BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 126096.F
(460 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g79610.1 68414.m09282 sodium proton exchanger, putative ... 609 e-174
At1g54370.1 68414.m06199 sodium proton exchanger, putative ... 66 3e-10
At3g03020.1 68416.m00297 expressed protein 42 0.004
At2g25290.1 68415.m03025 octicosapeptide/Phox/Bem1p (PB1) d... 42 0.004
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearl... 42 0.004
>At1g79610.1 68414.m09282 sodium proton exchanger, putative (NHX6) identical to
Na+/H+ exchanger 6 [Arabidopsis thaliana]
gi|19919848|gb|AAM08407 (Plant J. (2002) In press);
contains similarity to Na+/H+ antiporter GI:1655701 from
[Xenopus laevis]; contains non-consensus AT/AC splice
sites; Member of The Monovalent Cation:Proton Antiporter
(CPA1) Family, PMID:11500563
Length = 1873
Score = 609 bits (307), Expect = e-174
Identities = 307/307 (100%)
Strand = Plus / Minus
Query: 36 ccaattagaagagaagcactagcttcaggtagataatagaacttatgacggcgaaggaca 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ccaattagaagagaagcactagcttcaggtagataatagaacttatgacggcgaaggaca 248
Query: 96 tgaccgagtacaaaagagaggacaagcatcatgatctgaagcaaaatcccgactccggcg 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgaccgagtacaaaagagaggacaagcatcatgatctgaagcaaaatcccgactccggcg 188
Query: 156 gcttgctgctgcttctcttgaccttgcgggtcgtgaatcgccggcgaaatctgcagctcc 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 gcttgctgctgcttctcttgaccttgcgggtcgtgaatcgccggcgaaatctgcagctcc 128
Query: 216 gacgacattacgcctcgacggatttaaaaaaaaaactagggtttctatcagtgttacttc 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gacgacattacgcctcgacggatttaaaaaaaaaactagggtttctatcagtgttacttc 68
Query: 276 gtcttcttcgtctttgttcacacagagagagagaaattcacgaaacgggaactcgtgaga 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 gtcttcttcgtctttgttcacacagagagagagaaattcacgaaacgggaactcgtgaga 8
Query: 336 tagactt 342
|||||||
Sbjct: 7 tagactt 1
>At1g54370.1 68414.m06199 sodium proton exchanger, putative (NHX5) contains
similarity to Na+/H+ antiporter GI:1655701 from [Xenopus
laevis]; Member of The Monovalent Cation:Proton
Antiporter (CPA1) Family, PMID:11500563; contains
non-consensus AT-AC splice sites at introns 3 and 10
Length = 1768
Score = 65.9 bits (33), Expect = 3e-10
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 33 aaaccaattagaagagaagcactagcttcaggtagataatagaacttatgacggcgaagg 92
|||||||| ||||| ||| | || |||||||| ||||| | ||| ||||||||| |||
Sbjct: 188 aaaccaatgagaagcgaaccgctggcttcaggaagatagtggaatcgatgacggcggagg 129
Query: 93 acatgaccgagtacaaaagagaggacaagcatcatgatctgaagcaaaatcccgactccg 152
||||| ||||| || || || || || |||||||| |||||||||| || || || |||
Sbjct: 128 acatggccgagaacgaaggaaagcacgagcatcataatctgaagcagtataccaacgccg 69
Query: 153 gcggcttgctgctgctt 169
|| ||||||||||||||
Sbjct: 68 gccgcttgctgctgctt 52
>At3g03020.1 68416.m00297 expressed protein
Length = 978
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 340 cttcttcttcttcttcctttc 360
|||||||||||||||||||||
Sbjct: 142 cttcttcttcttcttcctttc 162
>At2g25290.1 68415.m03025 octicosapeptide/Phox/Bem1p (PB1) domain-containing
protein / tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|Q99614 Tetratricopeptide
repeat protein 1 {Homo sapiens}; contains Pfam profiles
PF00564: PB1 domain, PF00515: TPR Domain
Length = 2094
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 338 gacttcttcttcttcttcctt 358
|||||||||||||||||||||
Sbjct: 638 gacttcttcttcttcttcctt 618
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly identical to
SP|P11139 Tubulin alpha-1 chain {Arabidopsis thaliana}
Length = 1650
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 337 agacttcttcttcttcttcct 357
|||||||||||||||||||||
Sbjct: 89 agacttcttcttcttcttcct 69
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 48,607
Number of Sequences: 29161
Number of extensions: 48607
Number of successful extensions: 11870
Number of sequences better than 10.0: 1422
length of query: 460
length of database: 44,058,232
effective HSP length: 17
effective length of query: 443
effective length of database: 43,562,495
effective search space: 19298185285
effective search space used: 19298185285
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)