BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BX841397.r
(1069 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15475.1 68417.m02365 F-box family protein (FBL4) 99.7% ... 2042 0.0
At1g78200.2 68414.m09113 protein phosphatase 2C, putative /... 36 0.59
At1g78200.1 68414.m09112 protein phosphatase 2C, putative /... 36 0.59
At5g42170.1 68418.m05133 family II extracellular lipase, pu... 34 2.3
At3g42870.1 68416.m04493 hypothetical protein 34 2.3
>At4g15475.1 68417.m02365 F-box family protein (FBL4) 99.7% identical to F-box
protein family, AtFBL4 (GP:21536497) [Arabidopsis
thaliana]; similar to grr1 GI:2407790 from [Glycine max]
Length = 2464
Score = 2042 bits (1030), Expect = 0.0
Identities = 1063/1070 (99%), Gaps = 3/1070 (0%)
Strand = Plus / Plus
Query: 1 gggcatgcgagccatcggtaaagggtctaagaagttgaaagatctaacttttaagtgatt 60
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 981 gggcatgcgagccatcggtaaagggtctaagaagttgaaagatcttacttt-aagtgatt 1039
Query: 61 gttactttgtgagttgcaaaggtttagaagctattgctcatggttgtaaggaacttgagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1040 gttactttgtgagttgcaaaggtttagaagctattgctcatggttgtaaggaacttgagc 1099
Query: 121 gtgtggaaattaacggatgccacaacattggtacacgtggaatagaggcaattggaaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1100 gtgtggaaattaacggatgccacaacattggtacacgtggaatagaggcaattggaaaat 1159
Query: 181 cttgcccgcgcctcaaagagttagctttgttgtattgccaaaggattggtaattcggctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1160 cttgcccgcgcctcaaagagttagctttgttgtattgccaaaggattggtaattcggctc 1219
Query: 241 ttcaagaaattggaaaaggctgtaaatccctagaaatacttcacttagtagactgctctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1220 ttcaagaaattggaaaaggctgtaaatccctagaaatacttcacttagtagactgctctg 1279
Query: 301 gttttggagacatcgctatgtgcagtattgctaaagg-tgtcgcaacctcaagaaacttc 359
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1280 gcattggagacatcgctatgtgcagtattgctaaaggctgtcgcaacctcaagaaacttc 1339
Query: 360 atatccgcagatgctatgagataggaaacaaaggaattatatctattggaaagcattgca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1340 atatccgcagatgctatgagataggaaacaaaggaattatatctattggaaagcattgca 1399
Query: 420 aatcactaaccgagcttagtctccggttttgcgataaagttggaaataaagcattaatcg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1400 aatcactaaccgagcttagtctccggttttgcgataaagttggaaataaagcattaatcg 1459
Query: 480 ccattggaaaaggttgctccttacaacaactaaacgtaagtggttgtaatcaaatcagcg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1460 ccattggaaaaggttgctccttacaacaactaaacgtaagtggttgtaatcaaatcagcg 1519
Query: 540 atgctggaataacagcaatcgccagaggctgtcctcaactaactcacctcgcacattagt 599
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 1520 atgctggaataacagcaatcgccagaggctgtcctcaactcactcacctcg-acattagt 1578
Query: 600 gttcttcagaacattggagacatgccgttggctgagcttggagaaggatgtccaatgctg 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1579 gttcttcagaacattggagacatgccgttggctgagcttggagaaggatgtccaatgctg 1638
Query: 660 aaagacttggtcttgtctcattgccaccatataacagacaatggtctgaaccatcttgta 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1639 aaagacttggtcttgtctcattgccaccatataacagacaatggtctgaaccatcttgta 1698
Query: 720 cagaagtgcaaacttctggagacttgtcacatggtttactgcccagggatcacttccgct 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1699 cagaagtgcaaacttctggagacttgtcacatggtttactgcccagggatcacttccgct 1758
Query: 780 ggagtggctacagtcgtctcgagctgtccacacatcaaaaaggtgttgatagagaaatgg 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1759 ggagtggctacagtcgtctcgagctgtccacacatcaaaaaggtgttgatagagaaatgg 1818
Query: 840 aaagtgactgagaggacgacaaggagagctggatcggttatctcttatctatgcatggat 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1819 aaagtgactgagaggacgacaaggagagctggatcggttatctcttatctatgcatggat 1878
Query: 900 ctctagatcgtaatttcaaggtcagtttctaagatttatgtttatgttttcttaataaaa 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1879 ctctagatcgtaatttcaaggtcagtttctaagatttatgtttatgttttcttaataaaa 1938
Query: 960 gtaataacttatagtccaaacttatggtgagtcatggttgtttattgtatgtttatgtga 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1939 gtaataacttatagtccaaacttatggtgagtcatggttgtttattgtatgtttatgtga 1998
Query: 1020 actggttgtacatggatgaaaactttgtcgggatacaaacatgtgccgaa 1069
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1999 actggttgtacatggatgaaaactttgtcgggatacaaacatgtgccgaa 2048
>At1g78200.2 68414.m09113 protein phosphatase 2C, putative / PP2C, putative
similar to protein phosphatase 2C GB:CAA72341 [Medicago
sativa]; contains Pfam profile: PF00481 Protein
phosphatase 2C
Length = 1113
Score = 36.2 bits (18), Expect = 0.59
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 27 ctaagaagttgaaagatc 44
||||||||||||||||||
Sbjct: 795 ctaagaagttgaaagatc 812
>At1g78200.1 68414.m09112 protein phosphatase 2C, putative / PP2C, putative
similar to protein phosphatase 2C GB:CAA72341 [Medicago
sativa]; contains Pfam profile: PF00481 Protein
phosphatase 2C
Length = 1194
Score = 36.2 bits (18), Expect = 0.59
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 27 ctaagaagttgaaagatc 44
||||||||||||||||||
Sbjct: 874 ctaagaagttgaaagatc 891
>At5g42170.1 68418.m05133 family II extracellular lipase, putative similar to
family II lipase EXL3 [Arabidopsis thaliana]
GI:15054386; contains InterPro Entry IPR001087 Lipolytic
enzyme, G-D-S-L family
Length = 960
Score = 34.2 bits (17), Expect = 2.3
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 880 tctcttatctatgcatggatctcta 904
|||||||| | ||||||||||||||
Sbjct: 24 tctcttatgtttgcatggatctcta 48
>At3g42870.1 68416.m04493 hypothetical protein
Length = 939
Score = 34.2 bits (17), Expect = 2.3
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1033 ggatgaaaactttgtcg 1049
|||||||||||||||||
Sbjct: 383 ggatgaaaactttgtcg 367
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,744
Number of Sequences: 29161
Number of extensions: 29744
Number of successful extensions: 616
Number of sequences better than 10.0: 40
length of query: 1069
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1051
effective length of database: 43,533,334
effective search space: 45753534034
effective search space used: 45753534034
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)