BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BX841463.r
(1069 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30890.2 68417.m04387 ubiquitin-specific protease 24, pu... 1974 0.0
At4g30890.1 68417.m04386 ubiquitin-specific protease 24, pu... 1974 0.0
At3g30450.1 68416.m03852 hypothetical protein similar to At... 38 0.15
At2g14140.1 68415.m01575 hypothetical protein similar to At... 38 0.15
At5g66840.1 68418.m08427 SAP domain-containing protein cont... 36 0.59
>At4g30890.2 68417.m04387 ubiquitin-specific protease 24, putative (UBP24)
identical to ubiquitin-specific protease 24 [Arabidopsis
thaliana] GI:11993488
Length = 2351
Score = 1974 bits (996), Expect = 0.0
Identities = 1019/1024 (99%), Gaps = 2/1024 (0%)
Strand = Plus / Plus
Query: 47 tactcaacaaaatgtctggtag-ccaaggcaggaagatgctcaagagtttttgagtttta 105
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1271 tactcaacaacatgtctggtaggccaaggcaggaagatgctcaagagtttttgagtttta 1330
Query: 106 taatggaccaaatgcatgatgagttgttgaaactaaaggaacagccccccaaagtcaccg 165
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 1331 taatggaccaaatgcatgatgagttgttgaaactcaaggaacagtcccccaaagtcaccg 1390
Query: 166 ctttctaagtcatcggttatttcttctgccaacgatgatggtgatgaatgggaaacagtt 225
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1391 ctt-ctaagtcatcggttatttcttctgccaacgatgatggtgatgaatgggaaacagtt 1449
Query: 226 ggacccaaaaacaaatcagctgtgacaagaacacaaagttttgttccgtctgagcttagt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1450 ggacccaaaaacaaatcagctgtgacaagaacacaaagttttgttccgtctgagcttagt 1509
Query: 286 gagatatttggcgggcagcttaaaagcgtagtgaaggcaaaaggaactaaagcttcggct 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1510 gagatatttggcgggcagcttaaaagcgtagtgaaggcaaaaggaactaaagcttcggct 1569
Query: 346 actgtacagccgtatctcttgctacaccttgatattcatccggacggtgtgcaaggaata 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1570 actgtacagccgtatctcttgctacaccttgatattcatccggacggtgtgcaaggaata 1629
Query: 406 gaagacgcgttgcatttgttttctgcccaagaagatcttgaaggatatagagcctcggtt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1630 gaagacgcgttgcatttgttttctgcccaagaagatcttgaaggatatagagcctcggtt 1689
Query: 466 actgggaagactggtgtagtgagtgctagtaagtcgataaagatacagaaactctcaaag 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1690 actgggaagactggtgtagtgagtgctagtaagtcgataaagatacagaaactctcaaag 1749
Query: 526 ataatgatactgcacctaatgcgttttagctacggaagccaagggagtactaagctgcgt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1750 ataatgatactgcacctaatgcgttttagctacggaagccaagggagtactaagctgcgt 1809
Query: 586 aaaggcgttaaatttccccttgaactcaacttaaaccgcagccatcttgtttctctatcc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1810 aaaggcgttaaatttccccttgaactcaacttaaaccgcagccatcttgtttctctatcc 1869
Query: 646 aatgagagtttgagatatgaacttgtggcaacaattacccaccacggatgggatccctca 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1870 aatgagagtttgagatatgaacttgtggcaacaattacccaccacggatgggatccctca 1929
Query: 706 aaaggacactacaccacagatgctcgacgaaagaatggtcaatggctaaggtttgatgat 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1930 aaaggacactacaccacagatgctcgacgaaagaatggtcaatggctaaggtttgatgat 1989
Query: 766 gcctctgtgacccccatagggacaaaactggtgttgcacgatcaagcctatgtcctcttc 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1990 gcctctgtgacccccatagggacaaaactggtgttgcacgatcaagcctatgtcctcttc 2049
Query: 826 tacaagcaagtgtaagagattcaaaggcagcagatttccatggtcggagaaagaagagta 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2050 tacaagcaagtgtaagagattcaaaggcagcagatttccatggtcggagaaagaagagta 2109
Query: 886 aactctttatcggcttgtgtccggtcttctgagtttaagtcacgatgctataatctggtt 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2110 aactctttatcggcttgtgtccggtcttctgagtttaagtcacgatgctataatctggtt 2169
Query: 946 ctcatcttatataactttgaaggagggggtctcagtaggtaaatagttttagagtacctg 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2170 ctcatcttatataactttgaaggagggggtctcagtaggtaaatagttttagagtacctg 2229
Query: 1006 gtttacactggaagttttgttatgattccttgagatgggtgttttaatctgattttacta 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2230 gtttacactggaagttttgttatgattccttgagatgggtgttttaatctgattttacta 2289
Query: 1066 cttc 1069
||||
Sbjct: 2290 cttc 2293
>At4g30890.1 68417.m04386 ubiquitin-specific protease 24, putative (UBP24)
identical to ubiquitin-specific protease 24 [Arabidopsis
thaliana] GI:11993488
Length = 2126
Score = 1974 bits (996), Expect = 0.0
Identities = 1019/1024 (99%), Gaps = 2/1024 (0%)
Strand = Plus / Plus
Query: 47 tactcaacaaaatgtctggtag-ccaaggcaggaagatgctcaagagtttttgagtttta 105
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1046 tactcaacaacatgtctggtaggccaaggcaggaagatgctcaagagtttttgagtttta 1105
