BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1860.F
(711 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61667.1 68414.m06953 expressed protein contains Pfam pr... 1318 0.0
At4g26290.1 68417.m03782 expressed protein 54 2e-06
At1g02880.3 68414.m00255 thiamin pyrophosphokinase, putativ... 54 2e-06
At1g02880.1 68414.m00253 thiamin pyrophosphokinase, putativ... 54 2e-06
At5g62500.1 68418.m07844 microtubule-associated EB1 family ... 52 7e-06
>At1g61667.1 68414.m06953 expressed protein contains Pfam profile PF04398:
Protein of unknown function, DUF538
Length = 708
Score = 1318 bits (665), Expect = 0.0
Identities = 700/711 (98%), Gaps = 3/711 (0%)
Strand = Plus / Plus
Query: 1 aaaaagaaaatatgtctatgcttcttcttcttcttcttcttcttgtcccattcattactc 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 aaaaagaaaatatgtctatgcttcttct---tcttcttcttcttgtcccattcattactc 57
Query: 61 catcttcgcaatcttccattcgaaacctcctcgaagctcgcggtttaccaggtggtttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 catcttcgcaatcttccattcgaaacctcctcgaagctcgcggtttaccaggtggtttgt 117
Query: 121 ttccagacaacgtggagagttatagtctagatgataagacaggagagctcgaagttcagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 ttccagacaacgtggagagttatagtctagatgataagacaggagagctcgaagttcagc 177
Query: 181 tacagaatccttgttttgctcggttcgaaaatagagtatattttgatcgtgtgattaaag 240
|||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 178 tacaaaatccttgtttcgctcggttcgaaaacagagtatattttgatcgtgtgattaaag 237
Query: 241 caaatctaagctatggtgggcttgttggacttgaaggtttaacacaagaagagctttttc 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 caaatttaagctatggtgggcttgttggacttgaaggtttaacacaagaagagctttttc 297
Query: 301 tttggttacctgttaaaggcattgcagtgaatgatccttcttctggacttgttctcttcg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tttggttacctgttaaaggcattgcagtgaatgatccttcttctggacttgttctcttcg 357
Query: 361 atatcggtgttgctcataaacaaatctctcgttctctttttgaagatcctcctgtttgtt 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 358 atatcggtgttgctcataaacaaatctctcgttctctctttgaagatcctcctgtttgtt 417
Query: 421 atcctcctggatctataatggagaagttagaaaaaagcaagatggatattcagctcaaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 atcctcctggatctataatggagaagttagaaaaaagcaagatggatattcagctcaaga 477
Query: 481 gatgaatgagtttatttttttttggggttgtgtaagattcaaaactcaaacttgtctctt 540
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gatgaatgagtttttttttttttggggttgtgtaagattcaaaactcaaacttgtctctt 537
Query: 541 tgaaacttgaacaaaaaatgtgtttttttctttcttcttttacctttttgtttggggttg 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 538 tgaaacttgaacaaaaaatgtgtttttttctttcttcttttacctttttgttcggggttg 597
Query: 601 tttgggaaaccgtggaaagtgtcgagagatatgtgtaaaatctggaaagaagggaggaaa 660
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 598 tttgggaaaccgtggaaagtgtcgggagatatgtgtaaaatctggaaagaagggaggaaa 657
Query: 661 attttggaactttgtataaattatggggtccataaagtaatcaattttgtc 711
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 attttggaactttgtataaattatggggtccataaagtaatcaattttgtc 708
>At4g26290.1 68417.m03782 expressed protein
Length = 228
Score = 54.0 bits (27), Expect = 2e-06
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 18 atgcttcttcttcttcttcttcttctt 44
|||||||||||||||||||||||||||
Sbjct: 70 atgcttcttcttcttcttcttcttctt 44
Score = 48.1 bits (24), Expect = 1e-04
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 21 cttcttcttcttcttcttcttctt 44
||||||||||||||||||||||||
Sbjct: 61 cttcttcttcttcttcttcttctt 38
Score = 48.1 bits (24), Expect = 1e-04
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 21 cttcttcttcttcttcttcttctt 44
||||||||||||||||||||||||
Sbjct: 58 cttcttcttcttcttcttcttctt 35
Score = 48.1 bits (24), Expect = 1e-04
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 21 cttcttcttcttcttcttcttctt 44
||||||||||||||||||||||||
Sbjct: 64 cttcttcttcttcttcttcttctt 41
Score = 44.1 bits (22), Expect = 0.002
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 cttcttcttcttcttcttcttc 42
||||||||||||||||||||||
Sbjct: 55 cttcttcttcttcttcttcttc 34
>At1g02880.3 68414.m00255 thiamin pyrophosphokinase, putative similar to
thiamin pyrophosphokinase [Mus musculus]
gi|6468206|dbj|BAA87040
Length = 1169
Score = 54.0 bits (27), Expect = 2e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 21 cttcttcttcttcttcttcttcttgtc 47
|||||||||||||||||||||||||||
Sbjct: 24 cttcttcttcttcttcttcttcttgtc 50
>At1g02880.1 68414.m00253 thiamin pyrophosphokinase, putative similar to
thiamin pyrophosphokinase [Mus musculus]
gi|6468206|dbj|BAA87040
Length = 1361
Score = 54.0 bits (27), Expect = 2e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 21 cttcttcttcttcttcttcttcttgtc 47
|||||||||||||||||||||||||||
Sbjct: 6 cttcttcttcttcttcttcttcttgtc 32
>At5g62500.1 68418.m07844 microtubule-associated EB1 family protein similar to
EBF3-S (Microtubule-associated protein) [Homo sapiens]
GI:12751131; contains Pfam profiles PF00307: Calponin
homology (CH) domain, PF03271: EB1 protein
Length = 1408
Score = 52.0 bits (26), Expect = 7e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 19 tgcttcttcttcttcttcttcttctt 44
||||||||||||||||||||||||||
Sbjct: 1143 tgcttcttcttcttcttcttcttctt 1118
Score = 48.1 bits (24), Expect = 1e-04
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 21 cttcttcttcttcttcttcttctt 44
||||||||||||||||||||||||
Sbjct: 1138 cttcttcttcttcttcttcttctt 1115
Score = 48.1 bits (24), Expect = 1e-04
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 21 cttcttcttcttcttcttcttctt 44
||||||||||||||||||||||||
Sbjct: 1135 cttcttcttcttcttcttcttctt 1112
Score = 44.1 bits (22), Expect = 0.002
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 19 tgcttcttcttcttcttcttcttctt 44
|||| |||||||||||||||||||||
Sbjct: 1146 tgctgcttcttcttcttcttcttctt 1121
Score = 44.1 bits (22), Expect = 0.002
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 cttcttcttcttcttcttcttc 42
||||||||||||||||||||||
Sbjct: 1132 cttcttcttcttcttcttcttc 1111
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 72,496
Number of Sequences: 29161
Number of extensions: 72496
Number of successful extensions: 14341
Number of sequences better than 10.0: 1838
length of query: 711
length of database: 44,058,232
effective HSP length: 17
effective length of query: 694
effective length of database: 43,562,495
effective search space: 30232371530
effective search space used: 30232371530
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)