BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BX841502.r
         (1091 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34150.1  68415.m04180 expressed protein                      2113   0.0  
At1g29170.1  68414.m03569 expressed protein ; expression sup...    74   3e-12
At4g18600.1  68417.m02755 expressed protein                        38   0.15 
At1g03790.1  68414.m00360 zinc finger (CCCH-type) family pro...    38   0.15 
At3g60580.1  68416.m06777 zinc finger (C2H2 type) family pro...    36   0.60 
>At2g34150.1 68415.m04180 expressed protein
          Length = 2822

 Score = 2113 bits (1066), Expect = 0.0
 Identities = 1082/1086 (99%), Gaps = 1/1086 (0%)
 Strand = Plus / Plus

                                                                        
Query: 7    aatctcctaggactgaa-ccatcgaaaccgaaaattatagcagaaactattccagagatt 65
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1700 aatctcctaggactgaaaccatcgaaaccgaaaattatagcagaaactattccagagatt 1759

                                                                        
Query: 66   gttgaagacattgattctgaaaccttccaagagcacttaagagaagattataaggctcct 125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1760 gttgaagacattgattctgaaaccttccaagagcacttaagagaagattataaggctcct 1819

                                                                        
Query: 126  tttgattggtttacttcatctcctccacttgatcacatgaaaatatctttcaaatcctca 185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1820 tttgattggtttacttcatctcctccacttgatcacatgaaaatatctttcaaatcctca 1879

                                                                        
Query: 186  gaaaccttgccaagttctgaactacagctaaaacttccagatgaatatacattttcttcg 245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1880 gaaaccttgccaagttctgaactacagctaaaacttccagatgaatatacattttcttcg 1939

                                                                        
Query: 246  tttcagttggtgccagagactattgctacttcacttcctgattctgattcagacaaggac 305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1940 tttcagttggtgccagagactattgctacttcacttcctgattctgattcagacaaggac 1999

                                                                        
Query: 306  actttctgtagatcttcttcttacatttcagacaacagtgacaatgacaatcgctctgtg 365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2000 actttctgtagatcttcttcttacatttcagacaacagtgacaatgacaatcgctctgtg 2059

                                                                        
Query: 366  tcaatgtctgagcaacagtgggaagaagaatcagaaggtatccgagaaagcaagaggcaa 425
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2060 tcaatgtctgagcaacagtgggaagaagaatcagaaggtatccgagaaagcaagaggcaa 2119

                                                                        
Query: 426  caagagctctatgattcgtttcacagagtcaatgctgaagcttcttctctaccagttcca 485
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2120 caagagctctatgattcgtttcacagagtcaatgctgaagcttcttctctaccagttcca 2179

                                                                        
Query: 486  tttccaaagattgaaacaacaaatggttgtttagttgaaaatgtctcttacctccaaaat 545
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2180 tttccaaagattgaaacaacaaatggttgtttagttgaaaatgtctcttacctccaaaat 2239

                                                                        
Query: 546  ccagctgagccattaccaccgcctctcccaccgttacagtggatggtttcgaaaataccg 605
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2240 ccagctgagccattaccaccgcctctcccaccgttacagtggatggtttcgaaaataccg 2299

                                                                        
Query: 606  tcagctggattcgaggataacaacaagcagtctctaaaggatgctctcacacaggcattt 665
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2300 tcagctggattcgaggataacaacaagcagtctctaaaggatgctctcacacaggcattt 2359

                                                                        
Query: 666  gagaagaacaacaattctttaactgcagtcaagaaaaaagaaccacacattgtcactgtt 725
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2360 gagaagaacaacaattctttaactgcagtcaagaaaaaagaaccacacattgtcactgtt 2419

                                                                        
Query: 726  tctgatcctaaacttgtaaccaaggtacatctgaagaacaatgtgagggattataagcaa 785
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2420 tctgatcctaaacttgtaaccaaggtacatctgaagaacaatgtgagggattataagcaa 2479

                                                                        
Query: 786  agtcatggcaacacaaatgagacagaagctggagacttcttgcatcaaattcgaactaaa 845
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2480 agtcatggcaacacaaatgagacagaagctggagacttcttgcatcaaattcgaactaaa 2539

                                                                        
Query: 846  caattcaacttgagacgtgtggtcaggacaaagacatcatcatcagaaactacaatgaac 905
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2540 caattcaacttgagacgtgtggtcaggacaaagacatcatcatcagaaactacaatgaac 2599

