TH+ S + +S PLSH+ HTH HTH +S+ H T +HI HTH+ L
Sbjct: 23 LTLTHIHSHTHPLTHSHPLSHTYPLTLTHIHTHPHTH---ISTHTHPLTVTHITHTHL-L 78
Query: 1320 THSLSKPNKAYTYSHNRSMTY 1382
TH S ++T++H S T+
Sbjct: 79 THIHS---HSFTHAHMHSHTH 96
Score = 37.7 bits (86), Expect = 0.66
Identities = 29/104 (27%), Positives = 42/104 (39%), Gaps = 3/104 (2%)
Frame = +3
Query: 1029 SHPTXXYHNTINDD*NIHPPIDXXXXXXXXXXXHTPYSRYVSHIFLTINLRQTHLQSPFY 1208
+HP H + + H HT + +T L T P +
Sbjct: 113 THPLTSTHIQTSTVTHTHSHTHAHKHTYTHTSTHTHPLTFTHTYPITHPLTHT----PTH 168
Query: 1209 YNSSPLSHSHTHYHTH-RIYLSS*AHTSSHIR-HTH-IYLTHSL 1331
++ L+HSHTH HTH + HTS+H HTH ++LT L
Sbjct: 169 THTHALTHSHTHIHTHMHSHTHPLTHTSTHTHPHTHNVWLTQDL 212
>dbj|BAC39276.1| unnamed protein product [Mus musculus]
Length = 158
Score = 43.5 bits (101), Expect = 0.012
Identities = 24/77 (31%), Positives = 42/77 (54%)
Frame = +3
Query: 1212 NSSPLSHSHTHYHTHRIYLSS*AHTSSHIRHTHIYLTHSLSKPNKAYTYSHNRSMTYNLL 1391
N+ +++H H HTH + AHT +H HTHI+ TH+ YT++H + + +
Sbjct: 20 NTHTHTYTHMHTHTHIHMHTECAHTHAHTMHTHIH-THA-----HIYTHAHIHTHVHTIA 73
Query: 1392 YSFLFCTNLYQPLH*HT 1442
+++ T+ Y +H HT
Sbjct: 74 HTYT-NTHTYTHIHMHT 89
>dbj|BAC87264.1| unnamed protein product [Homo sapiens]
Length = 225
Score = 42.0 bits (97), Expect = 0.035
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Frame = +3
Query: 1128 HTPYSRYVSHIFLTINLRQTHLQSPFYYNSSPLSHSHTHYHTHRIYLSS*AHTSSH---- 1295
HTP+++ + I LT++ TH + H+HTH HTH S+ AHT +H
Sbjct: 99 HTPHTQMHTRI-LTLSHMHTHAHT----------HAHTHGHTHTRAHSTHAHTHAHSHYH 147
Query: 1296 -----IRHTHIYLTHSLSKPNKAYTYSHNRSMTYNLLYSFLFCTNLYQPLH*HTLLS 1451
+ H+H + S +T++H T+ S L T H HT LS
Sbjct: 148 TRTLTLTHSHAHSCTLTSTITHMHTHTHTHMHTHT---STLTRTLTLTHTHMHTFLS 201
>dbj|BAC87052.1| unnamed protein product [Homo sapiens]
Length = 415
Score = 42.0 bits (97), Expect = 0.035
Identities = 26/85 (30%), Positives = 44/85 (51%)
Frame = +3
Query: 1185 THLQSPFYYNSSPLSHSHTHYHTHRIYLSS*AHTSSHIRHTHIYLTHSLSKPNKAYTYSH 1364
TH+ S + N+ +H H H HTH + HT +H H HI++ + YTY+H
Sbjct: 281 THMHSHAHINTHTHAHIHMHMHTH-----THTHTYTH-AHAHIHINTYM----HTYTYTH 330
Query: 1365 NRSMTYNLLYSFLFCTNLYQPLH*H 1439
R+ T+ +++ L T+++ H H
Sbjct: 331 IRTYTHIQMHT-LTWTHIHTHTHIH 354
