BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 255818.F
(610 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57160.1 68416.m06364 expressed protein 1191 0.0
At2g41420.1 68415.m05111 proline-rich family protein contai... 80 2e-14
At5g67600.1 68418.m08524 expressed protein 54 1e-06
At5g38820.1 68418.m04695 amino acid transporter family prot... 38 0.084
At4g01210.1 68417.m00159 glycosyltransferase family protein... 38 0.084
>At3g57160.1 68416.m06364 expressed protein
Length = 609
Score = 1191 bits (601), Expect = 0.0
Identities = 607/609 (99%)
Strand = Plus / Plus
Query: 1 ctcacttttgttctctgttgcatcatcttccaaactcccgaagaagaagaaaataactac 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcactttttttctctgttgcatcatcttccaaactcccgaagaagaagaaaataactac 60
Query: 61 aatgagtcaacaacctcctgctgttggtgttcctccttctcatgcttatccggcggaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatgagtcaacaacctcctgctgttggtgttcctccttctcatgcttatccggcggaagg 120
Query: 121 accacccaaggacgcttatccacctccgggacaaccctatcctcagcaaggatatcctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 accacccaaggacgcttatccacctccgggacaaccctatcctcagcaaggatatcctcc 180
Query: 181 tccgcagggatatcctcaacaaggttatcctcctcaaggttatcctccgcaggggtaccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tccgcagggatatcctcaacaaggttatcctcctcaaggttatcctccgcaggggtaccc 240
Query: 241 tgaacaaggatatcctcaacaaggttacccacctcagcaacaacagcaacagaaacacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgaacaaggatatcctcaacaaggttacccacctcagcaacaacagcaacagaaacacag 300
Query: 301 tcctggtatgcttgaaggatgtattgctgctctgtgctgttgctgtgtcttggacgcttg 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 301 tcctggtatgcttgaaggatgtattgctgctctgtgctgttactgtgtcttggacgcttg 360
Query: 361 cttctgagtggaggtctccgcttgaagctgcaaaattggtttataccgatgatctcatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cttctgagtggaggtctccgcttgaagctgcaaaattggtttataccgatgatctcatct 420
Query: 421 cattctctttcgtttctctacagacttgactctcttctaagcattttatcttagttacta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cattctctttcgtttctctacagacttgactctcttctaagcattttatcttagttacta 480
Query: 481 ttagattatttggattttgccaaatgggaatgtaaatggttgggtgacccaattcatgtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttagattatttggattttgccaaatgggaatgtaaatggttgggtgacccaattcatgtt 540
Query: 541 gcacattattggcttttaccctctgctttttcttcctagcttcatctaatgattgcaccc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gcacattattggcttttaccctctgctttttcttcctagcttcatctaatgattgcaccc 600
Query: 601 tatttattt 609
|||||||||
Sbjct: 601 tatttattt 609
>At2g41420.1 68415.m05111 proline-rich family protein contains proline rich
extensin domains, INTERPRO:IPR002965
Length = 765
Score = 79.8 bits (40), Expect = 2e-14
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 314 gaaggatgtattgctgctctgtgctgttgctgtgtcttggacgcttgcttctgagtggag 373
||||||||| ||||||||||||| ||||||||| ||||||| |||||||||||| |||||
Sbjct: 395 gaaggatgtcttgctgctctgtgttgttgctgtctcttggatgcttgcttctgattggag 454
Score = 73.8 bits (37), Expect = 2e-12
Identities = 63/71 (88%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 158 tatcctcagcaaggatatcctcctccgcagggatatcctcaacaaggttatcctcctcaa 217
|||||||||||||| ||||| |||| ||||||||||||||||||||||||||| |||
Sbjct: 260 tatcctcagcaaggctatccacctc---agggatatcctcaacaaggttatcctcagcaa 316
Query: 218 ggttatcctcc 228
|| ||||||||
Sbjct: 317 ggatatcctcc 327
