BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BX841442.r
(1052 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g07720.1 68414.m00832 beta-ketoacyl-CoA synthase family ... 1846 0.0
At2g28630.1 68415.m03481 beta-ketoacyl-CoA synthase family ... 246 3e-64
At5g21170.1 68418.m02530 5'-AMP-activated protein kinase be... 42 0.009
At3g51325.1 68416.m05618 zinc finger (C3HC4-type RING finge... 40 0.037
At1g05250.1 68414.m00531 peroxidase, putative similar to pe... 40 0.037
>At1g07720.1 68414.m00832 beta-ketoacyl-CoA synthase family protein similar to
GB:AAC99312 from [Arabidopsis thaliana] (Plant J. (1999)
In press)
Length = 1799
Score = 1846 bits (931), Expect = 0.0
Identities = 971/979 (99%), Gaps = 4/979 (0%)
Strand = Plus / Plus
Query: 78 gagagccatgttca-gctaaggtgtttg-taaggacgcaccatggagccagagacgattc 135
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 749 gagagccatgttcaagctaaggtgtttggtaaggacgcaccatggagccagagacgattc 808
Query: 136 attcaacgcctgtgtccaaaaagaagacgagctaggacatatcgtt-tccacttagacaa 194
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 809 attcaacgcctgtgtccaaaaagaagacgagctaggacatatcggtgtccacttagacaa 868
Query: 195 gactcttccaaaagcagcgactcgtgctctcatagacaacctcaaagtcatcactcccaa 254
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 869 gactcttccaaaagcagcgactcgtgctttcatagacaacctcaaagtcatcactcccaa 928
Query: 255 gattcttccggtaacagagctcttaaggtttatgttgtgtcttcttctcaagaagcttcg 314
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 929 gattcttccggtaacagagcttttaaggtttatgttgtgtcttcttctcaagaagcttcg 988
Query: 315 tagcagccctagcaaaggctcgacgaacgtgactcaggcagctccaaaggcaggggttaa 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 tagcagccctagcaaaggctcgacgaacgtgactcaggcagctccaaaggcaggggttaa 1048
Query: 375 agcagggattaacttcaagaccggtattgaccatttctgcattcacactggaggtaaagc 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 agcagggattaacttcaagaccggtattgaccatttctgcattcacactggaggtaaagc 1108
Query: 435 ggttatcgacgcgatcggttacagcctcgacttaaacgagtacgatcttgaaccggcgag 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 ggttatcgacgcgatcggttacagcctcgacttaaacgagtacgatcttgaaccggcgag 1168
Query: 495 gatgac-ttacaccggtttggaaacacgtcagcgagtagcttgtggtatgttttggggta 553
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 gatgacgttacaccggtttggaaacacgtcagcgagtagcttgtggtatgttttggggta 1228
Query: 554 tatggaggcaaagaagaggctgaagagaggagatagagtgttcatgatcagctttggggc 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 tatggaggcaaagaagaggctgaagagaggagatagagtgttcatgatcagctttggggc 1288
Query: 614 aggtttcaagtgcaatagttgcgtttgggaagttgtgagagatcttaacgttggagaagc 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1289 aggtttcaagtgcaatagttgcgtttgggaagttgtgagagatcttaacgttggagaagc 1348
Query: 674 tgtagggaatgtgtggaatcattgcattaatcaatacccaccaaaatcgattttgaatcc 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1349 tgtagggaatgtgtggaatcattgcattaatcaatacccaccaaaatcgattttgaatcc 1408
Query: 734 gtttttcgagaagtatggttggattcatgaagaagaagatcctgatactttcaagatgcc 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1409 gtttttcgagaagtatggttggattcatgaagaagaagatcctgatactttcaagatgcc 1468
Query: 794 cgaaggatttatgtgaatgttttcttgggaatcattgtaaacatacatatacagttactt 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1469 cgaaggatttatgtgaatgttttcttgggaatcattgtaaacatacatatacagttactt 1528
Query: 854 caaactgcaaatcccacaaaaggtgactatatagtttattttcctctttctctcttttat 913
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1529 caaactgcaaatcccacaaaaggtgactatatagtttattttcctctttctttcttttat 1588
Query: 914 tttatttaatgtggattctgaattgctacattttactctctctttctttctttttctttt 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1589 tttatttaatgtggattctgaattgctacattttactctctctttctttctttttctttt 1648
Query: 974 tttctaattggatgggaaagaaaatatgaatgacaaagatactgcgatatactagttttc 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1649 tttctaattggatgggaaagaaaatatgaatgacaaagatactgcgatatactagttttc 1708