Score = 38.9 bits (89), Expect = 0.30
Identities = 25/91 (27%), Positives = 46/91 (50%)
Frame = +3
Query: 1176 LRQTHLQSPFYYNSSPLSHSHTHYHTHRIYLSS*AHTSSHIRHTHIYLTHSLSKPNKAYT 1355
L TH+ + Y + H HTH HT+ + AHT +HI H H+++ ++ +T
Sbjct: 82 LTYTHIHTCTYKRTYIQGHIHTHMHTY-----THAHTHAHI-HIHVHIHMNI----HTHT 131
Query: 1356 YSHNRSMTYNLLYSFLFCTNLYQPLH*HTLL 1448
+H + TY ++ + ++Y +H HT +
Sbjct: 132 CTHIYTCTYTVVCTHTH-MHIYTHMHTHTCI 161
Score = 38.9 bits (89), Expect = 0.30
Identities = 25/109 (22%), Positives = 51/109 (45%), Gaps = 20/109 (18%)
Frame = +3
Query: 1167 TINLRQTHLQSPFYYNSSPLSHSHTHYHTH---RIYLSS*AHTSSHI---------RHTH 1310
T ++T++Q + + +H+HTH H H I+++ HT +HI HTH
Sbjct: 89 TCTYKRTYIQGHIHTHMHTYTHAHTHAHIHIHVHIHMNIHTHTCTHIYTCTYTVVCTHTH 148
Query: 1311 IYL-----THS---LSKPNKAYTYSHNRSMTYNLLYSFLFCTNLYQPLH 1433
+++ TH+ + + Y+H + T +++ CT+ + +H
Sbjct: 149 MHIYTHMHTHTCIHIHSDTHLHIYTHTLTCTQTQIHT---CTHTHIHIH 194
Score = 38.5 bits (88), Expect = 0.39
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Frame = +3
Query: 1128 HTP-YSRYVSHIFL-TINLRQTHLQSPFYYNSSPLSHSHTHYHTHRIYLSS*AHTSSHIR 1301
H P ++R +H+ T+ Q H+ + Y ++ HSH H TH + AHT +
Sbjct: 194 HMPTHTRTYTHMHTHTLTCTQIHIYTHIYMHAHTPIHSHIHTWTH-----THAHTYT--- 245
Query: 1302 HTHIYLTHSLSKPNKAYTYSHNRSMTYNLLYSFLFCTNLYQPLH*HT 1442
H HI++ + YT+ H TY + CT+++ H +T
Sbjct: 246 HAHIHVCTHIHMHIHTYTHMHTHMDTYPHTHIHT-CTHMHSHAHINT 291
Score = 34.3 bits (77), Expect = 7.3
Identities = 22/87 (25%), Positives = 42/87 (47%), Gaps = 3/87 (3%)
Frame = +2
Query: 242 IHQLSHHSYISNIP*LSQFPPLTH*YIHKYTPT-LHILSLIFIYIY*QTSHHIYILT--H 412
IH +H ++ P S TH + H YT +H+ + I ++I+ T H ++ T H
Sbjct: 215 IHIYTHIYMHAHTPIHSHIHTWTHTHAHTYTHAHIHVCTHIHMHIHTYTHMHTHMDTYPH 274
Query: 413 YHVSTCSYSLLLFYLTHHHFSDSRIHV 493
H+ TC++ ++ H + +H+
Sbjct: 275 THIHTCTHMHSHAHINTHTHAHIHMHM 301
Score = 32.3 bits (72), Expect(2) = 1.4
Identities = 21/81 (25%), Positives = 37/81 (44%), Gaps = 7/81 (8%)
Frame = +2
Query: 317 YIHKYTPT-------LHILSLIFIYIY*QTSHHIYILTHYHVSTCSYSLLLFYLTHHHFS 475
Y+H YT T + + +L + +I+ T HIY+ TH H+ T ++ Y H ++
Sbjct: 322 YMHTYTYTHIRTYTHIQMHTLTWTHIHTHTHIHIYVYTHTHMHTPTH----IYAHRHTYT 377
Query: 476 DSRIHVSSPLFSTRHHIIDXY 538
+ H + + H I Y
Sbjct: 378 YAHSHTYIHMHTHIHTHIHTY 398
