BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 10836.F
(562 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g21655.1 68415.m02576 expressed protein contains Pfam PF... 1098 0.0
At5g47980.1 68418.m05927 transferase family protein similar... 40 0.020
At5g03040.1 68418.m00252 calmodulin-binding family protein ... 40 0.020
At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomeras... 38 0.077
At3g55910.1 68416.m06213 expressed protein PA26, p53 regula... 38 0.077
>At2g21655.1 68415.m02576 expressed protein contains Pfam PF05617: Arabidopsis
thaliana protein of unknown function (DUF784)
Length = 562
Score = 1098 bits (554), Expect = 0.0
Identities = 560/562 (99%)
Strand = Plus / Plus
Query: 1 aaaaacaaagaaaatcaattaagaataaaatatcaaaatattttaaaatggagaataaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaaacaaagaaaatcaattaagaataaaatatcaaaatattttaaaatggagaataaaa 60
Query: 61 caatgtttatgatattttctttgatcatggttttgctatcgttttctcatccaactttcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caatgtttatgatattttctttgatcatggttttgctatcgttttctcatccaactttcg 120
Query: 121 gcaaagaaagcgataatgacaagccactcctcatttcagacgacgagtttgatgctatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcaaagaaagcgataatgacaagccactcctcatttcagacgacgagtttgatgctatga 180
Query: 181 tggcaagatctcctacatcggacaattataacgaaaatgttggtagtaaatattcaaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tggcaagatctcctacatcggacaattataacgaaaatgttggtagtaaatattcaaaga 240
Query: 241 aacaaataaattatcttatgaactgcagtaaaaagatggccgtcccagataaatgtatag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aacaaataaattatcttatgaactgcagtaaaaagatggccgtcccagataaatgtatag 300
Query: 301 aagaagtgatggctgaaattattcagaacaaaagtgcttcaagatattgttgtttgggga 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 301 aagaagtgatggctgaaattattcagaacaaaagtgcttcaagagattgttgtttgggga 360
Query: 361 tagtgaaagctggaaaggaatgtcacatggaatatatgaaattattttttcaaatgtatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tagtgaaagctggaaaggaatgtcacatggaatatatgaaattattttttcaaatgtatg 420
Query: 421 aactcaggcgttttacttctaaaaggttttccaaaactaatgagatatggaacagatgtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aactcaggcgttttacttctaaaaggttttccaaaactaatgagatatggaacagatgtt 480
Query: 481 ccaccgaaattggagttgtttcaccatattctggttaaaaaattgtaactaattttatta 540
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 481 ccaccgaaattggagttgtttcaccatattctggttaaaaaaatgtaactaattttatta 540
Query: 541 tttgaacaatactattatttcc 562
||||||||||||||||||||||
Sbjct: 541 tttgaacaatactattatttcc 562
>At5g47980.1 68418.m05927 transferase family protein similar to alcohol
acyltransferase [Fragaria x
ananassa][GI:10121328][PMID:10810141], deacetylvindoline
4-O-acetyltransferase [Catharanthus
roseus][GI:4091808][PMID:9681034]
Length = 1589
Score = 40.1 bits (20), Expect = 0.020
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 225 agtaaatattcaaagaaaca 244
||||||||||||||||||||
Sbjct: 1512 agtaaatattcaaagaaaca 1493
>At5g03040.1 68418.m00252 calmodulin-binding family protein similar to SF16
protein [Helianthus annuus] GI:560150; contains Pfam
profile PF00612: IQ calmodulin-binding motif
Length = 1912
Score = 40.1 bits (20), Expect = 0.020
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 227 taaatattcaaagaaacaaa 246
||||||||||||||||||||
Sbjct: 1815 taaatattcaaagaaacaaa 1796
>At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase, putative /
cyclophilin, putative / rotamase, putative similar to
cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 794
Score = 38.2 bits (19), Expect = 0.077
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 aaaaacaaagaaaatcaat 19
|||||||||||||||||||
Sbjct: 765 aaaaacaaagaaaatcaat 783
>At3g55910.1 68416.m06213 expressed protein PA26, p53 regulated PA26-T3 nuclear
protein, Homo sapiens, EMBL:AF033121
Length = 488
Score = 38.2 bits (19), Expect = 0.077
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 aaaaacaaagaaaatcaat 19
|||||||||||||||||||
Sbjct: 485 aaaaacaaagaaaatcaat 467
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,053
Number of Sequences: 29161
Number of extensions: 21053
Number of successful extensions: 1757
Number of sequences better than 10.0: 42
length of query: 562
length of database: 44,058,232
effective HSP length: 17
effective length of query: 545
effective length of database: 43,562,495
effective search space: 23741559775
effective search space used: 23741559775
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)