BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 10658.F
(580 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g52975.1 68418.m06577 expressed protein 1132 0.0
At5g52965.1 68418.m06573 hypothetical protein 531 e-150
At2g27315.1 68415.m03283 hypothetical protein 293 8e-79
At4g35165.1 68417.m04999 hypothetical protein 74 1e-12
At5g54062.1 68418.m06725 hypothetical protein 62 6e-09
>At5g52975.1 68418.m06577 expressed protein
Length = 579
Score = 1132 bits (571), Expect = 0.0
Identities = 577/579 (99%)
Strand = Plus / Plus
Query: 1 atccaaacatctaaaccaaaaaggaaacaaaacatatcaaagggttaacaaagaaagatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atccaaacatctaaaccaaaaaggaaacaaaacatatcaaagggttaacaaagaaagatg 60
Query: 61 ggaagcaaaactattctctcagtcattttgattgtttccctttgtgttgccatttttgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggaagcaaaactattctctcagtcattttgattgtttccctttgtgttgccatttttgtc 120
Query: 121 actcaaggagtagctcatatgcaaacaccaccgacgacggttccaggacttttcccacct 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 121 actcaaggagtagctcatatgcaaacaccaccgacgacggttccaggaattttcccacct 180
Query: 181 ggcttacctattgatcttgtaaaatgttggtcgtctctcttcaatgttgaaggatgtgtg 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcttacctattgatctggtaaaatgttggtcgtctctcttcaatgttgaaggatgtgtg 240
Query: 241 ctcgagatcgccaaatcaattttctctggaaaattcgaaaatgtcgaagccgcatgttgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctcgagatcgccaaatcaattttctctggaaaattcgaaaatgtcgaagccgcatgttgc 300
Query: 301 aaggcgttttcgaccttagatgctaactgttggcctcacatgtttccgttgaatccgttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaggcgttttcgaccttagatgctaactgttggcctcacatgtttccgttgaatccgttc 360
Query: 361 ttccctcctctcctcaaggatagctgcgctcgtattgtccccaactcccctacacacaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttccctcctctcctcaaggatagctgcgctcgtattgtccccaactcccctacacacaac 420
Query: 421 taagagcaagaatggttgttgatctacacttttaaattagtagttagcttcagagtaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taagagcaagaatggttgttgatctacacttttaaattagtagttagcttcagagtaata 480
Query: 481 acctaagttttatagttaaattctatgttggcaaaatgtgaactcatattttatgagacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 acctaagttttatagttaaattctatgttggcaaaatgtgaactcatattttatgagacc 540
Query: 541 tctttataggttttctcaataaagtagcaatattcatcg 579
|||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tctttataggttttctcaataaagtagcaatattcatcg 579
>At5g52965.1 68418.m06573 hypothetical protein
Length = 363
Score = 531 bits (268), Expect = e-150
Identities = 336/358 (93%), Gaps = 3/358 (0%)
Strand = Plus / Plus
Query: 66 caaaactattctctcagtcattttgattgtttccctttgtgttgccatttttgtcactca 125
||||||| |||||||| || ||| || ||||||||||||| ||||||||||||| ||||
Sbjct: 9 caaaacttttctctcaatctctttaatggtttccctttgtgctgccatttttgtctctca 68
Query: 126 aggagtagctcatatgcaaacaccaccgacgacggttccaggacttttcccacctggctt 185
||||||||||||||||||||||||||| ||| |||||||||||| ||| |||||||||
Sbjct: 69 aggagtagctcatatgcaaacaccaccaacg---gttccaggacttctcctacctggctt 125
Query: 186 acctattgatcttgtaaaatgttggtcgtctctcttcaatgttgaaggatgtgtgctcga 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 acctattgatcttgtaaaatgttggtcgtctctcttcaatgttgaaggatgtgtgctcga 185
Query: 246 gatcgccaaatcaattttctctggaaaattcgaaaatgtcgaagccgcatgttgcaaggc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 gatcgccaaatcaattttctctggaaaattcgaaaatgtcgaagccgcatgttgcaaggc 245
Query: 306 gttttcgaccttagatgctaactgttggcctcacatgtttccgttgaatccgttcttccc 365