Score = 23.1 bits (48), Expect(2) = 1.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 183 HLHYDVPL*IPLNI*THTYSYTNYHITLISQIFHNY 290
H H + + + + THTY++ + HI I+ H Y
Sbjct: 292 HTHAHIHMHMHTHTHTHTYTHAHAHIH-INTYMHTY 326
>dbj|BAC85667.1| unnamed protein product [Homo sapiens]
Length = 207
Score = 41.6 bits (96), Expect = 0.046
Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Frame = +3
Query: 1128 HTPYSRYV-SHIFLTINLRQTHLQS-PFYYNSSPLSHSHTHYHTHR---IYLSS*AHTSS 1292
H P Y +H T TH + Y+ S H+HTH HTH +YL + HT +
Sbjct: 40 HCPVPPYTHAHAVCTSLHTHTHTHTLSLYWLISLYIHTHTHTHTHTHAVLYLPT--HTHT 97
Query: 1293 HIRHTHIYLTHSLSKPNKAYTYSHNRSMTYNLLY----SFLFCTNLYQPLH*HTLL 1448
H T YL P +T++H +++ LY S + T LY H H +L
Sbjct: 98 HAVLTLAYL------PIHTHTHTHTHTLSCTSLYTHTLSLHWLTCLYTHTHAHAVL 147
Score = 37.7 bits (86), Expect = 0.66
Identities = 23/86 (26%), Positives = 40/86 (45%), Gaps = 12/86 (13%)
Frame = +3
Query: 1227 SHSHTHYHTHRI---------YLSS*AHTSSHIRHTHIYL---THSLSKPNKAYTYSHNR 1370
+H+HTH H H + YL + HT +H H H + TH+ + +T++H
Sbjct: 5 THAHTHTHAHTLSCKVEIWGQYLPTHTHTHTHT-HAHCPVPPYTHAHAVCTSLHTHTHTH 63
Query: 1371 SMTYNLLYSFLFCTNLYQPLH*HTLL 1448
+++ L S T+ + H H +L
Sbjct: 64 TLSLYWLISLYIHTHTHTHTHTHAVL 89
Score = 36.2 bits (82), Expect = 1.9
Identities = 22/80 (27%), Positives = 36/80 (44%), Gaps = 8/80 (10%)
Frame = +3
Query: 1227 SHSHTHYH------THRIYLSS*AHTSSHIRHTHIYLTHSLSKPNKAYTYSHNRSMTY-- 1382
+H+HTH H TH + + HT +H +Y SL +T++H ++ Y
Sbjct: 33 THTHTHAHCPVPPYTHAHAVCTSLHTHTHTHTLSLYWLISLYIHTHTHTHTHTHAVLYLP 92
Query: 1383 NLLYSFLFCTNLYQPLH*HT 1442
++ T Y P+H HT
Sbjct: 93 THTHTHAVLTLAYLPIHTHT 112
>ref|NP_297344.1| hypothetical protein XF0051 [Xylella fastidiosa
9a5c]|gi|11361321|pir||G82853 hypothetical protein XF0051
[imported] - Xylella fastidiosa (strain
9a5c)|gi|9104819|gb|AAF82864.1| hypothetical protein
XF0051 [Xylella fastidiosa 9a5c]
Length = 121
Score = 40.0 bits (92), Expect = 0.13
Identities = 34/107 (31%), Positives = 50/107 (45%), Gaps = 4/107 (3%)
Frame = +3
Query: 1137 YSRYVSHIFL---TINLRQTHLQSPFYYNSSPLSHSHTHYHTHRIYLSS*AHTSSHIRHT 1307
YS +H T L +H + + ++ L+HSHTH TH S HT +H HT
Sbjct: 2 YSDITTHTLTHSHTHTLTHSHTHTLTHSHTHTLTHSHTHTLTH-----SHTHTLTH-SHT 55
