BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BE037824.f
         (1498 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||S54157  extensin-like protein - cowpea (fragment)             48   7e-04
pir||T03221  probable polyketide synthase module 1 - Strepto...    34   9.9  
gb|AAN63608.1|  ligand-independent activating molecule for e...    34   9.9  
dbj|BAC87052.1|  unnamed protein product [Homo sapiens]            30   5.2  

>pir||S54157 extensin-like protein - cowpea (fragment)
          Length = 279

 Score = 47.8 bits (112), Expect = 7e-04
 Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 7/155 (4%)
 Frame = +2

Query: 818  FTKRCITSILHNYLHPCLSLSRRVSYYTISTRHIHA*SSHIHCTTLYLCHHSVIIDFSIA 997
            FT   +  +L ++LH C+S        + S  H H    H+  +T +   H ++    + 
Sbjct: 107  FTSHHLLHLLPHHLHMCISRHHHHLPMSTSPHHHHLLHHHLPMSTSHPLLHLLLHHLHMC 166

Query: 998  IA*FYSPSTPYHTTLMIHTPLNTQPTTISLLCVKIDN-TRVHAPLLFPNTSPTCM-PHHN 1171
            I      S  +H  L +  P  T P  + LL   +   T +H   L P+  P C+ PHH+
Sbjct: 167  I------SHHHHHLLHLRLPTFTSPHLLHLLPHHLPMFTSLHLLHLLPHHLPMCISPHHH 220

Query: 1172 ---YHTLLLVVPIYMLRLL--FFYLLSSIHHPYVL 1261
               +H LL+    ++L LL    ++  S HH ++L
Sbjct: 221  HLLHHHLLMFTSHHLLHLLPHHLHMCISRHHHHLL 255




 Score = 35.0 bits (79), Expect = 4.4
 Identities = 39/163 (23%), Positives = 68/163 (40%), Gaps = 14/163 (8%)
 Frame = +2

Query: 842  ILHNYLHPCLSLSRR---VSYYTISTRH--IHA*SSHIH-CTTLYLCHHSVIIDFSIAIA 1003
            +LH++LH C+S  R      +  + T H  +H    H+H C + +  HH ++        
Sbjct: 3    LLHHHLHMCISHHRHHLLHHHLLMFTSHHLLHLLPHHLHMCISRH--HHHLL-------- 52

Query: 1004 *FYSPSTPYHTTLMI--HTPLNTQPTTISLLCVKIDNTRVHAPLLFPNTSPTCMPHHNYH 1177
                    +H  LM   H  L+  P  + +       T +H   L P+  P C+  H++H
Sbjct: 53   --------HHHLLMFTSHHLLHLLPHHLPMF------TSLHLLHLLPHHLPMCISPHHHH 98

Query: 1178 T----LLLVVPIYMLRLL--FFYLLSSIHHPYVLFLTXVRSYH 1288
                 LL+    ++L LL    ++  S HH ++   T    +H
Sbjct: 99   LLHRHLLMFTSHHLLHLLPHHLHMCISRHHHHLPMSTSPHHHH 141



>pir||T03221 probable polyketide synthase module 1 - Streptomyces
            hygroscopicus|gi|2624948|gb|AAC38061.1| PKS module 1
            [Streptomyces hygroscopicus]
          Length = 2723

 Score = 33.9 bits (76), Expect = 9.9
 Identities = 20/44 (45%), Positives = 23/44 (51%), Gaps = 4/44 (9%)
 Frame = +2

Query: 1031 HTTL---MIHTPLN-TQPTTISLLCVKIDNTRVHAPLLFPNTSP 1150
            HTTL   +IHTP+  T PTTI L     DNT  H   +    SP
Sbjct: 1932 HTTLDELIIHTPITLTHPTTIQLTISPPDNTNTHTLTVHTRNSP 1975



>gb|AAN63608.1| ligand-independent activating molecule for estrogen receptor [Rattus
            norvegicus]
          Length = 242

 Score = 33.9 bits (76), Expect = 9.9
 Identities = 36/157 (22%), Positives = 59/157 (36%), Gaps = 22/157 (14%)
 Frame = +2

Query: 860  HPCLSLSRRVSYYTISTRHIHA*SSHIHCTTLYLCHHSVIIDFSIAIA*FYSPSTP---- 1027
            H CL  +       + T      SSH H   L+  H  ++      ++  ++ +T     
Sbjct: 7    HQCLLFTPPPPVSALHTTTTSVCSSHHHQCLLFNHHRCLLFTPPPPVSALHTTTTSVCSS 66

Query: 1028 YHTTLMIHTP-----LNTQPTTISLLCVKI-----DNTRVHAPLLFP--------NTSPT 1153
            +H   ++ TP     L+T  TT + +C         +   H  LLF          T+  
Sbjct: 67   HHHHCLLFTPPPLSALHTTTTTTTSVCFHTITSVCSSHHHHQCLLFTPPPLSALHTTTTV 126

Query: 1154 CMPHHNYHTLLLVVPIYMLRLLFFYLLSSIHHPYVLF 1264
            C  HH++  L    P+  L      + SS HH  +LF
Sbjct: 127  CSSHHHHCLLFTPPPLSALHTTTTSVCSSHHHHCLLF 163



>dbj|BAC87052.1| unnamed protein product [Homo sapiens]
          Length = 415

 Score = 29.6 bits (65), Expect(2) = 5.2
 Identities = 38/170 (22%), Positives = 68/170 (39%), Gaps = 12/170 (7%)
 Frame = +2

Query: 845  LHNYLHPCLSLSRRVSYYTISTRHIHA*SSHIH-------CTTLYLCHHSVIIDFSIAIA 1003
            +H Y H           +T +  HIH    HIH       CT +Y C ++V+   +    
Sbjct: 105  MHTYTHA----------HTHAHIHIHV---HIHMNIHTHTCTHIYTCTYTVVCTHTHMHI 151

Query: 1004 *FYSPSTPYHTTLMIHTPLNTQPTTISLLCVKID---NTRVHAPLLFPNTSPTCMPHHNY 1174
              +  +   HT + IH+  +    T +L C +      T  H  +  P  + T   H + 
Sbjct: 152  YTHMHT---HTCIHIHSDTHLHIYTHTLTCTQTQIHTCTHTHIHIHMPTHTRT-YTHMHT 207

Query: 1175 HTLLLVVPIYMLRLLFFYLLSSIH-HPYVLFLTXVRSY-HDYPRSCSYAY 1318
            HT L    I++   ++ +  + IH H +    T   +Y H +   C++ +
Sbjct: 208  HT-LTCTQIHIYTHIYMHAHTPIHSHIHTWTHTHAHTYTHAHIHVCTHIH 256




 Score = 23.9 bits (50), Expect(2) = 5.2
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 771 YFYLHSHYARRLTRHISRNAVSHRYYIT 854
           Y Y H H      RHI  +  +H + +T
Sbjct: 56  YIYTHMHIHSHAHRHIHTHICTHAHTLT 83



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 130
effective length of database: 383,324,178
effective search space used: 141063297504
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)