BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BX841406.r
(1110 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g28130.1 68415.m03417 expressed protein 2064 0.0
At3g03180.1 68416.m00314 Got1-like family protein contains ... 38 0.16
AtMg00450 orf106b#hypothetical protein 34 2.4
At5g48820.1 68418.m06040 kip-related protein 3 (KRP3) / cyc... 34 2.4
At5g38490.1 68418.m04652 hypothetical protein contains Pfam... 34 2.4
>At2g28130.1 68415.m03417 expressed protein
Length = 1744
Score = 2064 bits (1041), Expect = 0.0
Identities = 1100/1112 (98%), Gaps = 7/1112 (0%)
Strand = Plus / Plus
Query: 1 taaaattggtgg-gggtcttaccgttgatgaag-aacaacttttaaatgaaggcttgctg 58
|||| ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 530 taaatttggtggtgggtcttaccgttgatgaaggaacaacttttat-tgaaggcttgctg 588
Query: 59 gttaacggctggctcacaagactgatcatgacttgtggacgtgtggaaaagttcatttgc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gttaacggctggctcacaagactgatcatgacttgtggacgtgtggaaaagttcatttgc 648
Query: 119 aagtggacgcttaatatattgttgtattcatctaaagaagatctaagatcatctgcttgt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aagtggacgcttaatatattgttgtattcatctaaagaagatctaagatcatctgcttgt 708
Query: 179 gacttttggtgtcccatactgttatcacaaaacaatgttaatggagcttctgttgagatt 238
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 709 gacttttggtgttccatactgttatcacaaaacaaggttaatggagcttctgttgagatt 768
Query: 239 tactggcttcctaactatcaggaacttaaagaagctcttgaatcatatgggttcagaatt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tactggcttcctaactatcaggaacttaaagaagctcttgaatcatatgggttcagaatt 828
Query: 299 agtctgtcacactcacaagacgttgaactagcagaagcggattctgagtgtcaaggtcct 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 agtctgtcacactcacaagacgttgaactagcagaagcggattctgagtgtcaaggtcct 888
Query: 359 ccacagaatattagagcttggttaacattggttacaacttgttgtcaatttaggtgtaaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 ccacagaatattagagcttggttaacattggttacaacttgttgtcaatttaggtgtaaa 948
Query: 419 aaacctatttttaccacttcacaagttgaacagatagccgaaatccttgtatcgttgctc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 aaacctatttttaccacttcacaagttgaacagatagccgaaatccttgtatcgttgctc 1008
Query: 479 ttagatcgcagtcttctcgggtctttcaattctcttacaagagtgcttaatatctgttat 538
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 ttagatcgcagtcttctc-ggtctttcaattctcttacaagagtgcttaatatctgttat 1067
Query: 539 tggatccttcaaagaggaagaatggatttcaagctgcaagaaaatagctaactctcttgc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 tggatccttcaaagaggaagaatggatttcaagctgcaagaaaatagctaactctcttgc 1127
Query: 599 ttccagagtacctcaagacataaattgtttgagggtagtggaatctgtatcaggtgttga 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1128 ttccagagtacctcaagacataaattgtttgagggtagtggaatctgtatcaggtgttga 1187
Query: 659 tgctcgaagcaagcatctgagaagttccattgcacatcaaatgcttgttgttttacttga 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1188 tgctcgaagcaagcatctgagaagttccattgcacatcaaatgcttgttgttttacttga 1247
Query: 719 tcataaggacagcgacgaaaatttgctgagctcgctgatgtctatcaatgtgaaggagag 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1248 tcataaggacagcgacgaaaatttgctgagctcgctgatgtctatcaatgtgaaggagag 1307
Query: 779 aagttgtaaccttttcaaaatgtacattttcctggtattggctgagaactggctcttctc 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1308 aagttgtaaccttttcaaaatgtacattttcctggtattggctgagaactggctcttctc 1367
Query: 839 tagtacattggtagaaagcaaagcctgtactgagggacatgtgcgcgctgtgtttctcag 898
|||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 1368 tagtacattggtag-aagcaaagcctgtactgagggacatgt--gggctgtgtttctcag 1424
Query: 899 aaactgttcttgtcagatcaacagcaccgatcttcggtcttatgcatcaaaagttcgaac 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1425 aaactgttcttgtcagatcaacagcaccgatcttcggtcttatgcatcaaaagttcgaac 1484
Query: 959 cagagccgcctatcttcttcaaggttgcagcagcaattgaaggagtacaactgaaacttc 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1485 cagagccgcctatcttcttcaaggttgcagcagcaattgaaggagtacaactgaaacttc 1544
Query: 1019 agcagtagtttggtttgctgattaaaatttcgctaatataaatgtctttatagaagtatt 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1545 agcagtagtttggtttgctgattaaaatttcgctaatataaatgtctttatagaagtatt 1604
Query: 1079 tttactactataaatccattaaaacaaaattt 1110
||||||||||||||||||||||||||||||||
Sbjct: 1605 tttactactataaatccattaaaacaaaattt 1636
>At3g03180.1 68416.m00314 Got1-like family protein contains Pfam profile:
PF04178 Got1-like family
Length = 573
Score = 38.2 bits (19), Expect = 0.16
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 274 tcttgaatcatatgggttc 292
|||||||||||||||||||
Sbjct: 414 tcttgaatcatatgggttc 432
>AtMg00450 orf106b#hypothetical protein
Length = 321
Score = 34.2 bits (17), Expect = 2.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 598 cttccagagtacctcaa 614
|||||||||||||||||
Sbjct: 52 cttccagagtacctcaa 68
>At5g48820.1 68418.m06040 kip-related protein 3 (KRP3) / cyclin-dependent kinase
inhibitor 3 (ICK3) identical to cyclin-dependent kinase
inhibitor 3 (krp3) [Arabidopsis thaliana] GI:14422289
Length = 669
Score = 34.2 bits (17), Expect = 2.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 951 gttcgaaccagagccgc 967
|||||||||||||||||
Sbjct: 85 gttcgaaccagagccgc 101
>At5g38490.1 68418.m04652 hypothetical protein contains Pfam profile PF03754:
Domain of unknown function (DUF313)
Length = 1095
Score = 34.2 bits (17), Expect = 2.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 25 tgatgaagaacaacttttaaa 45
|||||||||||||| ||||||
Sbjct: 342 tgatgaagaacaacgtttaaa 362
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,057
Number of Sequences: 29161
Number of extensions: 37057
Number of successful extensions: 710
Number of sequences better than 10.0: 56
length of query: 1110
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1092
effective length of database: 43,533,334
effective search space: 47538400728
effective search space used: 47538400728
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)