BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 150178.F
         (496 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM67303.1|  unknown [Arabidopsis thaliana]                     70   2e-11
emb|CAB07574.2|  C. elegans SRD-63 protein (corresponding se...    32   6.8  
gb|AAR91099.1|  hypothetical protein [Zea mays]                    31   8.9  

>gb|AAM67303.1| unknown [Arabidopsis thaliana]
          Length = 49

 Score = 69.7 bits (169), Expect = 2e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +1

Query: 109 VSLFQLFLSSPLHHGCTFERVTISRRRRFLGH 204
           VSLFQLFLSSPLHHGCTFERVTISRRRRFLGH
Sbjct: 18  VSLFQLFLSSPLHHGCTFERVTISRRRRFLGH 49



>emb|CAB07574.2| C. elegans SRD-63 protein (corresponding sequence F13A7.2)
           [Caenorhabditis elegans]
          Length = 321

 Score = 31.6 bits (70), Expect = 6.8
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = +3

Query: 153 LYFRTC--DYLTEKKIS-WTLVFHWHY 224
           +Y+RT    YL  KK+  WTLVF WHY
Sbjct: 111 MYYRTLCLKYLDAKKVRLWTLVFMWHY 137



>gb|AAR91099.1| hypothetical protein [Zea mays]
          Length = 134

 Score = 31.2 bits (69), Expect = 8.9
 Identities = 16/48 (33%), Positives = 27/48 (55%)
 Frame = -2

Query: 345 ISLARSRKIF*IIEEFSDLVETKLFFVFFCFHRGKKKLSEDNANGTLM 202
           +S   S K+  ++E+   +  T+ F +F+CF R KKK   DN+   L+
Sbjct: 57  VSAFPSDKVCEVVEKMKLIHTTEFFLLFYCFFRRKKK---DNSKHVLL 101



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 116
effective length of database: 409,858,350
effective search space used: 19673200800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)