BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BE039143.f
(1633 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAA63244.1| profilaggrin 45 0.005
gb|AAA36487.1| profilaggrin 45 0.005
pir||A35938 profilaggrin - human (fragments) 45 0.005
ref|XP_315753.1| ENSANGP00000018678 [Anopheles gambiae]|gi|... 45 0.006
emb|CAB55969.1| hypothetical protein [Homo sapiens] 41 0.090
emb|CAA30303.1| hU1-70K protein (286 AA) [Homo sapiens] 41 0.090
pir||A25707 U1 snRNP 70K protein - human|gi|36100|emb|CAA28... 41 0.090
ref|NP_003080.2| U1 small nuclear ribonucleoprotein 70 kDa;... 41 0.090
emb|CAA29961.1| unnamed protein product [Homo sapiens] 41 0.090
emb|CAA29963.1| unnamed protein product [Homo sapiens] 41 0.090
>gb|AAA63244.1| profilaggrin
Length = 990
Score = 45.1 bits (105), Expect = 0.005
Identities = 55/251 (21%), Positives = 84/251 (32%), Gaps = 18/251 (7%)
Frame = +2
Query: 377 QDNATDRSGQEKDPPQRTPTRTIGE*TAGRQTGDTXQXKXREQ------RNAAAVERRXX 538
Q + R + + TR +GR Q EQ R+A + RR
Sbjct: 537 QSVSGQRQARSHQQSHQESTRGQSRGRSGRSGSFLYQVSTHEQSESAHGRSAPSTRRRQG 596
Query: 539 THASDARRTXTHVASRA--DTTTGHDXDEHPPHGLDIGQXVRHXXXXXXXXXXQKTTRAX 712
+H AR + H AS+ DT GH P G+ H + +
Sbjct: 597 SHHDQARDSSRHSASQEGQDTIRGH------PGSSRGGRQGSHYEQSVDRSGHSGSHHSH 650
Query: 713 IQTT*RXNAMXXXXXXXXSDTHEIXRRHTRETVTPDSATTHAAQLHGRGATPADTSRXAP 892
+ R +A + R TR+ T H+ H +T AD+SR +
Sbjct: 651 TTSQGRSDASHGTSGSRSAS------RQTRDEEQSGDGTRHSGSHHQEASTQADSSRHSQ 704
Query: 893 RG----------RRHPVATHDGRQSEITSGQYRRNHDETTRDDRGRAKTRAHSTSTHWTA 1042
G R + R SE S R+ +R+ RG A+ ++ S H +
Sbjct: 705 VGQGQSAGSRTSRNQGSSVSQDRDSEGQSEDSERHSGSASRNHRGSAQEQSRDGSRHPGS 764
Query: 1043 RTXHAADERQT 1075
A RQ+
Sbjct: 765 HDEDRAGHRQS 775
>gb|AAA36487.1| profilaggrin
Length = 1218
Score = 45.1 bits (105), Expect = 0.005
Identities = 55/251 (21%), Positives = 84/251 (32%), Gaps = 18/251 (7%)
Frame = +2
Query: 377 QDNATDRSGQEKDPPQRTPTRTIGE*TAGRQTGDTXQXKXREQ------RNAAAVERRXX 538
Q + R + + TR +GR Q EQ R+A + RR
Sbjct: 759 QSVSGQRQARSHQQSHQESTRGQSRGRSGRSGSFLYQVSTHEQSESAHGRSAPSTRRRQG 818
Query: 539 THASDARRTXTHVASRA--DTTTGHDXDEHPPHGLDIGQXVRHXXXXXXXXXXQKTTRAX 712
+H AR + H AS+ DT GH P G+ H + +
Sbjct: 819 SHHDQARDSSRHSASQEGQDTIRGH------PGSSRGGRQGSHYEQSVDRSGHSGSHHSH 872
Query: 713 IQTT*RXNAMXXXXXXXXSDTHEIXRRHTRETVTPDSATTHAAQLHGRGATPADTSRXAP 892
+ R +A + R TR+ T H+ H +T AD+SR +
Sbjct: 873 TTSQGRSDASHGTSGSRSAS------RQTRDEEQSGDGTRHSGSHHQEASTQADSSRHSQ 926
Query: 893 RG----------RRHPVATHDGRQSEITSGQYRRNHDETTRDDRGRAKTRAHSTSTHWTA 1042
G R + R SE S R+ +R+ RG A+ ++ S H +
