BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 267336.F
(579 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM67320.1| unknown [Arabidopsis thaliana] 104 1e-21
ref|XP_230282.2| similar to CH-TOG protein (Colonic and hep... 32 6.0
>gb|AAM67320.1| unknown [Arabidopsis thaliana]
Length = 65
Score = 104 bits (260), Expect = 1e-21
Identities = 52/65 (80%), Positives = 52/65 (80%)
Frame = +2
Query: 107 MKIIRLSQNSQSQSMFILNXXXXXXXXXXXXXEGCWNWERRKIESLFGRALQFDGVEEKN 286
MKIIRLSQNSQSQSMFILN EGCWNWERRKIESLFGRALQFDGVEEKN
Sbjct: 1 MKIIRLSQNSQSQSMFILNFLYFVSFVSFSLFEGCWNWERRKIESLFGRALQFDGVEEKN 60
Query: 287 VKKRA 301
VKKRA
Sbjct: 61 VKKRA 65
>ref|XP_230282.2| similar to CH-TOG protein (Colonic and hepatic tumor over-expressed
protein) [Rattus norvegicus]
Length = 1915
Score = 32.3 bits (72), Expect = 6.0
Identities = 15/32 (46%), Positives = 24/32 (74%)
Frame = -3
Query: 343 TTTSASSVGNFKLSCSLLHILFFYTIKLECSP 248
T+T ASSVG+ SCS++++L + T +LE +P
Sbjct: 74 TSTIASSVGDPLPSCSIIYLLLWKTSELEAAP 105
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 119
effective length of database: 404,172,456
effective search space used: 29504589288
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)