BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 256622.F
         (627 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31835.1  68414.m03911 expressed protein                      1241   0.0  
At5g58680.1  68418.m07352 armadillo/beta-catenin repeat fami...    40   0.022
At4g02120.1  68417.m00283 CTP synthase, putative / UTP--ammo...    38   0.087
At3g19860.1  68416.m02515 basic helix-loop-helix (bHLH) fami...    36   0.34 
At3g16555.1  68416.m02115 F-box family protein contains F-bo...    36   0.34 
>At1g31835.1 68414.m03911 expressed protein
          Length = 626

 Score = 1241 bits (626), Expect = 0.0
 Identities = 626/626 (100%)
 Strand = Plus / Plus

                                                                       
Query: 2   aaaaccctaattctccactcttgtatcagccgccgttaaatgtcaaatcctgcgtcatag 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaaaccctaattctccactcttgtatcagccgccgttaaatgtcaaatcctgcgtcatag 60

                                                                       
Query: 62  tttctttcttagatgggtgttgctctaatttacagtatatcctgaatcggtagcaaagtt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tttctttcttagatgggtgttgctctaatttacagtatatcctgaatcggtagcaaagtt 120

                                                                       
Query: 122 tgatgctttttgttttatttgttcaaatttatggtgttgagctttgtgtgattggggtta 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgatgctttttgttttatttgttcaaatttatggtgttgagctttgtgtgattggggtta 180

                                                                       
Query: 182 agagattgatgagaaaattgcactatgtatcgaaggctatgtcaaattacagtgacatag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agagattgatgagaaaattgcactatgtatcgaaggctatgtcaaattacagtgacatag 240

                                                                       
Query: 242 tctttaatgcaaaagtgcagaaagagagagctgttaaatcagcaagcggccagacaaccg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tctttaatgcaaaagtgcagaaagagagagctgttaaatcagcaagcggccagacaaccg 300

                                                                       
Query: 302 tcgggatagatccacaggtgaagcggattgattcctctgctttcagctactaaatctatc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcgggatagatccacaggtgaagcggattgattcctctgctttcagctactaaatctatc 360

                                                                       
Query: 362 ctacatacttgttctcattaagaatctcatttttgaatacttgagtttgtttgtgttatt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctacatacttgttctcattaagaatctcatttttgaatacttgagtttgtttgtgttatt 420

                                                                       
Query: 422 gagttgttgttgtttattgcaccttgtatcgaaggacatgcctcgttctgatggcatggc 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gagttgttgttgtttattgcaccttgtatcgaaggacatgcctcgttctgatggcatggc 480

                                                                       
Query: 482 cattttcgaggatgcgtaaaggaatagctgttaattcagtaagcggccagacaaccgttg 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cattttcgaggatgcgtaaaggaatagctgttaattcagtaagcggccagacaaccgttg 540

                                                                       
Query: 542 ggatagatccacagttgttgcggtttttctctccgctctcaactactaaatctttcccac 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ggatagatccacagttgttgcggtttttctctccgctctcaactactaaatctttcccac 600

                                     
Query: 602 attttttgtatcaatccacaattttc 627
           ||||||||||||||||||||||||||
Sbjct: 601 attttttgtatcaatccacaattttc 626
>At5g58680.1 68418.m07352 armadillo/beta-catenin repeat family protein contains
           Pfam profile: PF00514 armadillo/beta-catenin-like
           repeats (4 copies)
          Length = 1240

 Score = 40.1 bits (20), Expect = 0.022
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 329 ttgattcctctgctttcagc 348
           ||||||||||||||||||||
Sbjct: 93  ttgattcctctgctttcagc 112
>At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia ligase, putative
           similar to SP|P17812 CTP synthase (EC 6.3.4.2)
           (UTP--ammonia ligase) {Homo sapiens}; contains Pfam
           profile PF00117: glutamine amidotransferase class-I
          Length = 1890

 Score = 38.2 bits (19), Expect = 0.087
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 409 tgtttgtgttattgagttg 427
           |||||||||||||||||||
Sbjct: 455 tgtttgtgttattgagttg 473
>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family protein contains
           Pfam profile: PF00010 helix-loop-helix DNA-binding
           domain
          Length = 1330

 Score = 36.2 bits (18), Expect = 0.34
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 418 tattgagttgttgttgtt 435
           ||||||||||||||||||
Sbjct: 967 tattgagttgttgttgtt 950
>At3g16555.1 68416.m02115 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 1050

 Score = 36.2 bits (18), Expect = 0.34
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 328 attgattcctctgctttc 345
           ||||||||||||||||||
Sbjct: 979 attgattcctctgctttc 996
  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,617
Number of Sequences: 29161
Number of extensions: 23617
Number of successful extensions: 2009
Number of sequences better than 10.0: 52
length of query: 627
length of database: 44,058,232
effective HSP length: 17
effective length of query: 610
effective length of database: 43,562,495
effective search space: 26573121950
effective search space used: 26573121950
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)