|||||| ||||||||||||||||||||||| || ||||||||||||||||| || |||||
Sbjct: 246 gttttcaaccttagatgctaactgttggccccatatgtttccgttgaatccatttttccc 305
Query: 366 tcctctcctcaaggatagctgcgctcgtattgtccccaactcccctacacacaactaa 423
||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 306 tcctctcctcaaggacaactgcgctcgcattgtccccaactcccctacacacaactaa 363
>At2g27315.1 68415.m03283 hypothetical protein
Length = 363
Score = 293 bits (148), Expect = 8e-79
Identities = 312/366 (85%), Gaps = 3/366 (0%)
Strand = Plus / Plus
Query: 58 atgggaagcaaaactattctctcagtcattttgattgtttccctttgtgttgccattttt 117
|||||||||||| ||||| | |||||| | || || | |||||||||| | ||||||||
Sbjct: 1 atgggaagcaaagctattgtatcagtcttgttaatggcatccctttgtggtaccattttt 60
Query: 118 gtcactcaaggagtagctcatatgcaaacaccaccgacgacggttccaggacttttccca 177
|| || |||||||||||| | ||||||| ||||||| | ||||||||||||||| |
Sbjct: 61 gttacacaaggagtagctgaaatgcaaaagccaccgatgt---ttccaggacttttccaa 117
Query: 178 cctggcttacctattgatcttgtaaaatgttggtcgtctctcttcaatgttgaaggatgt 237
|| |||| ||| ||||||||||||||||| ||||||||||| ||| ||||||||||||
Sbjct: 118 ccaggctcacccgttgatcttgtaaaatgtatgtcgtctctctccaacgttgaaggatgt 177
Query: 238 gtgctcgagatcgccaaatcaattttctctggaaaattcgaaaatgtcgaagccgcatgt 297
|||||||| ||| | |||||||||||||| || ||||| |||||| | |||| |||||||
Sbjct: 178 gtgctcgaaatctctaaatcaattttctccggcaaatttgaaaatattgaaggcgcatgt 237
Query: 298 tgcaaggcgttttcgaccttagatgctaactgttggcctcacatgtttccgttgaatccg 357
||||||||||||||| |||||||||| ||||||||||| | ||||||||||||||||||
Sbjct: 238 tgcaaggcgttttcggccttagatgccaactgttggcccgaaatgtttccgttgaatccg 297
Query: 358 ttcttccctcctctcctcaaggatagctgcgctcgtattgtccccaactcccctacacac 417
|| |||||||||||||||||||||| || || ||||||||||| || || ||||||||
Sbjct: 298 tttttccctcctctcctcaaggatatttgtgcacgtattgtcccaaaatctcctacacat 357
Query: 418 aactaa 423
||||||
Sbjct: 358 aactaa 363
>At4g35165.1 68417.m04999 hypothetical protein
Length = 363
Score = 73.8 bits (37), Expect = 1e-12
Identities = 76/89 (85%)
Strand = Plus / Plus
Query: 292 gcatgttgcaaggcgttttcgaccttagatgctaactgttggcctcacatgtttccgttg 351
||||||||||| || || |||||| |||||||||||||||||||||| ||||| ||| |
Sbjct: 235 gcatgttgcaaagcattgtcgaccatagatgctaactgttggcctcatatgttcccgctt 294
Query: 352 aatccgttcttccctcctctcctcaagga 380
|| |||||||| || ||||| || |||||
Sbjct: 295 aacccgttctttccacctctgcttaagga 323
>At5g54062.1 68418.m06725 hypothetical protein
Length = 624
Score = 61.9 bits (31), Expect = 6e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 319 gatgctaactgttggcctcacatgtttccgttgaatccgttcttccctcctctcctcaag 378
||||| || |||||||| | ||||||||||||||||| || ||||||||||| ||||||
Sbjct: 256 gatgcaaagtgttggccaaaaatgtttccgttgaatccattattccctcctcttctcaag 315
Query: 379 gat 381
|||
Sbjct: 316 gat 318
Score = 54.0 bits (27), Expect = 1e-06
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 319 gatgctaactgttggcctcacatgtttccgttgaatccgttcttccctcctctcctcaa 377
||||| || |||||||| | |||||||| | ||||||||||||||||||||||||||
Sbjct: 520 gatgcaaaatgttggccaaaaatgtttccactaaatccgttcttccctcctctcctcaa 578
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,197
Number of Sequences: 29161
Number of extensions: 18197
Number of successful extensions: 1484
Number of sequences better than 10.0: 46
length of query: 580
length of database: 44,058,232
effective HSP length: 17
effective length of query: 563
effective length of database: 43,562,495
effective search space: 24525684685
effective search space used: 24525684685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)