Sbjct: 927 VGQGQSAGSRTSRNQGSSVSQDRDSEGQSEDSERHSGSASRNHRGSAQEQSRDGSRHPGS 986
Query: 1043 RTXHAADERQT 1075
A RQ+
Sbjct: 987 HDEDRAGHRQS 997
>pir||A35938 profilaggrin - human (fragments)
Length = 2248
Score = 45.1 bits (105), Expect = 0.005
Identities = 55/251 (21%), Positives = 84/251 (32%), Gaps = 18/251 (7%)
Frame = +2
Query: 377 QDNATDRSGQEKDPPQRTPTRTIGE*TAGRQTGDTXQXKXREQ------RNAAAVERRXX 538
Q + R + + TR +GR Q EQ R+A + RR
Sbjct: 537 QSVSGQRQARSHQQSHQESTRGQSRGRSGRSGSFLYQVSTHEQSESAHGRSAPSTRRRQG 596
Query: 539 THASDARRTXTHVASRA--DTTTGHDXDEHPPHGLDIGQXVRHXXXXXXXXXXQKTTRAX 712
+H AR + H AS+ DT GH P G+ H + +
Sbjct: 597 SHHDQARDSSRHSASQEGQDTIRGH------PGSSRGGRQGSHYEQSVDRSGHSGSHHSH 650
Query: 713 IQTT*RXNAMXXXXXXXXSDTHEIXRRHTRETVTPDSATTHAAQLHGRGATPADTSRXAP 892
+ R +A + R TR+ T H+ H +T AD+SR +
Sbjct: 651 TTSQGRSDASHGTSGSRSAS------RQTRDEEQSGDGTRHSGSHHQEASTQADSSRHSQ 704
Query: 893 RG----------RRHPVATHDGRQSEITSGQYRRNHDETTRDDRGRAKTRAHSTSTHWTA 1042
G R + R SE S R+ +R+ RG A+ ++ S H +
Sbjct: 705 VGQGQSAGSRTSRNQGSSVSQDRDSEGQSEDSERHSGSASRNHRGSAQEQSRDGSRHPGS 764
Query: 1043 RTXHAADERQT 1075
A RQ+
Sbjct: 765 HDEDRAGHRQS 775
>ref|XP_315753.1| ENSANGP00000018678 [Anopheles gambiae]|gi|21298810|gb|EAA10955.1|
ENSANGP00000018678 [Anopheles gambiae str. PEST]
Length = 373
Score = 44.7 bits (104), Expect = 0.006
Identities = 28/95 (29%), Positives = 40/95 (41%), Gaps = 3/95 (3%)
Frame = +3
Query: 42 GGADNRQTEQEKRLRXXEETXKT---RRSLERDARRRPTDGRSEDRSEPXSDTQESDPPQ 212
G +Q +EKRL+ EE K RR E D RR+ + R+ D +E +E
Sbjct: 107 GSKSKQQEAEEKRLKAAEEKRKRDEERRQKEEDKRRKEAEKRAHDEAEKRRKEEE----- 161
Query: 213 TARTRHARSEAKGQQQRSTRXHAAETXHXNXTVTH 317
+H R E + Q++ R H E H H
Sbjct: 162 ----KHLREEGERQRKELDRRHKEEEKHLREEERH 192
>emb|CAB55969.1| hypothetical protein [Homo sapiens]
Length = 341
Score = 40.8 bits (94), Expect = 0.090
Identities = 23/86 (26%), Positives = 44/86 (50%)
Frame = +3
Query: 6 PTGDPCKQRERTGGADNRQTEQEKRLRXXEETXKTRRSLERDARRRPTDGRSEDRSEPXS 185
P+ P + R+R +R+ E+ +R R ++ + RRS RD RRR E+R
Sbjct: 129 PSPLPHRDRDR-----DRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRE 183
Query: 186 DTQESDPPQTARTRHARSEAKGQQQR 263
+++ D + R+ +R A+ +++R
Sbjct: 184 RSKDKDRDRKRRSSRSRERARRERER 209
Score = 35.8 bits (81), Expect = 2.9
Identities = 21/83 (25%), Positives = 37/83 (44%)
Frame = +3
Query: 3 HPTGDPCKQRERTGGADNRQTEQEKRLRXXEETXKTRRSLERDARRRPTDGRSEDRSEPX 182
H D ++RER + R E+E+R + + RS +++ RRR + RS+D+
Sbjct: 134 HRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRE-RSKDKDRDR 192
Query: 183 SDTQESDPPQTARTRHARSEAKG 251
+ R R + E +G
Sbjct: 193 KRRSSRSRERARRERERKEELRG 215
