BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 116789.F
(786 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g16705.1 68414.m02001 p300/CBP acetyltransferase-related... 1554 0.0
At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related... 94 2e-18
At1g16710.1 68414.m02003 TAZ zinc finger family protein / z... 92 8e-18
At1g79010.1 68414.m09213 NADH-ubiquinone oxidoreductase 23 ... 50 3e-05
At1g16700.1 68414.m02000 NADH-ubiquinone oxidoreductase 23 ... 44 0.002
>At1g16705.1 68414.m02001 p300/CBP acetyltransferase-related protein-related
similar to p300/CBP acetyltransferase-related protein 2
[Arabidopsis thaliana] GI:12597461
Length = 784
Score = 1554 bits (784), Expect = 0.0
Identities = 784/784 (100%)
Strand = Plus / Plus
Query: 2 ctatttggaatttcgtcttaaattcgctttctcatcttcttttacttctcggtttcaaga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctatttggaatttcgtcttaaattcgctttctcatcttcttttacttctcggtttcaaga 60
Query: 62 tctctttcagagatttctcattttacttatcctcctggcttgcgtgagtttagacgtgcg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctctttcagagatttctcattttacttatcctcctggcttgcgtgagtttagacgtgcg 120
Query: 122 acattgtttcttcatcgtaatcatagggatttcacgttacacttgctcccatggacaatg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acattgtttcttcatcgtaatcatagggatttcacgttacacttgctcccatggacaatg 180
Query: 182 atgttttccagattcgccggtccatgcgagacgctatcttcgtccagttagagaagcgaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atgttttccagattcgccggtccatgcgagacgctatcttcgtccagttagagaagcgaa 240
Query: 242 acccacttccgaatgatgatgcatcaaaggggaagcatttagatgctgctaaacgcttag 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acccacttccgaatgatgatgcatcaaaggggaagcatttagatgctgctaaacgcttag 300
Query: 302 aggaaggactttttaaaatggctatgacaaaggaggaatacttgaacccgtcaactcttg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aggaaggactttttaaaatggctatgacaaaggaggaatacttgaacccgtcaactcttg 360
Query: 362 aatctcgcttgacaagcttaataaaaggcaggcaattgaataagtacaagcaccaacatg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aatctcgcttgacaagcttaataaaaggcaggcaattgaataagtacaagcaccaacatg 420
Query: 422 ctgattcttctacgcttggaacaaccataacacctactccaggagtctctgctgaaccca 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctgattcttctacgcttggaacaaccataacacctactccaggagtctctgctgaaccca 480
Query: 482 caatggataatgagaacagagatcagtgcgagacagagattgctgagaatctgaagtcag 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 caatggataatgagaacagagatcagtgcgagacagagattgctgagaatctgaagtcag 540
Query: 542 tgagccttgagccatgaagattatcagaaagttctttttacgacttgtttggaaacgttt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgagccttgagccatgaagattatcagaaagttctttttacgacttgtttggaaacgttt 600
Query: 602 tcattgcttatgttacaaggaaaagatgataacatatacaatactaacgcttctgccttc 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tcattgcttatgttacaaggaaaagatgataacatatacaatactaacgcttctgccttc 660
Query: 662 tccattgctactgtattgctaattgtaagatctaaagtaggaatggtaaaaccggttatg 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tccattgctactgtattgctaattgtaagatctaaagtaggaatggtaaaaccggttatg 720
Query: 722 atttgtttccggttagacttggaacatgtatgaatttgaatggtttattattagttactc 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 atttgtttccggttagacttggaacatgtatgaatttgaatggtttattattagttactc 780
Query: 782 ttgg 785
||||
Sbjct: 781 ttgg 784
>At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related protein 2 (PCAT2)