Query: 1308 HIYLTHSLSKPNKAYTYSHNRSMTYNLLYSFLFC-TNLYQPLH*HTL 1445
H LTHS T+SH ++T++ ++ T+ H HTL
Sbjct: 56 HT-LTHS---HTHTLTHSHTHTLTHSHTHTLTHSHTHTLTHSHTHTL 98
>gb|AAB40929.1| LimA [Dictyostelium discoideum]
Length = 623
Score = 40.0 bits (92), Expect = 0.13
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +3
Query: 1194 QSPFYYNSSPLSHSHTHY-HTHRIYLSS*AHTSSHIRHTHIYLTHSLSKPNKAYTYSHNR 1370
++ + + +PL HSH H H+H +H+ SH +H H + H S P++++++SH
Sbjct: 128 ENDHHAHPNPLEHSHPHQSHSH-------SHSHSHPQHPHSHPQHPHSHPHQSHSHSHAH 180
Query: 1371 S 1373
S
Sbjct: 181 S 181
>dbj|BAC87289.1| unnamed protein product [Homo sapiens]
Length = 377
Score = 38.5 bits (88), Expect = 0.39
Identities = 26/85 (30%), Positives = 41/85 (47%), Gaps = 1/85 (1%)
Frame = +3
Query: 1128 HTP-YSRYVSHIFLTINLRQTHLQSPFYYNSSPLSHSHTHYHTHRIYLSS*AHTSSHIRH 1304
+TP Y+ Y +H T++ +H +P + + HS TH H+H I + HTS +
Sbjct: 233 NTPAYTSYTAHPH-TLHCSPSHTHAPAHTHMLTPHHSLTHIHSHMI---APTHTSHTLAR 288
Query: 1305 THIYLTHSLSKPNKAYTYSHNRSMT 1379
TH+ S A+T SH +T
Sbjct: 289 THLLTHISRYSAPHAHTCSHTSHIT 313
>dbj|BAC86735.1| unnamed protein product [Homo sapiens]
Length = 175
Score = 38.1 bits (87), Expect = 0.51
Identities = 23/70 (32%), Positives = 31/70 (43%), Gaps = 1/70 (1%)
Frame = +3
Query: 1176 LRQTHLQSPFYYNSSPLSHSHTHYHTHRIYLSS*AHTSSHIR-HTHIYLTHSLSKPNKAY 1352
L TH+ + Y + H HTH HT Y + HT HI H HI+ + AY
Sbjct: 88 LTYTHIHTCTYKRTYIQGHIHTHMHT---YTCTCTHTHKHIHAHIHIHTHTHIYTHTDAY 144
Query: 1353 TYSHNRSMTY 1382
T+ + TY
Sbjct: 145 THMDTYTHTY 154
>emb|CAE66547.1| Hypothetical protein CBG11855 [Caenorhabditis briggsae]
Length = 370
Score = 38.1 bits (87), Expect = 0.51
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +2
Query: 272 SNIP*LSQFPPLTH*YI-HKYTPTLHILSLIFIYIY*QTSHHIYILTHYHVSTCSYSLLL 448
S P S PP H + + P L ++ +Y SH ++LT H + + LL+
Sbjct: 288 SKRPRFSVIPPFGHRCLTRRCEPLKDTLLILQRPLYDSHSHIFFVLTSLHETIIDFPLLV 347
Query: 449 FYLTHHHFSDSRIHVSSPLF 508
H DSR+ V+ PLF
Sbjct: 348 TLFDFHRCPDSRVMVNGPLF 367
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 130
effective length of database: 383,324,178
effective search space used: 136463407368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)