BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 262289.F
(524 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g26590.1 68416.m03319 MATE efflux family protein similar... 639 0.0
At5g38030.1 68418.m04581 MATE efflux family protein similar... 230 8e-60
At1g12950.1 68414.m01504 MATE efflux family protein similar... 40 0.018
At5g59580.1 68418.m07466 UDP-glucoronosyl/UDP-glucosyl tran... 34 1.1
At4g19860.1 68417.m02910 lecithin:cholesterol acyltransfera... 34 1.1
>At3g26590.1 68416.m03319 MATE efflux family protein similar to ripening
regulated protein DDTFR18 [Lycopersicon esculentum]
GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 1785
Score = 639 bits (322), Expect = 0.0
Identities = 329/332 (99%)
Strand = Plus / Minus
Query: 1 aacgacggagttttcgacggagacagcggcaagagcgatggtgctgatgtgaccggcgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aacgacggagttttcgacggagacagcggcaagagcgatggtgctgatgtgaccggcgaa 273
Query: 61 gacctgagtaatagcgccgagagaatattggttcacggatgtgaaaatggcgggaccggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gacctgagtaatagcgccgagagaatattggttcacggatgtgaaaatggcgggaccggc 213
Query: 121 caagtaccatagctttttggtttccacgttgaactccctaacgaagccaccgacggtggt 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 212 caagtaccatagctttttggtttccacgttgaattccctaacgaagccaccgacggtggt 153
Query: 181 gatcggaggaatatcgtcgacggataagaagggaagatcagaacgttcttccgccgcagt 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 152 gatcggaggaatatcgtcgacggataagaaaggaagatcagaacgttcttccgccgcagt 93
Query: 241 gagaagcgtctccgttatatctttgtcttttgccatcttaagrgaaagagatggagagat 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 92 gagaagcgtctccgttatatctttgtcttttgccatcttaagagaaagagatggagagat 33
Query: 301 taaaggaggtcgaagactaaggaccaacgagt 332
||||||||||||||||||||||||||||||||
Sbjct: 32 taaaggaggtcgaagactaaggaccaacgagt 1
>At5g38030.1 68418.m04581 MATE efflux family protein similar to ripening
regulated protein DDTFR18 [Lycopersicon esculentum]
GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family; putative
multidrug efflux protein NorM - Vibrio parahaemolyticus,
EMBL:AB010463
Length = 1804
Score = 230 bits (116), Expect = 8e-60
Identities = 215/248 (86%)
Strand = Plus / Minus
Query: 8 gagttttcgacggagacagcggcaagagcgatggtgctgatgtgaccggcgaagacctga 67
|||||||| |||||||| || || |||||||||||||||||||| |||||||||||||||
Sbjct: 336 gagttttcaacggagaccgctgcgagagcgatggtgctgatgtgtccggcgaagacctga 277
Query: 68 gtaatagcgccgagagaatattggttcacggatgtgaaaatggcgggaccggccaagtac 127
||| ||||||||||||||||||| | | || |||||||||| || || |||||||||
Sbjct: 276 gtagcagcgccgagagaatattgggttatagacatgaaaatggctggccctgccaagtac 217
Query: 128 catagctttttggtttccacgttgaactccctaacgaagccaccgacggtggtgatcgga 187
|||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||
Sbjct: 216 catagctttttgacctccacgttgaactccttgacgaagccaccaacggtggtgatcgga 157
Query: 188 ggaatatcgtcgacggataagaagggaagatcagaacgttcttccgccgcagtgagaagc 247
|||||||| || |||||| |||| |||||| ||| ||||||||||||||| |||||
Sbjct: 156 ggaatatcttccacggatgagaaaggaagagcaggtggttcttccgccgcagatagaagg 97
Query: 248 gtctccgt 255
||||||||
Sbjct: 96 gtctccgt 89
>At1g12950.1 68414.m01504 MATE efflux family protein similar to ripening
regulated protein DDTFR18 [Lycopersicon esculentum]
GI:12231296; contains Pfam profile PF01554: MatE
Length = 1820
Score = 40.2 bits (20), Expect = 0.018
Identities = 71/88 (80%)
Strand = Plus / Minus
Query: 4 gacggagttttcgacggagacagcggcaagagcgatggtgctgatgtgaccggcgaagac 63
||||||||| || | |||||| ||||||||||| | ||||| || || |||||||| ||
Sbjct: 418 gacggagttctcaatggagacggcggcaagagcaagagtgctaatatgtccggcgaaaac 359
Query: 64 ctgagtaatagcgccgagagaatattgg 91
||||| | || |||||||| ||||||
Sbjct: 358 ttgagtgacggctccgagagagtattgg 331
>At5g59580.1 68418.m07466 UDP-glucoronosyl/UDP-glucosyl transferase family protein
contains Pfam profile: PF00201 UDP-glucoronosyl and
UDP-glucosyl transferase
Length = 1522
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 470 tagacaaaatcattgtt 486
|||||||||||||||||
Sbjct: 1503 tagacaaaatcattgtt 1519
>At4g19860.1 68417.m02910 lecithin:cholesterol acyltransferase family protein /
LACT family protein similar to lysosomal phospholipase A2
[Mus musculus] GI:18699602; contains Pfam profile
PF02450: Lecithin:cholesterol acyltransferase
(phosphatidylcholine-sterol acyltransferase)
Length = 1854
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 456 aaaatggctaaatgtag 472
|||||||||||||||||
Sbjct: 1393 aaaatggctaaatgtag 1409
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,266
Number of Sequences: 29161
Number of extensions: 15266
Number of successful extensions: 1286
Number of sequences better than 10.0: 24
length of query: 524
length of database: 44,058,232
effective HSP length: 17
effective length of query: 507
effective length of database: 43,562,495
effective search space: 22086184965
effective search space used: 22086184965
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 16 (32.3 bits)