Query: 106 taatggaccaaatgcatgatgagttgttgaaactaaaggaacagccccccaaagtcaccg 165
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 1106 taatggaccaaatgcatgatgagttgttgaaactcaaggaacagtcccccaaagtcaccg 1165
Query: 166 ctttctaagtcatcggttatttcttctgccaacgatgatggtgatgaatgggaaacagtt 225
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1166 ctt-ctaagtcatcggttatttcttctgccaacgatgatggtgatgaatgggaaacagtt 1224
Query: 226 ggacccaaaaacaaatcagctgtgacaagaacacaaagttttgttccgtctgagcttagt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1225 ggacccaaaaacaaatcagctgtgacaagaacacaaagttttgttccgtctgagcttagt 1284
Query: 286 gagatatttggcgggcagcttaaaagcgtagtgaaggcaaaaggaactaaagcttcggct 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 gagatatttggcgggcagcttaaaagcgtagtgaaggcaaaaggaactaaagcttcggct 1344
Query: 346 actgtacagccgtatctcttgctacaccttgatattcatccggacggtgtgcaaggaata 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1345 actgtacagccgtatctcttgctacaccttgatattcatccggacggtgtgcaaggaata 1404
Query: 406 gaagacgcgttgcatttgttttctgcccaagaagatcttgaaggatatagagcctcggtt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1405 gaagacgcgttgcatttgttttctgcccaagaagatcttgaaggatatagagcctcggtt 1464
Query: 466 actgggaagactggtgtagtgagtgctagtaagtcgataaagatacagaaactctcaaag 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1465 actgggaagactggtgtagtgagtgctagtaagtcgataaagatacagaaactctcaaag 1524
Query: 526 ataatgatactgcacctaatgcgttttagctacggaagccaagggagtactaagctgcgt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1525 ataatgatactgcacctaatgcgttttagctacggaagccaagggagtactaagctgcgt 1584
Query: 586 aaaggcgttaaatttccccttgaactcaacttaaaccgcagccatcttgtttctctatcc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1585 aaaggcgttaaatttccccttgaactcaacttaaaccgcagccatcttgtttctctatcc 1644
Query: 646 aatgagagtttgagatatgaacttgtggcaacaattacccaccacggatgggatccctca 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1645 aatgagagtttgagatatgaacttgtggcaacaattacccaccacggatgggatccctca 1704
Query: 706 aaaggacactacaccacagatgctcgacgaaagaatggtcaatggctaaggtttgatgat 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1705 aaaggacactacaccacagatgctcgacgaaagaatggtcaatggctaaggtttgatgat 1764
Query: 766 gcctctgtgacccccatagggacaaaactggtgttgcacgatcaagcctatgtcctcttc 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1765 gcctctgtgacccccatagggacaaaactggtgttgcacgatcaagcctatgtcctcttc 1824
Query: 826 tacaagcaagtgtaagagattcaaaggcagcagatttccatggtcggagaaagaagagta 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1825 tacaagcaagtgtaagagattcaaaggcagcagatttccatggtcggagaaagaagagta 1884
Query: 886 aactctttatcggcttgtgtccggtcttctgagtttaagtcacgatgctataatctggtt 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 aactctttatcggcttgtgtccggtcttctgagtttaagtcacgatgctataatctggtt 1944
Query: 946 ctcatcttatataactttgaaggagggggtctcagtaggtaaatagttttagagtacctg 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1945 ctcatcttatataactttgaaggagggggtctcagtaggtaaatagttttagagtacctg 2004
Query: 1006 gtttacactggaagttttgttatgattccttgagatgggtgttttaatctgattttacta 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2005 gtttacactggaagttttgttatgattccttgagatgggtgttttaatctgattttacta 2064
Query: 1066 cttc 1069
||||
Sbjct: 2065 cttc 2068
>At3g30450.1 68416.m03852 hypothetical protein similar to At2g04970, At2g15200,
At1g32830, At2g14140, At4g03990, At5g34895, At3g47270,
At2g02200
Length = 2403
Score = 38.2 bits (19), Expect = 0.15
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 523 aagataatgatactgcacc 541
|||||||||||||||||||
Sbjct: 1622 aagataatgatactgcacc 1640
>At2g14140.1 68415.m01575 hypothetical protein similar to At2g04970, At2g15200,
At1g32830, At3g30450, At4g03990, At5g34895, At3g47270,
At2g02200
Length = 2544
Score = 38.2 bits (19), Expect = 0.15
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 523 aagataatgatactgcacc 541
|||||||||||||||||||
Sbjct: 1907 aagataatgatactgcacc 1925
>At5g66840.1 68418.m08427 SAP domain-containing protein contains Pfam domain
PF02037: SAP domain
Length = 1656
Score = 36.2 bits (18), Expect = 0.59
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 196 aacgatgatggtgatgaa 213
||||||||||||||||||
Sbjct: 211 aacgatgatggtgatgaa 228
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 32,513
Number of Sequences: 29161
Number of extensions: 32513
Number of successful extensions: 841
Number of sequences better than 10.0: 70
length of query: 1069
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1051
effective length of database: 43,533,334
effective search space: 45753534034
effective search space used: 45753534034
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)