BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1349.F
(754 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g17455.1 68414.m02138 expressed protein 1450 0.0
At1g72630.1 68414.m08398 expressed protein 248 4e-65
At3g53090.1 68416.m05851 HECT-domain-containing protein / u... 38 0.10
At3g26125.1 68416.m03258 cytochrome P450, putative 36 0.40
At3g09260.1 68416.m01100 glycosyl hydrolase family 1 protei... 36 0.40
>At1g17455.1 68414.m02138 expressed protein
Length = 810
Score = 1450 bits (730), Expect = 0.0
Identities = 747/753 (99%), Gaps = 2/753 (0%)
Strand = Plus / Plus
Query: 2 atctgtgtctcaaaagacaagtagattccttttttttacagtatccaataatttgtaatc 61
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 atctctgtctcaaaagacaagtagattccttttttttacagtatccaataatttgtaatc 118
Query: 62 atataaataatcggtgaaaaagaaggattctttgtttgtttcccgagaaaatatcctcga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 atataaataatcggtgaaaaagaaggattctttgtttgtttcccgagaaaatatcctcga 178
Query: 122 tttccatctcctatctgtcatcggagctttctacttccgaakgaataaaggatcaatcaa 181
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 179 tttccatctcctatctgtcatcggagctttctacttccgaaggagtaaaggatcaatcaa 238
Query: 182 gagtttgatcttgttagaatagccgataatggaaggagatgtgttgtcaggatttggaga 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gagtttgatcttgttagaatagccgataatggaaggagatgtgttgtcaggatttggaga 298
Query: 242 cagacacaatatggatgggaaattgttgcagagtttccagaagagctttgtggatgttca 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cagacacaatatggatgggaaattgttgcagagtttccagaagagctttgtggatgttca 358
Query: 302 agacattttggaccaaaaccgattattgatcaacgagatcaatcagdaccatgaatcgaa 361
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 359 agacattttggaccaaaaccgattattgatcaacgagatcaatcagaaccatgaatcgaa 418
Query: 362 acaaccagataacttgggtcgaaacgtggggttgatcaaagagctcaacaacaatatcag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 acaaccagataacttgggtcgaaacgtggggttgatcaaagagctcaacaacaatatcag 478
Query: 422 aagagtagctagcctttatggtgatctctctcattcttttgcaagatcagtggatgcttc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aagagtagctagcctttatggtgatctctctcattcttttgcaagatcagtggatgcttc 538
Query: 482 atcagaaggtgaatctagtggaactttgaaatctgatgggaaagctaaccagaagagatt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 atcagaaggtgaatctagtggaactttgaaatctgatgggaaagctaaccagaagagatt 598
Query: 542 tagatccggttagtattgtaaccaagaggtccaagaccatcaaagttgattatcatagat 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tagatccggttagtattgtaaccaagaggtccaagaccatcaaagttgattatcatagat 658
Query: 602 tcatattcagattcagagctaattgattgaggagaaaggagaaaggagagttttacaaat 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tcatattcagattcagagctaattgattgaggagaaaggagaaaggagagttttacaaat 718
Query: 662 gtaatatctctattgaaatgattaagagagtctttacaagaaacttgttgtaaagtttac 721
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 719 gtaatatctctattgaaatgatta--agagtctttacaagaaacttgttgtaaagtttac 776
Query: 722 acatttcggtttaaggattcttctgtttttctt 754
|||||||||||||||||||||||||||||||||
Sbjct: 777 acatttcggtttaaggattcttctgtttttctt 809
>At1g72630.1 68414.m08398 expressed protein
Length = 896
Score = 248 bits (125), Expect = 4e-65
Identities = 290/345 (84%), Gaps = 3/345 (0%)
Strand = Plus / Plus
Query: 209 aatggaaggagatgtgttgtcaggatttggagacagacacaatatggatgggaaattgtt 268
||||||||||||||||| || ||||||||||| ||| || | |||||||| || |||||
Sbjct: 319 aatggaaggagatgtgtattctggatttggagagagataccaaatggatggtaagttgtt 378
Query: 269 gcagagtttccagaagagctttgtggatgttcaagacattttggaccaaaaccgattatt 328
||||| |||||||||||||||||| | |||||||||||| | || || ||||| | ||
Sbjct: 379 gcagaatttccagaagagctttgttcaagttcaagacattcttgatcagaaccggctttt 438
Query: 329 gatcaacgagatcaatcagdaccatgaatcgaaacaaccagataacttgggtcgaaacgt 388
||||||||||||||||||| ||||||| ||||||||| | ||| ||||||| |||| ||
Sbjct: 439 gatcaacgagatcaatcagaaccatgagtcgaaacaagctgatcacttgggaagaaatgt 498
Query: 389 ggggttgatcaaagagctcaacaacaatatcagaagagtagctagcctttatggtgatct 448
|| ||||| | ||||||||| ||||||||||||| || || || |||||||| |||||
Sbjct: 499 tggtttgataagagagctcaataacaatatcagaactgttgcaagtctttatggagatct 558
Query: 449 ctctcattcttttgcaagatcagtggatgcttcatcagaaggtgaatctagtggaacttt 508
||||||||||||||| ||||| || ||||||||||| ||||| ||||||| || || ||
Sbjct: 559 ctctcattcttttgctagatcggttgatgcttcatcggaaggcgaatctaccgggacatt 618
Query: 509 gaaatctgatgggaaagc---taaccagaagagatttagatccgg 550
||||||||| || || || |||||||||||||||||||||||
Sbjct: 619 gaaatctgacggtaaggccaacaaccagaagagatttagatccgg 663
Score = 36.2 bits (18), Expect = 0.40
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 17 gacaagtagattcctttt 34
||||||||||||||||||
Sbjct: 142 gacaagtagattcctttt 159
>At3g53090.1 68416.m05851 HECT-domain-containing protein / ubiquitin-transferase
family protein / IQ calmodulin-binding motif-containing
protein contains Pfam profiles PF00632: HECT-domain
(ubiquitin-transferase), PF00612: IQ calmodulin-binding
motif
Length = 3685
Score = 38.2 bits (19), Expect = 0.10
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 585 agttgattatcatagattcatat 607
|||||||||||||| ||||||||
Sbjct: 3679 agttgattatcatatattcatat 3657
>At3g26125.1 68416.m03258 cytochrome P450, putative
Length = 1626
Score = 36.2 bits (18), Expect = 0.40
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 643 aaaggagagttttacaaa 660
||||||||||||||||||
Sbjct: 340 aaaggagagttttacaaa 357
>At3g09260.1 68416.m01100 glycosyl hydrolase family 1 protein contains Pfam
PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM
TIGR01233: 6-phospho-beta-galactosidase; almost
identical to beta-glucosidase GI:1732570 from
[Arabidopsis thaliana]; similar to beta-glucosidase 1
(GI:12043529) [Arabidopsis thaliana]
Length = 1800
Score = 36.2 bits (18), Expect = 0.40
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 632 ggagaaaggagaaaggag 649
||||||||||||||||||
Sbjct: 416 ggagaaaggagaaaggag 433
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 31,371
Number of Sequences: 29161
Number of extensions: 31371
Number of successful extensions: 790
Number of sequences better than 10.0: 66
length of query: 754
length of database: 44,058,232
effective HSP length: 17
effective length of query: 737
effective length of database: 43,562,495
effective search space: 32105558815
effective search space used: 32105558815
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 16 (32.3 bits)