BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 22839.F
         (497 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53110.1  68418.m06599 expressed protein                       718   0.0  
At3g19570.2  68416.m02482 expressed protein contains Pfam do...    40   0.017
At3g19570.1  68416.m02481 expressed protein contains Pfam do...    40   0.017
At1g10350.1  68414.m01166 DNAJ heat shock protein, putative ...    40   0.017
At3g06790.2  68416.m00807 plastid developmental protein DAG,...    36   0.27 

>At5g53110.1 68418.m06599 expressed protein
          Length = 723

 Score =  718 bits (362), Expect = 0.0
 Identities = 383/390 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   aaagaacgtgaactgacgcatgtaaacgccactaaacggcgtcgagttgaggtttagctc 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 390 aaagaacgtgaactgacgcatgtaaacgccactaaacggcgtcgagttgaggtttagctg 331

                                                                       
Query: 62  taagatccgttgaggaagacagttgtttgggtcgttgatccaaatctcttgagctgcgta 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 taagatccgttgaggaagacagttgtttgggtcgttgatccaaatctcttgagctgcgta 271

                                                                       
Query: 122 atcgatctcttccacggtgaagttaccggaaaacggtaacgttatggttgttctgttacc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atcgatctcttccacggtgaagttaccggaaaacggtaacgttatggttgttctgttacc 211

                                                                       
Query: 182 ggcgttgatatcgcacgttaagtcgaagcctttgtcgtatccacaagaatgagattgttg 241
           |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 210 ggcgttaatatcgcacgttaagtcgaagcctttgtcgtaaccacaagaatgagattgttg 151

                                                                       
Query: 242 acgttttagacggaacggaaaacggatgatcgggccgtcacggcgacaaacggcgttagt 301
             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 gtgttttagacggaatggaaaacggatgatcgggccgtcacggcgacaaacggcgttagt 91

                                                                       
Query: 302 gcatgtaacggtggaagtggtcgtcgtcgtcgtcgggattagaagagatagaaacaagag 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  gcatgtaacggtggaagtggtcgtcgtcgtcgtcgggattagaagagatagaaacaagag 31

                                         
Query: 362 agagaatgatattatttttgttaaatccat 391
           |||||||||||||| |||||||||||||||
Sbjct: 30  agagaatgatattaattttgttaaatccat 1



>At3g19570.2 68416.m02482 expressed protein contains Pfam domain, PF04484:
           Family of unknown function (DUF566)
          Length = 2616

 Score = 40.1 bits (20), Expect = 0.017
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 317 agtggtcgtcgtcgtcgtcg 336
           ||||||||||||||||||||
Sbjct: 491 agtggtcgtcgtcgtcgtcg 472



>At3g19570.1 68416.m02481 expressed protein contains Pfam domain, PF04484:
           Family of unknown function (DUF566)
          Length = 2514

 Score = 40.1 bits (20), Expect = 0.017
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 317 agtggtcgtcgtcgtcgtcg 336
           ||||||||||||||||||||
Sbjct: 407 agtggtcgtcgtcgtcgtcg 388



>At1g10350.1 68414.m01166 DNAJ heat shock protein, putative similar to SP|Q9QYJ3
           DnaJ homolog subfamily B member 1 (Heat shock 40 kDa
           protein 1) {Mus musculus}; contains Pfam profile
           PF00226: DnaJ domain
          Length = 1433

 Score = 40.1 bits (20), Expect = 0.017
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 391 tttttttgtttggtttggtg 410
           ||||||||||||||||||||
Sbjct: 161 tttttttgtttggtttggtg 180



>At3g06790.2 68416.m00807 plastid developmental protein DAG, putative similar to
            DAG protein, chloroplast precursor [Garden snapdragon]
            SWISS-PROT:Q38732
          Length = 1844

 Score = 36.2 bits (18), Expect = 0.27
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 320  ggtcgtcgtcgtcgtcgg 337
            ||||||||||||||||||
Sbjct: 1730 ggtcgtcgtcgtcgtcgg 1713



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,372
Number of Sequences: 29161
Number of extensions: 17372
Number of successful extensions: 1596
Number of sequences better than 10.0: 61
length of query: 497
length of database: 44,058,232
effective HSP length: 17
effective length of query: 480
effective length of database: 43,562,495
effective search space: 20909997600
effective search space used: 20909997600
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)