BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BX841502.r
(1091 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g34150.1 68415.m04180 expressed protein 2113 0.0
At1g29170.1 68414.m03569 expressed protein ; expression sup... 74 3e-12
At4g18600.1 68417.m02755 expressed protein 38 0.15
At1g03790.1 68414.m00360 zinc finger (CCCH-type) family pro... 38 0.15
At3g60580.1 68416.m06777 zinc finger (C2H2 type) family pro... 36 0.60
>At2g34150.1 68415.m04180 expressed protein
Length = 2822
Score = 2113 bits (1066), Expect = 0.0
Identities = 1082/1086 (99%), Gaps = 1/1086 (0%)
Strand = Plus / Plus
Query: 7 aatctcctaggactgaa-ccatcgaaaccgaaaattatagcagaaactattccagagatt 65
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1700 aatctcctaggactgaaaccatcgaaaccgaaaattatagcagaaactattccagagatt 1759
Query: 66 gttgaagacattgattctgaaaccttccaagagcacttaagagaagattataaggctcct 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1760 gttgaagacattgattctgaaaccttccaagagcacttaagagaagattataaggctcct 1819
Query: 126 tttgattggtttacttcatctcctccacttgatcacatgaaaatatctttcaaatcctca 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1820 tttgattggtttacttcatctcctccacttgatcacatgaaaatatctttcaaatcctca 1879
Query: 186 gaaaccttgccaagttctgaactacagctaaaacttccagatgaatatacattttcttcg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1880 gaaaccttgccaagttctgaactacagctaaaacttccagatgaatatacattttcttcg 1939
Query: 246 tttcagttggtgccagagactattgctacttcacttcctgattctgattcagacaaggac 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1940 tttcagttggtgccagagactattgctacttcacttcctgattctgattcagacaaggac 1999
Query: 306 actttctgtagatcttcttcttacatttcagacaacagtgacaatgacaatcgctctgtg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2000 actttctgtagatcttcttcttacatttcagacaacagtgacaatgacaatcgctctgtg 2059
Query: 366 tcaatgtctgagcaacagtgggaagaagaatcagaaggtatccgagaaagcaagaggcaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2060 tcaatgtctgagcaacagtgggaagaagaatcagaaggtatccgagaaagcaagaggcaa 2119
Query: 426 caagagctctatgattcgtttcacagagtcaatgctgaagcttcttctctaccagttcca 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2120 caagagctctatgattcgtttcacagagtcaatgctgaagcttcttctctaccagttcca 2179
Query: 486 tttccaaagattgaaacaacaaatggttgtttagttgaaaatgtctcttacctccaaaat 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2180 tttccaaagattgaaacaacaaatggttgtttagttgaaaatgtctcttacctccaaaat 2239
Query: 546 ccagctgagccattaccaccgcctctcccaccgttacagtggatggtttcgaaaataccg 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2240 ccagctgagccattaccaccgcctctcccaccgttacagtggatggtttcgaaaataccg 2299
Query: 606 tcagctggattcgaggataacaacaagcagtctctaaaggatgctctcacacaggcattt 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2300 tcagctggattcgaggataacaacaagcagtctctaaaggatgctctcacacaggcattt 2359
Query: 666 gagaagaacaacaattctttaactgcagtcaagaaaaaagaaccacacattgtcactgtt 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2360 gagaagaacaacaattctttaactgcagtcaagaaaaaagaaccacacattgtcactgtt 2419
Query: 726 tctgatcctaaacttgtaaccaaggtacatctgaagaacaatgtgagggattataagcaa 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2420 tctgatcctaaacttgtaaccaaggtacatctgaagaacaatgtgagggattataagcaa 2479
Query: 786 agtcatggcaacacaaatgagacagaagctggagacttcttgcatcaaattcgaactaaa 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2480 agtcatggcaacacaaatgagacagaagctggagacttcttgcatcaaattcgaactaaa 2539
Query: 846 caattcaacttgagacgtgtggtcaggacaaagacatcatcatcagaaactacaatgaac 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2540 caattcaacttgagacgtgtggtcaggacaaagacatcatcatcagaaactacaatgaac 2599
Query: 906 accaatattagcgtgattctagagaaggcaaactctatccgacaggctgtagcaagcgac 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2600 accaatattagcgtgattctagagaaggcaaactctatccgacaggctgtagcaagcgac 2659