Query: 1034 tctcatttttttaaataaa 1052
|||||||||||||||||||
Sbjct: 1709 tctcatttttttaaataaa 1727
>At2g28630.1 68415.m03481 beta-ketoacyl-CoA synthase family protein
Length = 1927
Score = 246 bits (124), Expect = 3e-64
Identities = 343/414 (82%), Gaps = 4/414 (0%)
Strand = Plus / Plus
Query: 376 gcagggattaacttcaagaccggtattgaccatttctgcattcacactggaggtaaagcg 435
||||| || |||||||||||||| || || ||||| ||||| || || ||||| |||||
Sbjct: 1096 gcaggaatcaacttcaagaccgggatcgaacatttttgcatacataccggaggaaaagct 1155
Query: 436 gttatcgacgcgatcggttacagcctcgacttaaacgagtacgatcttgaaccggcgagg 495
|| || || | ||| || | ||| | || ||||||||||| ||| ||||||| ||||||
Sbjct: 1156 gtgattgatgggattggacatagcttggatttaaacgagtatgatattgaacctgcgagg 1215
Query: 496 atgact-tacaccggtttggaaacacgtcagcgagtagcttgtggtatgttttggggtat 554
|||||| | ||||||||||| || || || |||||||| ||||||||||| |||| ||
Sbjct: 1216 atgactcttcaccggtttggcaatacttcggcgagtagtttgtggtatgtgttggcttac 1275
Query: 555 atggaggcaaagaagaggctgaagagaggagatagagtgttcatgatcagctttggggca 614
|||||||| |||||||| ||||||||||||||||||| || ||||| |||||||| ||
Sbjct: 1276 atggaggccaagaagagattgaagagaggagatagagtttttatgataagctttggagct 1335
Query: 615 ggtttcaagtgcaatagttgcgtttgggaagttgtgagagatcttaacgttggagaagct 674
||||| ||||| ||||| |||||||||||||||||||||||||||| | ||| ||| |
Sbjct: 1336 ggttttaagtgtaatagctgcgtttgggaagttgtgagagatcttactggtggtgaatca 1395
Query: 675 gtagggaatgtgtggaatcattgcattaatcaatacccaccaaaatcgattttgaatccg 734
||| ||||||||||||||||||||| || | || ||||||||||||||| |||||||
Sbjct: 1396 aaaggaaatgtgtggaatcattgcattgatgattatccaccaaaatcgattctgaatcct 1455
Query: 735 tttttcgagaagtatggttggattcatgaagaagaagatcctgatactttcaag 788
| ||| ||||||| ||| ||||||| |||| ||||||||||| |||||||||
Sbjct: 1456 tatttggagaagtttggctggattc---aagatgaagatcctgacactttcaag 1506
Score = 60.0 bits (30), Expect = 4e-08
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 193 aagactcttccaaaagcagcgactcgtgctctcatagacaacctcaaagtcatcactccc 252
|||| ||| |||||||| || ||||||||| | |||| |||||||| || || || |||
Sbjct: 916 aagaatctaccaaaagccgctactcgtgcttttgtagaaaacctcaaggttataacaccc 975
Query: 253 aagattcttccggtaacagagctcttaaggtttatgtt 290
||||||||||| ||||| ||||| ||||||| |||||
Sbjct: 976 aagattcttcccgtaaccgagcttataaggttcatgtt 1013
>At5g21170.1 68418.m02530 5'-AMP-activated protein kinase beta-2 subunit, putative
similar to Swiss-Prot:Q9QZH4 5'-AMP-activated protein
kinase, beta-2 subunit (AMPK beta-2 chain) [Rattus
norvegicus]
Length = 1251
Score = 42.1 bits (21), Expect = 0.009
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 949 ctctctctttctttctttttc 969
|||||||||||||||||||||
Sbjct: 1026 ctctctctttctttctttttc 1046
>At3g51325.1 68416.m05618 zinc finger (C3HC4-type RING finger) family protein
contains Pfam profile PF00097:Zinc finger, C3HC4 type
(RING finger); low similarity to SPQ06003: Goliath
protein (Contains 1 RING-type zinc finger) (G1 protein),
Fruit fly
Length = 704
Score = 40.1 bits (20), Expect = 0.037
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 958 tctttctttttctttttttc 977
||||||||||||||||||||
Sbjct: 32 tctttctttttctttttttc 13
>At1g05250.1 68414.m00531 peroxidase, putative similar to peroxidase; peroxidase
ATP11a [Arabidopsis thaliana] gi|1546688|emb|CAA67334
Length = 1346
Score = 40.1 bits (20), Expect = 0.037
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 956 tttctttctttttctttttt 975
||||||||||||||||||||
Sbjct: 1084 tttctttctttttctttttt 1103
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 53,131
Number of Sequences: 29161
Number of extensions: 53131
Number of successful extensions: 1749
Number of sequences better than 10.0: 228
length of query: 1052
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1034
effective length of database: 43,533,334
effective search space: 45013467356
effective search space used: 45013467356
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)