BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 266951.F
(711 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g01590.1 68418.m00074 expressed protein 1232 0.0
At3g28920.1 68416.m03611 zinc finger homeobox family protei... 36 0.38
At4g27370.1 68417.m03929 myosin family protein contains Pfa... 34 1.5
At4g26400.2 68417.m03800 zinc finger (C3HC4-type RING finge... 34 1.5
At4g26400.1 68417.m03799 zinc finger (C3HC4-type RING finge... 34 1.5
>At5g01590.1 68418.m00074 expressed protein
Length = 1963
Score = 1232 bits (621), Expect = 0.0
Identities = 622/623 (99%)
Strand = Plus / Minus
Query: 1 tcctttgatttgatcgccttcctaggcatgggcctcccgtcaaagcccgggacatgagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tcctttgatttgatcgccttcctaggcatgggcctcccgtcaaagcccgggacatgagga 564
Query: 61 atggctctccagtaatccttgtcttctttccgataaggcgtgtcgttatcctcgagctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atggctctccagtaatccttgtcttctttccgataaggcgtgtcgttatcctcgagctcc 504
Query: 121 atcttgttcatatcgtcggcaatctcctcggcgcgagtcataaactgaaccacaggactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atcttgttcatatcgtcggcaatctcctcggcgcgagtcataaactgaaccacaggactc 444
Query: 181 gctcgaaaactctcccaccatttctgctcagcttcaatctcttctgtgctcggattctcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gctcgaaaactctcccaccatttctgctcagcttcaatctcttctgtgctcggattctcc 384
Query: 241 ttcttctcgaaaactggatcttcgttgagaagcttatccacttctggagtgtgcctgtaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttcttctcgaaaactggatcttcgttgagaagcttatccacttctggagtgtgcctgtaa 324
Query: 301 tccggtatgttctcacactcccataagaactgctctgctatttgcttgtacggtcctggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tccggtatgttctcacactcccataagaactgctctgctatttgcttgtacggtcctggt 264
Query: 361 tcgtcggttcctgctgtttcgggttttggggacttctttgagaattttggaagtccaatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcgtcggttcctgctgtttcgggttttggggacttctttgagaattttggaagtccaatc 204
Query: 421 gaagcgaaattcggagactgcgacttgggaaagaaggaatcagcgagcgagacgaasttg 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 203 gaagcgaaattcggagactgcgacttgggaaagaaggaatcagcgagcgagacgaagttg 144
Query: 481 atggacgggactgggttcggtggtttctcgaaccagttttgaaatggattgaagttcatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 atggacgggactgggttcggtggtttctcgaaccagttttgaaatggattgaagttcatc 84
Query: 541 gacgacattgttgaacacacatacagtcgttctccagccaaagccaaaagaaaattaggg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 gacgacattgttgaacacacatacagtcgttctccagccaaagccaaaagaaaattaggg 24
Query: 601 ttcagggctttattggctgatgt 623
|||||||||||||||||||||||
Sbjct: 23 ttcagggctttattggctgatgt 1
>At3g28920.1 68416.m03611 zinc finger homeobox family protein / ZF-HD homeobox
family protein contains Pfam PF04770: ZF-HD protein
dimerisation region; contains Pfam TIGR01566: ZF-HD
homeobox protein Cys/His-rich domain; contains TIGRFAM
TIGR01565: homeobox domain, ZF-HD class; similar to ZF-HD
homeobox protein (GI:13277220) [Flaveria bidentis]
Length = 1388
Score = 36.2 bits (18), Expect = 0.38
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 694 aaacatcatgtcgttttg 711
||||||||||||||||||
Sbjct: 1243 aaacatcatgtcgttttg 1260
>At4g27370.1 68417.m03929 myosin family protein contains Pfam profiles: PF00063
myosin head (motor domain), PF00612 IQ
calmodulin-binding motif
Length = 3381
Score = 34.2 bits (17), Expect = 1.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 74 aatccttgtcttctttc 90
|||||||||||||||||
Sbjct: 190 aatccttgtcttctttc 174
>At4g26400.2 68417.m03800 zinc finger (C3HC4-type RING finger) family protein
contains Pfam domain, PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 1390
Score = 34.2 bits (17), Expect = 1.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 191 tctcccaccatttctgc 207
|||||||||||||||||
Sbjct: 66 tctcccaccatttctgc 82
>At4g26400.1 68417.m03799 zinc finger (C3HC4-type RING finger) family protein
contains Pfam domain, PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 1407
Score = 34.2 bits (17), Expect = 1.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 191 tctcccaccatttctgc 207
|||||||||||||||||
Sbjct: 66 tctcccaccatttctgc 82
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,301
Number of Sequences: 29161
Number of extensions: 22301
Number of successful extensions: 588
Number of sequences better than 10.0: 51
length of query: 711
length of database: 44,058,232
effective HSP length: 17
effective length of query: 694
effective length of database: 43,562,495
effective search space: 30232371530
effective search space used: 30232371530
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)