                                                                        
Query: 906  accaatattagcgtgattctagagaaggcaaactctatccgacaggctgtagcaagcgac 965
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2600 accaatattagcgtgattctagagaaggcaaactctatccgacaggctgtagcaagcgac 2659

                                                                        
Query: 966  gatggagaaggcgaaagcgatacatggagcgatagcgacacatgacaacatcattcattt 1025
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2660 gatggagaaggcgaaagcgatacatggagcgatagcgacacatgacaacatcattcattt 2719

                                                                        
Query: 1026 cggttctcatatgtttattgtgttgaatatataggtcgattttgtcgtacgtttatattt 1085
            ||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct: 2720 cggttctcatatgtttattgtgtagtagatataggtcgattttgtcgtacgtttatattt 2779

                  
Query: 1086 gtatct 1091
            ||||||
Sbjct: 2780 gtatct 2785
>At1g29170.1 68414.m03569 expressed protein ; expression supported by MPSS
          Length = 3051

 Score = 73.8 bits (37), Expect = 3e-12
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                        
Query: 794  caacacaaatgagacagaagctggagacttcttgcatcaaattcgaactaaacaattcaa 853
            |||| |||| ||||| ||| |||||||||||||||| ||||| |||||  ||||||||||
Sbjct: 2832 caacgcaaaggagactgaaactggagacttcttgcaacaaatccgaacacaacaattcaa 2891

                                             
Query: 854  cttgagacgtgtggtcaggacaaagacatcatc 886
            | | || | |||||||| ||||| |||||||||
Sbjct: 2892 ccttaggcctgtggtcatgacaacgacatcatc 2924

 Score = 58.0 bits (29), Expect = 2e-07
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                        
Query: 273  acttcacttcctgattctgattcagacaaggacactttctgtagatcttcttcttacatt 332
            ||||| |||||||||||| |||| ||| | |||||||| |||||||| ||| ||||||| 
Sbjct: 2335 acttcccttcctgattcttattctgacgacgacactttttgtagatcatctccttacatg 2394

                 
Query: 333  tcaga 337
            |||||
Sbjct: 2395 tcaga 2399

 Score = 48.1 bits (24), Expect = 2e-04
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 537  ctccaaaatccagctgagccattaccaccgcc 568
            ||||||||||| |||||||| |||||||||||
Sbjct: 2593 ctccaaaatcctgctgagcccttaccaccgcc 2624

 Score = 46.1 bits (23), Expect = 6e-04
 Identities = 61/73 (83%), Gaps = 3/73 (4%)
 Strand = Plus / Plus

                                                                        
Query: 927  gagaaggcaaactctatccgacaggctgtagcaagcgacgatggagaaggcgaaagcgat 986
            ||||| |||||||| || || ||||||||||| ||| | ||||||||    |||||||||
Sbjct: 2977 gagaaagcaaactcaatacgccaggctgtagctagcaaagatggaga---tgaaagcgat 3033

                         
Query: 987  acatggagcgata 999
            |||||||| ||||
Sbjct: 3034 acatggagtgata 3046

 Score = 46.1 bits (23), Expect = 6e-04
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                       
Query: 120  gctccttttgattggtttacttcatctcctccacttgatcacatgaaaatatctttcaa 178
            |||||| |||||||| | ||||| ||||| || ||| | ||||||||||||||| ||||
Sbjct: 2173 gctcctattgattggatcacttcgtctccgcctcttcaacacatgaaaatatctctcaa 2231
>At4g18600.1 68417.m02755 expressed protein
          Length = 5997

 Score = 38.2 bits (19), Expect = 0.15
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 241  cttcgtttcagttggtgccagag 263
            |||||||||||||||| ||||||
Sbjct: 5300 cttcgtttcagttggttccagag 5322
>At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein contains Pfam
           domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
           similar)
          Length = 1573

 Score = 38.2 bits (19), Expect = 0.15
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 385 gggaagaagaatcagaagg 403
           |||||||||||||||||||
Sbjct: 170 gggaagaagaatcagaagg 152
>At3g60580.1 68416.m06777 zinc finger (C2H2 type) family protein contains Pfam
           domain, PF00096: Zinc finger, C2H2 type
          Length = 1106

 Score = 36.2 bits (18), Expect = 0.60
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 387 gaagaagaatcagaaggt 404
           ||||||||||||||||||
Sbjct: 531 gaagaagaatcagaaggt 548
  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 49,341
Number of Sequences: 29161
Number of extensions: 49341
Number of successful extensions: 1088
Number of sequences better than 10.0: 104
length of query: 1091
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1073
effective length of database: 43,533,334
effective search space: 46711267382
effective search space used: 46711267382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)