Score = 58.0 bits (29), Expect = 9e-08
Identities = 76/91 (83%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 167 caaggatatcctcctccgcagggatatcctcaacaaggttatcctcctcaaggttatcct 226
|||||||||||||||| ||||||||||||| ||||| ||||| ||||| || ||||||
Sbjct: 239 caaggatatcctcctc---agggatatcctcagcaaggctatccacctcagggatatcct 295
Query: 227 ccgcaggggtaccctgaacaaggatatcctc 257
| || || || ||| | |||||||||||||
Sbjct: 296 caacaaggttatcctcagcaaggatatcctc 326
Score = 42.1 bits (21), Expect = 0.005
Identities = 57/69 (82%)
Strand = Plus / Plus
Query: 199 acaaggttatcctcctcaaggttatcctccgcaggggtaccctgaacaaggatatcctca 258
|||||| ||||||||||| || ||||||| ||| || || || || |||||||||||
Sbjct: 238 acaaggatatcctcctcagggatatcctcagcaaggctatccacctcagggatatcctca 297
Query: 259 acaaggtta 267
|||||||||
Sbjct: 298 acaaggtta 306
Score = 38.2 bits (19), Expect = 0.084
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 208 tcctcctcaaggttatcctccgcaggg 234
|||||||||||||||||| ||| ||||
Sbjct: 187 tcctcctcaaggttatccaccggaggg 213
Score = 36.2 bits (18), Expect = 0.33
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 248 ggatatcctcaacaaggttacccacctcag 277
||||||||||| ||||| || |||||||||
Sbjct: 257 ggatatcctcagcaaggctatccacctcag 286
Score = 34.2 bits (17), Expect = 1.3
Identities = 26/29 (89%)
Strand = Plus / Plus
Query: 83 gttggtgttcctccttctcatgcttatcc 111
||||||||||||||| |||| | ||||||
Sbjct: 176 gttggtgttcctcctcctcaaggttatcc 204
>At5g67600.1 68418.m08524 expressed protein
Length = 515
Score = 54.0 bits (27), Expect = 1e-06
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 305 ggtatgcttgaaggatgtattgctgctctgtgctgttgctgtgtcttggacgcttgcttc 364
|||||||||||||||||| | ||||| || || ||||||||| ||||||| || || |||
Sbjct: 270 ggtatgcttgaaggatgtttggctgcgctctgttgttgctgtctcttggatgcatgtttc 329
Query: 365 tga 367
|||
Sbjct: 330 tga 332
Score = 34.2 bits (17), Expect = 1.3
Identities = 26/29 (89%)
Strand = Plus / Plus
Query: 185 cagggatatcctcaacaaggttatcctcc 213
|||||||| ||| |||||||||||||||
Sbjct: 201 cagggataccctgcacaaggttatcctcc 229
Score = 32.2 bits (16), Expect = 5.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 215 caaggttatcctccgc 230
||||||||||||||||
Sbjct: 216 caaggttatcctccgc 231
>At5g38820.1 68418.m04695 amino acid transporter family protein low similarity
to N system amino acids transporter NAT-1 [Mus musculus]
GI:7406950; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 1371
Score = 38.2 bits (19), Expect = 0.084
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 303 ctggtatgcttgaaggatg 321
|||||||||||||||||||
Sbjct: 443 ctggtatgcttgaaggatg 461
>At4g01210.1 68417.m00159 glycosyltransferase family protein 1 contains Pfam
profile: PF00534 Glycosyl transferases group 1
Length = 3366
Score = 38.2 bits (19), Expect = 0.084
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 275 cagcaacaacagcaacagaaaca 297
|||||||||||||||||| ||||
Sbjct: 484 cagcaacaacagcaacagcaaca 506
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 34,495
Number of Sequences: 29161
Number of extensions: 34495
Number of successful extensions: 3482
Number of sequences better than 10.0: 91
length of query: 610
length of database: 44,058,232
effective HSP length: 17
effective length of query: 593
effective length of database: 43,562,495
effective search space: 25832559535
effective search space used: 25832559535
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)