BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 157709.F
(623 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59510.1 68418.m07458 expressed protein 1219 0.0
At3g02880.1 68416.m00282 leucine-rich repeat transmembrane ... 42 0.006
At2g29125.1 68415.m03540 expressed protein 42 0.006
At2g26930.1 68415.m03230 4-diphosphocytidyl-2-C-methyl-D-er... 42 0.006
At2g22620.1 68415.m02681 expressed protein 42 0.006
>At5g59510.1 68418.m07458 expressed protein
Length = 623
Score = 1219 bits (615), Expect = 0.0
Identities = 621/623 (99%)
Strand = Plus / Plus
Query: 1 atccactcttgattcatggatgatgaaaacttgtggaaagttgtgaagaaagattccatc 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 atccactcttgattcatggatgatgaaaatttgtggaaagttgtgaagaaagattccatc 60
Query: 61 ttcgaaacgactcatttctcttcaaaacctgttttcacacgaagcttctcaacaaaaact 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 61 ttcgaaacgactcatttctcttcaaaacctgtttttacacgaagcttctcaacaaaaact 120
Query: 121 tcttcttcttcttcaaaacccgttttcacaagaagtttctcaactaaacccacttcgtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcttcttcttcttcaaaacccgttttcacaagaagtttctcaactaaacccacttcgtat 180
Query: 181 tcttcatcagagcccatctttagacggagtttctctgcaaaacccacttcttcgaaatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcttcatcagagcccatctttagacggagtttctctgcaaaacccacttcttcgaaatct 240
Query: 241 ccgtttctatctagaagcggttccacgaaatgccctgttgatacatcttctacttccaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccgtttctatctagaagcggttccacgaaatgccctgttgatacatcttctacttccaag 300
Query: 301 tgttccatctctcggagcttgtctcagaaaggagcttcggtgacccgaaagtgtcgtaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgttccatctctcggagcttgtctcagaaaggagcttcggtgacccgaaagtgtcgtaat 360
Query: 361 atggccaaggaacacaagtctcggttttacatcatgaaacgttgcgttctgatgctcgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atggccaaggaacacaagtctcggttttacatcatgaaacgttgcgttctgatgctcgtt 420
Query: 421 tgttggcacaaacatgcctgtgattcgtgaagaaagatgcataattaggttatttaatta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgttggcacaaacatgcctgtgattcgtgaagaaagatgcataattaggttatttaatta 480
Query: 481 cagattcactctttttttcttatttttttacccatctgttaatttttttccttaagtttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cagattcactctttttttcttatttttttacccatctgttaatttttttccttaagtttt 540
Query: 541 ctgtattaatgatatactccctccatctcttaaattaaatgtatttttgttttatttatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctgtattaatgatatactccctccatctcttaaattaaatgtatttttgttttatttatt 600
Query: 601 tattttacaaagtgatgttttac 623
|||||||||||||||||||||||
Sbjct: 601 tattttacaaagtgatgttttac 623
>At3g02880.1 68416.m00282 leucine-rich repeat transmembrane protein kinase,
putative contains Pfam profiles: PF00069 Eukaryotic
protein kinase domain, PF00560 Leucine Rich Repeat (5
copies)
Length = 2350
Score = 42.1 bits (21), Expect = 0.006
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 119 cttcttcttcttcttcaaaacccgt 143
|||||||||||||||||||| ||||
Sbjct: 166 cttcttcttcttcttcaaaaaccgt 142
>At2g29125.1 68415.m03540 expressed protein
Length = 768
Score = 42.1 bits (21), Expect = 0.006
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 412 atgctcgtttgttggcacaaacatg 436
||||| |||||||||||||||||||
Sbjct: 443 atgcttgtttgttggcacaaacatg 467
>At2g26930.1 68415.m03230 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
(CMK) (CDPMEK) identical to
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase,
chloroplast precursor (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl- D-erythritol
kinase)(CDPMEK) [Arabidopsis thaliana] SWISS-PROT:O81014
Length = 1777
Score = 42.1 bits (21), Expect = 0.006
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 115 aaaacttcttcttcttcttca 135
|||||||||||||||||||||
Sbjct: 75 aaaacttcttcttcttcttca 95
>At2g22620.1 68415.m02681 expressed protein
Length = 2415
Score = 42.1 bits (21), Expect = 0.006
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 117 aacttcttcttcttcttcaaa 137
|||||||||||||||||||||
Sbjct: 342 aacttcttcttcttcttcaaa 362
Score = 32.2 bits (16), Expect = 5.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 119 cttcttcttcttcttc 134
||||||||||||||||
Sbjct: 138 cttcttcttcttcttc 153
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 49,001
Number of Sequences: 29161
Number of extensions: 49001
Number of successful extensions: 11226
Number of sequences better than 10.0: 1302
length of query: 623
length of database: 44,058,232
effective HSP length: 17
effective length of query: 606
effective length of database: 43,562,495
effective search space: 26398871970
effective search space used: 26398871970
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)