>emb|CAA30303.1| hU1-70K protein (286 AA) [Homo sapiens]
Length = 285
Score = 40.8 bits (94), Expect = 0.090
Identities = 23/86 (26%), Positives = 44/86 (50%)
Frame = +3
Query: 6 PTGDPCKQRERTGGADNRQTEQEKRLRXXEETXKTRRSLERDARRRPTDGRSEDRSEPXS 185
P+ P + R+R +R+ E+ +R R ++ + RRS RD RRR E+R
Sbjct: 73 PSPLPHRDRDR-----DRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRE 127
Query: 186 DTQESDPPQTARTRHARSEAKGQQQR 263
+++ D + R+ +R A+ +++R
Sbjct: 128 RSKDKDRDRKRRSSRSRERARRERER 153
Score = 35.8 bits (81), Expect = 2.9
Identities = 21/83 (25%), Positives = 37/83 (44%)
Frame = +3
Query: 3 HPTGDPCKQRERTGGADNRQTEQEKRLRXXEETXKTRRSLERDARRRPTDGRSEDRSEPX 182
H D ++RER + R E+E+R + + RS +++ RRR + RS+D+
Sbjct: 78 HRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRE-RSKDKDRDR 136
Query: 183 SDTQESDPPQTARTRHARSEAKG 251
+ R R + E +G
Sbjct: 137 KRRSSRSRERARRERERKEELRG 159
>pir||A25707 U1 snRNP 70K protein - human|gi|36100|emb|CAA28352.1| unnamed
protein product [Homo sapiens]
Length = 614
Score = 40.8 bits (94), Expect = 0.090
Identities = 23/86 (26%), Positives = 44/86 (50%)
Frame = +3
Query: 6 PTGDPCKQRERTGGADNRQTEQEKRLRXXEETXKTRRSLERDARRRPTDGRSEDRSEPXS 185
P+ P + R+R +R+ E+ +R R ++ + RRS RD RRR E+R
Sbjct: 402 PSPLPHRDRDR-----DRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRE 456
Query: 186 DTQESDPPQTARTRHARSEAKGQQQR 263
+++ D + R+ +R A+ +++R
Sbjct: 457 RSKDKDRDRKRRSSRSRERARRERER 482
Score = 35.8 bits (81), Expect = 2.9
Identities = 21/83 (25%), Positives = 37/83 (44%)
Frame = +3
Query: 3 HPTGDPCKQRERTGGADNRQTEQEKRLRXXEETXKTRRSLERDARRRPTDGRSEDRSEPX 182
H D ++RER + R E+E+R + + RS +++ RRR + RS+D+
Sbjct: 407 HRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRE-RSKDKDRDR 465
Query: 183 SDTQESDPPQTARTRHARSEAKG 251
+ R R + E +G
Sbjct: 466 KRRSSRSRERARRERERKEELRG 488
>ref|NP_003080.2| U1 small nuclear ribonucleoprotein 70 kDa; small nuclear
ribonucleoprotein 70kD polypeptide (RNP antigen) [Homo
sapiens]|gi|13635663|sp|P08621|RU17_HUMAN U1 small
nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa)
(snRNP70) (U1-70K)|gi|337444|gb|AAA36572.1|
ribonucleoprotein antigen|gi|337447|gb|AAA03001.1| small
ribonucleoprotein 70 kd
protein|gi|683580|emb|CAA59278.1| 68 kDa (U1)
ribonucleoprotein [Homo
sapiens]|gi|12654935|gb|AAH01315.1| U1 small nuclear
ribonucleoprotein 70 kDa [Homo sapiens]
Length = 437
Score = 40.8 bits (94), Expect = 0.090
Identities = 23/86 (26%), Positives = 44/86 (50%)
Frame = +3
Query: 6 PTGDPCKQRERTGGADNRQTEQEKRLRXXEETXKTRRSLERDARRRPTDGRSEDRSEPXS 185
P+ P + R+R +R+ E+ +R R ++ + RRS RD RRR E+R
