BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2187.F
(687 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g34555.1 68415.m04244 gibberellin 2-oxidase / GA2-oxidas... 1013 0.0
At1g30040.1 68414.m03673 gibberellin 2-oxidase / GA2-oxidas... 66 4e-10
At1g47990.1 68414.m05345 gibberellin 2-oxidase, putative / ... 46 4e-04
At5g22520.1 68418.m02628 expressed protein 40 0.024
At1g11670.1 68414.m01340 MATE efflux family protein similar... 40 0.024
>At2g34555.1 68415.m04244 gibberellin 2-oxidase / GA2-oxidase (GA2OX3) identical
to ga2ox3 [GI:4678370]
Length = 1137
Score = 1013 bits (511), Expect = 0.0
Identities = 514/515 (99%)
Strand = Plus / Minus
Query: 108 ctgaaaattgcaggggtgtgccggaaaatggcggtggttttgtgagactcaaggcaaaga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ctgaaaattgcaggggtgtgccggaaaatggcggtggttttgtgagactcaaggcaaaga 456
Query: 168 ttagcattaaggagaatgtactcaagccagccaaggtcaccattgggtccaatcctttta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttagcattaaggagaatgtactcaagccagccaaggtcaccattgggtccaatcctttta 396
Query: 228 gtaccgtaaccaaacgggtcaggtggacccgctttgtctttgagagagtgatgcaaagca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gtaccgtaaccaaacgggtcaggtggacccgctttgtctttgagagagtgatgcaaagca 336
Query: 288 aagaagttgatggcttcttgctccaactgagtcaaaagatcgggtcggaccccatggttg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aagaagttgatggcttcttgctccaactgagtcaaaagatcgggtcggaccccatggttg 276
Query: 348 atgactttgaagaacccaaactcttcacatgccttgatgatttgggttttggcatctgag 407
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 275 atgactttgaagaacccaaactcttcacatgccttgacgatttgggttttggcatctgag 216
Query: 408 tcggttaagtctataacagggattaaaaccggacgcggtttgcattttggattaacatag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 tcggttaagtctataacagggattaaaaccggacgcggtttgcattttggattaacatag 156
Query: 468 aggttgctatcaaaactggctggctgtaacacaattaccatggtctactcttttggtctt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aggttgctatcaaaactggctggctgtaacacaattaccatggtctactcttttggtctt 96
Query: 528 ttaaacaagaactttgaaaaataaagattgttgaaaagagagtgaatttggtgaaaaggg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ttaaacaagaactttgaaaaataaagattgttgaaaagagagtgaatttggtgaaaaggg 36
Query: 588 tgttttcttagcactaatttatagtcgcttgttct 622
|||||||||||||||||||||||||||||||||||
Sbjct: 35 tgttttcttagcactaatttatagtcgcttgttct 1
>At1g30040.1 68414.m03673 gibberellin 2-oxidase / GA2-oxidase (GA2OX2) identical
to GI:4678368 ga2ox2
Length = 1408
Score = 65.9 bits (33), Expect = 4e-10
Identities = 162/205 (79%)
Strand = Plus / Minus
Query: 166 gattagcattaaggagaatgtactcaagccagccaaggtcaccattgggtccaatccttt 225
|||||||||| ||||| | ||||||| ||| |||| |||||| || |||||||||| ||
Sbjct: 476 gattagcattgaggaggagatactcaatccaaccaacgtcaccgtttggtccaatccgtt 417
Query: 226 tagtaccgtaaccaaacgggtcaggtggacccgctttgtctttgagagagtgatgcaaag 285
|| |||| ||||| |||| ||||||||||| || || ||| ||||| ||| ||||
Sbjct: 416 tattaccataaccgtacggttcaggtggaccggcccggtttttaagagactgaggcaagc 357
Query: 286 caaagaagttgatggcttcttgctccaactgagtcaaaagatcgggtcggaccccatggt 345
| |||||| || || || ||||| ||| |||||| || ||||||||||| || ||||
Sbjct: 356 cgaagaagccaatagcctcctgctctaaccgagtcatgagttcgggtcggactccgtggt 297
Query: 346 tgatgactttgaagaacccaaactc 370
| | ||| ||||||||||| |||||
Sbjct: 296 ttacgaccttgaagaacccgaactc 272
>At1g47990.1 68414.m05345 gibberellin 2-oxidase, putative / GA2-oxidase,
putative similar to GA2ox1 [GI:4678366]; similar to
dioxygenase GB:CAA70330 GI:1666096 from [Marah
macrocarpus]; contains PF03171 2OG-Fe(II) oxygenase
superfamily domain
Length = 966
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 339 ccatggttgatgactttgaagaa 361
|||||||||||||||||||||||
Sbjct: 140 ccatggttgatgactttgaagaa 118
>At5g22520.1 68418.m02628 expressed protein
Length = 598
Score = 40.1 bits (20), Expect = 0.024
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 650 ttatcacatttttttttaat 669
||||||||||||||||||||
Sbjct: 459 ttatcacatttttttttaat 478
>At1g11670.1 68414.m01340 MATE efflux family protein similar to ripening regulated
protein DDTFR18 [Lycopersicon esculentum] GI:12231296;
contains Pfam profile PF01554: Uncharacterized membrane
protein family; EST gb|W43487 comes from this gene
Length = 1944
Score = 40.1 bits (20), Expect = 0.024
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 624 tgttgtattgtatggaagag 643
||||||||||||||||||||
Sbjct: 1880 tgttgtattgtatggaagag 1899
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,580
Number of Sequences: 29161
Number of extensions: 27580
Number of successful extensions: 694
Number of sequences better than 10.0: 77
length of query: 687
length of database: 44,058,232
effective HSP length: 17
effective length of query: 670
effective length of database: 43,562,495
effective search space: 29186871650
effective search space used: 29186871650
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)