BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 24267.F
(547 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g06135.1 68414.m00644 expressed protein 1082 0.0
At2g31345.1 68415.m03827 expressed protein 50 2e-05
At5g35220.1 68418.m04176 peptidase M50 family protein / ste... 40 0.019
At5g14260.3 68418.m01668 SET domain-containing protein low ... 40 0.019
At5g14260.2 68418.m01667 SET domain-containing protein low ... 40 0.019
>At1g06135.1 68414.m00644 expressed protein
Length = 546
Score = 1082 bits (546), Expect = 0.0
Identities = 546/546 (100%)
Strand = Plus / Plus
Query: 1 aaaaaaaggcctacactctacaaccaattttacgtgccaatacacacagaaaaacaagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaaaaaggcctacactctacaaccaattttacgtgccaatacacacagaaaaacaagtc 60
Query: 61 agattatttttttctttgaggaagatattgcaagagtacgatcgaggaagatgaagagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agattatttttttctttgaggaagatattgcaagagtacgatcgaggaagatgaagagac 120
Query: 121 aagtaatgatctttgttatgttagttgccttttttgttgtattcttggacgtcaagcaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagtaatgatctttgttatgttagttgccttttttgttgtattcttggacgtcaagcaag 180
Query: 181 ttgaagcaatgaggccgttcccaacagctgccgatgagatccggttcgtgttccaagcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttgaagcaatgaggccgttcccaacagctgccgatgagatccggttcgtgttccaagcac 240
Query: 241 tgcaaaggggtccagtcagcgggtcaggtccaaatggttgcaccaacattccccgtggta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgcaaaggggtccagtcagcgggtcaggtccaaatggttgcaccaacattccccgtggta 300
Query: 301 cacctaggtgccatggttgagtactgaccgggcacttgattcttcttcttgaaacgcaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cacctaggtgccatggttgagtactgaccgggcacttgattcttcttcttgaaacgcaac 360
Query: 361 cagagattcttggattctttattattgtgatatatgtaaatttgtttctactagaaatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cagagattcttggattctttattattgtgatatatgtaaatttgtttctactagaaatca 420
Query: 421 tagccgaaaacaatattaaccttttatactttacaccgcaatgtaaatttgacaaattaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tagccgaaaacaatattaaccttttatactttacaccgcaatgtaaatttgacaaattaa 480
Query: 481 aaaaagatggtgtacccacatatatgttttttcgtcagtaattaataaccattatattat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaaaagatggtgtacccacatatatgttttttcgtcagtaattaataaccattatattat 540
Query: 541 cataat 546
||||||
Sbjct: 541 cataat 546
>At2g31345.1 68415.m03827 expressed protein
Length = 569
Score = 50.1 bits (25), Expect = 2e-05
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 135 gttatgttagttgccttttttgttgtattcttggacgtcaagcaagttgaagcaatgagg 194
||||||||||||| | || ||||| |||||||||| | |||||||||||| ||||||
Sbjct: 120 gttatgttagttgttatgttcgttgttttcttggacgctacgcaagttgaagccatgagg 179
Query: 195 ccgttccca 203
|| ||||||
Sbjct: 180 cctttccca 188
>At5g35220.1 68418.m04176 peptidase M50 family protein / sterol-regulatory
element binding protein (SREBP) site 2 protease family
protein contains PFam PF02163: sterol-regulatory element
binding protein (SREBP) site 2 protease
Length = 1823
Score = 40.1 bits (20), Expect = 0.019
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 107 gaagatgaagagacaagtaa 126
||||||||||||||||||||
Sbjct: 263 gaagatgaagagacaagtaa 282
>At5g14260.3 68418.m01668 SET domain-containing protein low similarity to
ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit N-methyltransferase I [Spinacia oleracea]
GI:3403236; contains Pfam profile PF00856: SET domain
Length = 2067
Score = 40.1 bits (20), Expect = 0.019
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 59 tcagattatttttttctttgagga 82
|||||||||||||||| |||||||
Sbjct: 47 tcagattatttttttcattgagga 24
>At5g14260.2 68418.m01667 SET domain-containing protein low similarity to
ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit N-methyltransferase I [Spinacia oleracea]
GI:3403236; contains Pfam profile PF00856: SET domain
Length = 2017
Score = 40.1 bits (20), Expect = 0.019
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 59 tcagattatttttttctttgagga 82
|||||||||||||||| |||||||
Sbjct: 47 tcagattatttttttcattgagga 24
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,472
Number of Sequences: 29161
Number of extensions: 28472
Number of successful extensions: 2028
Number of sequences better than 10.0: 48
length of query: 547
length of database: 44,058,232
effective HSP length: 17
effective length of query: 530
effective length of database: 43,562,495
effective search space: 23088122350
effective search space used: 23088122350
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)