Sbjct: 225 PSPLPHRDRDR-----DRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRE 279
Query: 186 DTQESDPPQTARTRHARSEAKGQQQR 263
+++ D + R+ +R A+ +++R
Sbjct: 280 RSKDKDRDRKRRSSRSRERARRERER 305
Score = 35.8 bits (81), Expect = 2.9
Identities = 21/83 (25%), Positives = 37/83 (44%)
Frame = +3
Query: 3 HPTGDPCKQRERTGGADNRQTEQEKRLRXXEETXKTRRSLERDARRRPTDGRSEDRSEPX 182
H D ++RER + R E+E+R + + RS +++ RRR + RS+D+
Sbjct: 230 HRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRE-RSKDKDRDR 288
Query: 183 SDTQESDPPQTARTRHARSEAKG 251
+ R R + E +G
Sbjct: 289 KRRSSRSRERARRERERKEELRG 311
>emb|CAA29961.1| unnamed protein product [Homo sapiens]
Length = 301
Score = 40.8 bits (94), Expect = 0.090
Identities = 23/86 (26%), Positives = 44/86 (50%)
Frame = +3
Query: 6 PTGDPCKQRERTGGADNRQTEQEKRLRXXEETXKTRRSLERDARRRPTDGRSEDRSEPXS 185
P+ P + R+R +R+ E+ +R R ++ + RRS RD RRR E+R
Sbjct: 176 PSPLPHRDRDR-----DRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRE 230
Query: 186 DTQESDPPQTARTRHARSEAKGQQQR 263
+++ D + R+ +R A+ +++R
Sbjct: 231 RSKDKDRDRKRRSSRSRERARRERER 256
Score = 35.8 bits (81), Expect = 2.9
Identities = 21/83 (25%), Positives = 37/83 (44%)
Frame = +3
Query: 3 HPTGDPCKQRERTGGADNRQTEQEKRLRXXEETXKTRRSLERDARRRPTDGRSEDRSEPX 182
H D ++RER + R E+E+R + + RS +++ RRR + RS+D+
Sbjct: 181 HRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRE-RSKDKDRDR 239
Query: 183 SDTQESDPPQTARTRHARSEAKG 251
+ R R + E +G
Sbjct: 240 KRRSSRSRERARRERERKEELRG 262
>emb|CAA29963.1| unnamed protein product [Homo sapiens]
Length = 233
Score = 40.8 bits (94), Expect = 0.090
Identities = 23/86 (26%), Positives = 44/86 (50%)
Frame = +3
Query: 6 PTGDPCKQRERTGGADNRQTEQEKRLRXXEETXKTRRSLERDARRRPTDGRSEDRSEPXS 185
P+ P + R+R +R+ E+ +R R ++ + RRS RD RRR E+R
Sbjct: 40 PSPLPHRDRDR-----DRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRE 94
Query: 186 DTQESDPPQTARTRHARSEAKGQQQR 263
+++ D + R+ +R A+ +++R
Sbjct: 95 RSKDKDRDRKRRSSRSRERARRERER 120
Score = 35.8 bits (81), Expect = 2.9
Identities = 21/83 (25%), Positives = 37/83 (44%)
Frame = +3
Query: 3 HPTGDPCKQRERTGGADNRQTEQEKRLRXXEETXKTRRSLERDARRRPTDGRSEDRSEPX 182
H D ++RER + R E+E+R + + RS +++ RRR + RS+D+
Sbjct: 45 HRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRE-RSKDKDRDR 103
Query: 183 SDTQESDPPQTARTRHARSEAKG 251
+ R R + E +G
Sbjct: 104 KRRSSRSRERARRERERKEELRG 126
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 131
effective length of database: 381,428,880
effective search space used: 157148698560
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)