BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 256622.F
(627 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g31835.1 68414.m03911 expressed protein 1241 0.0
At5g58680.1 68418.m07352 armadillo/beta-catenin repeat fami... 40 0.022
At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammo... 38 0.087
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) fami... 36 0.34
At3g16555.1 68416.m02115 F-box family protein contains F-bo... 36 0.34
>At1g31835.1 68414.m03911 expressed protein
Length = 626
Score = 1241 bits (626), Expect = 0.0
Identities = 626/626 (100%)
Strand = Plus / Plus
Query: 2 aaaaccctaattctccactcttgtatcagccgccgttaaatgtcaaatcctgcgtcatag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaaccctaattctccactcttgtatcagccgccgttaaatgtcaaatcctgcgtcatag 60
Query: 62 tttctttcttagatgggtgttgctctaatttacagtatatcctgaatcggtagcaaagtt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttctttcttagatgggtgttgctctaatttacagtatatcctgaatcggtagcaaagtt 120
Query: 122 tgatgctttttgttttatttgttcaaatttatggtgttgagctttgtgtgattggggtta 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgatgctttttgttttatttgttcaaatttatggtgttgagctttgtgtgattggggtta 180
Query: 182 agagattgatgagaaaattgcactatgtatcgaaggctatgtcaaattacagtgacatag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agagattgatgagaaaattgcactatgtatcgaaggctatgtcaaattacagtgacatag 240
Query: 242 tctttaatgcaaaagtgcagaaagagagagctgttaaatcagcaagcggccagacaaccg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tctttaatgcaaaagtgcagaaagagagagctgttaaatcagcaagcggccagacaaccg 300
Query: 302 tcgggatagatccacaggtgaagcggattgattcctctgctttcagctactaaatctatc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcgggatagatccacaggtgaagcggattgattcctctgctttcagctactaaatctatc 360
Query: 362 ctacatacttgttctcattaagaatctcatttttgaatacttgagtttgtttgtgttatt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctacatacttgttctcattaagaatctcatttttgaatacttgagtttgtttgtgttatt 420
Query: 422 gagttgttgttgtttattgcaccttgtatcgaaggacatgcctcgttctgatggcatggc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gagttgttgttgtttattgcaccttgtatcgaaggacatgcctcgttctgatggcatggc 480
Query: 482 cattttcgaggatgcgtaaaggaatagctgttaattcagtaagcggccagacaaccgttg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cattttcgaggatgcgtaaaggaatagctgttaattcagtaagcggccagacaaccgttg 540
Query: 542 ggatagatccacagttgttgcggtttttctctccgctctcaactactaaatctttcccac 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ggatagatccacagttgttgcggtttttctctccgctctcaactactaaatctttcccac 600
Query: 602 attttttgtatcaatccacaattttc 627
||||||||||||||||||||||||||
Sbjct: 601 attttttgtatcaatccacaattttc 626
>At5g58680.1 68418.m07352 armadillo/beta-catenin repeat family protein contains
Pfam profile: PF00514 armadillo/beta-catenin-like
repeats (4 copies)
Length = 1240
Score = 40.1 bits (20), Expect = 0.022
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 329 ttgattcctctgctttcagc 348
||||||||||||||||||||
Sbjct: 93 ttgattcctctgctttcagc 112
>At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia ligase, putative
similar to SP|P17812 CTP synthase (EC 6.3.4.2)
(UTP--ammonia ligase) {Homo sapiens}; contains Pfam
profile PF00117: glutamine amidotransferase class-I
Length = 1890
Score = 38.2 bits (19), Expect = 0.087
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 409 tgtttgtgttattgagttg 427
|||||||||||||||||||
Sbjct: 455 tgtttgtgttattgagttg 473
>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family protein contains
Pfam profile: PF00010 helix-loop-helix DNA-binding
domain
Length = 1330
Score = 36.2 bits (18), Expect = 0.34
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 418 tattgagttgttgttgtt 435
||||||||||||||||||
Sbjct: 967 tattgagttgttgttgtt 950
>At3g16555.1 68416.m02115 F-box family protein contains F-box domain
Pfam:PF00646
Length = 1050
Score = 36.2 bits (18), Expect = 0.34
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 328 attgattcctctgctttc 345
||||||||||||||||||
Sbjct: 979 attgattcctctgctttc 996
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,617
Number of Sequences: 29161
Number of extensions: 23617
Number of successful extensions: 2009
Number of sequences better than 10.0: 52
length of query: 627
length of database: 44,058,232
effective HSP length: 17
effective length of query: 610
effective length of database: 43,562,495
effective search space: 26573121950
effective search space used: 26573121950
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)