contains Pfam domains PF02135: TAZ zinc finger and
PF00569: Zinc finger, ZZ type; identical to cDNA
p300/CBP acetyltransferase-related protein 2 GI:12597460
Length = 5659
Score = 93.7 bits (47), Expect = 2e-18
Identities = 134/163 (82%)
Strand = Plus / Plus
Query: 283 gatgctgctaaacgcttagaggaaggactttttaaaatggctatgacaaaggaggaatac 342
|||| ||||| |||||||||||| || || |||||||| |||| |||||||| || |||
Sbjct: 241 gatgttgctagacgcttagaggaggggctgtttaaaattgctaacacaaaggaagattac 300
Query: 343 ttgaacccgtcaactcttgaatctcgcttgacaagcttaataaaaggcaggcaattgaat 402
||||||||||||| |||||| |||| || |||| |||| ||||||||||| || |||
Sbjct: 301 gtgaacccgtcaacccttgaacctcggctggcaagtctaatcaaaggcaggcagttaaat 360
Query: 403 aagtacaagcaccaacatgctgattcttctacgcttggaacaa 445
|| ||||| || | ||| ||| |||||||| || |||||||||
Sbjct: 361 aactacaatcagcgacacgctaattcttcttcggttggaacaa 403
>At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc finger (ZZ type)
family protein contains Pfam profiles PF02135: TAZ zinc
finger, PF00569: Zinc finger, ZZ type
Length = 5705
Score = 91.7 bits (46), Expect = 8e-18
Identities = 145/178 (81%)
Strand = Plus / Plus
Query: 255 tgatgatgcatcaaaggggaagcatttagatgctgctaaacgcttagaggaaggactttt 314
||||| ||||||||||| ||| || | |||| ||||| ||| ||||| ||||| || ||
Sbjct: 279 tgatgctgcatcaaaggcaaagtatatggatgttgctagacgtttagaagaagggctgtt 338
Query: 315 taaaatggctatgacaaaggaggaatacttgaacccgtcaactcttgaatctcgcttgac 374
||| |||||| | ||||||||||| ||| |||||| |||||| ||||||||||| | ||
Sbjct: 339 taagatggctgtcacaaaggaggattacatgaaccggtcaacccttgaatctcgtattac 398
Query: 375 aagcttaataaaaggcaggcaattgaataagtacaagcaccaacatgctgattcttct 432
|||| |||||||||| || || | ||||| ||||| || | ||||||| ||||||||
Sbjct: 399 aagcctaataaaaggaagacagataaataactacaatcagcgacatgctaattcttct 456
>At1g79010.1 68414.m09213 NADH-ubiquinone oxidoreductase 23 kDa subunit,
mitochondrial (TYKY) identical to SP|Q42599
NADH-ubiquinone oxidoreductase 23 kDa subunit,
mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
(Complex I-23KD) (CI-23KD) (Complex I- 28.5KD)
(CI-28.5KD) {Arabidopsis thaliana}
Length = 970
Score = 50.1 bits (25), Expect = 3e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 511 gagacagagattgctgagaatctga 535
|||||||||||||||||||||||||
Sbjct: 706 gagacagagattgctgagaatctga 730
>At1g16700.1 68414.m02000 NADH-ubiquinone oxidoreductase 23 kDa subunit,
mitochondrial, putative very strong similarity to
SP|Q42599 NADH-ubiquinone oxidoreductase 23 kDa subunit,
mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
(Complex I-23KD) (CI-23KD) (Complex I- 28.5KD)
(CI-28.5KD) {Arabidopsis thaliana}; contains Pfam
profile PF00037: iron-sulfur cluster-binding protein
Length = 1055
Score = 44.1 bits (22), Expect = 0.002
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 511 gagacagagattgctgagaatctgaagtcagtgagcct 548
|||||||||||||| |||||||||| ||| | ||||||
Sbjct: 806 gagacagagattgcagagaatctgaggtcggagagcct 843
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,754
Number of Sequences: 29161
Number of extensions: 26754
Number of successful extensions: 624
Number of sequences better than 10.0: 49
length of query: 786
length of database: 44,058,232
effective HSP length: 17
effective length of query: 769
effective length of database: 43,562,495
effective search space: 33499558655
effective search space used: 33499558655
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)