Query: 966 gatggagaaggcgaaagcgatacatggagcgatagcgacacatgacaacatcattcattt 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2660 gatggagaaggcgaaagcgatacatggagcgatagcgacacatgacaacatcattcattt 2719
Query: 1026 cggttctcatatgtttattgtgttgaatatataggtcgattttgtcgtacgtttatattt 1085
||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct: 2720 cggttctcatatgtttattgtgtagtagatataggtcgattttgtcgtacgtttatattt 2779
Query: 1086 gtatct 1091
||||||
Sbjct: 2780 gtatct 2785
>At1g29170.1 68414.m03569 expressed protein ; expression supported by MPSS
Length = 3051
Score = 73.8 bits (37), Expect = 3e-12
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 794 caacacaaatgagacagaagctggagacttcttgcatcaaattcgaactaaacaattcaa 853
|||| |||| ||||| ||| |||||||||||||||| ||||| ||||| ||||||||||
Sbjct: 2832 caacgcaaaggagactgaaactggagacttcttgcaacaaatccgaacacaacaattcaa 2891
Query: 854 cttgagacgtgtggtcaggacaaagacatcatc 886
| | || | |||||||| ||||| |||||||||
Sbjct: 2892 ccttaggcctgtggtcatgacaacgacatcatc 2924
Score = 58.0 bits (29), Expect = 2e-07
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 273 acttcacttcctgattctgattcagacaaggacactttctgtagatcttcttcttacatt 332
||||| |||||||||||| |||| ||| | |||||||| |||||||| ||| |||||||
Sbjct: 2335 acttcccttcctgattcttattctgacgacgacactttttgtagatcatctccttacatg 2394
Query: 333 tcaga 337
|||||
Sbjct: 2395 tcaga 2399
Score = 48.1 bits (24), Expect = 2e-04
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 537 ctccaaaatccagctgagccattaccaccgcc 568
||||||||||| |||||||| |||||||||||
Sbjct: 2593 ctccaaaatcctgctgagcccttaccaccgcc 2624
Score = 46.1 bits (23), Expect = 6e-04
Identities = 61/73 (83%), Gaps = 3/73 (4%)
Strand = Plus / Plus
Query: 927 gagaaggcaaactctatccgacaggctgtagcaagcgacgatggagaaggcgaaagcgat 986
||||| |||||||| || || ||||||||||| ||| | |||||||| |||||||||
Sbjct: 2977 gagaaagcaaactcaatacgccaggctgtagctagcaaagatggaga---tgaaagcgat 3033
Query: 987 acatggagcgata 999
|||||||| ||||
Sbjct: 3034 acatggagtgata 3046
Score = 46.1 bits (23), Expect = 6e-04
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 120 gctccttttgattggtttacttcatctcctccacttgatcacatgaaaatatctttcaa 178
|||||| |||||||| | ||||| ||||| || ||| | ||||||||||||||| ||||
Sbjct: 2173 gctcctattgattggatcacttcgtctccgcctcttcaacacatgaaaatatctctcaa 2231
>At4g18600.1 68417.m02755 expressed protein
Length = 5997
Score = 38.2 bits (19), Expect = 0.15
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 241 cttcgtttcagttggtgccagag 263
|||||||||||||||| ||||||
Sbjct: 5300 cttcgtttcagttggttccagag 5322
>At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein contains Pfam
domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar)
Length = 1573
Score = 38.2 bits (19), Expect = 0.15
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 385 gggaagaagaatcagaagg 403
|||||||||||||||||||
Sbjct: 170 gggaagaagaatcagaagg 152
>At3g60580.1 68416.m06777 zinc finger (C2H2 type) family protein contains Pfam
domain, PF00096: Zinc finger, C2H2 type
Length = 1106
Score = 36.2 bits (18), Expect = 0.60
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 387 gaagaagaatcagaaggt 404
||||||||||||||||||
Sbjct: 531 gaagaagaatcagaaggt 548
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 49,341
Number of Sequences: 29161
Number of extensions: 49341
Number of successful extensions: 1088
Number of sequences better than 10.0: 104
length of query: 1091
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1073
effective length of database: 43,533,334
effective search space: 46711267382
effective search space used: 46711267382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)