BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 16760.F
(498 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g55565.1 68418.m06925 expressed protein 971 0.0
At5g54510.1 68418.m06787 auxin-responsive GH3 protein, puta... 38 0.068
At5g51580.1 68418.m06395 expressed protein 38 0.068
At3g50830.1 68416.m05566 stress-responsive protein, putativ... 38 0.068
At5g18120.1 68418.m02127 expressed protein 36 0.27
>At5g55565.1 68418.m06925 expressed protein
Length = 498
Score = 971 bits (490), Expect = 0.0
Identities = 497/498 (99%), Gaps = 1/498 (0%)
Strand = Plus / Plus
Query: 2 aacaaatttttaataaagagagaaattaagaaagaagaagaaaaaatacagtagttggtt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aacaaatttttaataaagagagaaattaagaaagaagaagaaaaaatacagtagttggtt 60
Query: 62 ttactattcggttggtgatccttttgttcattttgataggaatgacacaaggaaagcgta 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttactattcggttggtgatccttttgttcattttgataggaatgacacaaggaaagcgta 120
Query: 122 aacatccatgtgatcttaaaaatccaagcaaacgagcaccgcctgcaacatgtaataaac 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aacatccatgtgatcttaaaaatccaagcaaacgagcaccgcctgcaacatgtaataaac 180
Query: 182 ctaatggtgccatactatgtggagatttttgcctacatgaaggctacaacataggaaaat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctaatggtgccatactatgtggagatttttgcctacatgaaggctacaacataggaaaat 240
Query: 242 gtgtaatgagaagaacaggaaaggcttgcatttgcagccagtgcgaaggttggtgagggg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtgtaatgagaagaacaggaaaggcttgcatttgcagccagtgcgaaggttggtgagggg 300
Query: 302 tgcgactgctcgggttctaaattccatcatttatattataaaacataagttagatggcca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgcgactgctcgggttctaaattccatcatttatattataaaacataagttagatggcca 360
Query: 362 atcattttctgccacgtcatatttttttaaaaaagggaagta-aataaaaaataatgtaa 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 361 atcattttctgccacgtcatatttttttaaaaaagggaagtacaataaaaaataatgtaa 420
Query: 421 cggaagataaacttcctaaaaataaggcagtttcttttctttgaaagattatattgatat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cggaagataaacttcctaaaaataaggcagtttcttttctttgaaagattatattgatat 480
Query: 481 tagaacttgttcgtaatc 498
||||||||||||||||||
Sbjct: 481 tagaacttgttcgtaatc 498
>At5g54510.1 68418.m06787 auxin-responsive GH3 protein, putative (DFL-1)
identical to auxin-responsive GH3 homologue
[Arabidopsis thaliana] GI:11041726; similar to
auxin-responsive GH3 product [Glycine max] GI:18591;
contains Pfam profile PF03321: GH3 auxin-responsive
promoter
Length = 2181
Score = 38.2 bits (19), Expect = 0.068
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 19 gagagaaattaagaaagaa 37
|||||||||||||||||||
Sbjct: 84 gagagaaattaagaaagaa 66
>At5g51580.1 68418.m06395 expressed protein
Length = 952
Score = 38.2 bits (19), Expect = 0.068
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 17 aagagagaaattaagaaagaagaagaa 43
|||||||||| | ||||||||||||||
Sbjct: 871 aagagagaaagtgagaaagaagaagaa 897
>At3g50830.1 68416.m05566 stress-responsive protein, putative similar to cold
acclimation WCOR413-like protein gamma form [Hordeum
vulgare] gi|18449100|gb|AAL69988; similar to
stress-regulated protein SAP1 [Xerophyta viscosa]
gi|21360378|gb|AAM47505; identical to cDNA cold
acclimation protein WCOR413-like protein beta form
GI:10121842
Length = 1016
Score = 38.2 bits (19), Expect = 0.068
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 31 gaaagaagaagaaaaaata 49
|||||||||||||||||||
Sbjct: 122 gaaagaagaagaaaaaata 140
>At5g18120.1 68418.m02127 expressed protein
Length = 1539
Score = 36.2 bits (18), Expect = 0.27
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 32 aaagaagaagaaaaaata 49
||||||||||||||||||
Sbjct: 1467 aaagaagaagaaaaaata 1450
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,084
Number of Sequences: 29161
Number of extensions: 28084
Number of successful extensions: 2565
Number of sequences better than 10.0: 107
length of query: 498
length of database: 44,058,232
effective HSP length: 17
effective length of query: 481
effective length of database: 43,562,495
effective search space: 20953560095
effective search space used: 20953560095
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)