BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BX841390.r
(1089 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g20270.1 68417.m02961 leucine-rich repeat transmembrane ... 2024 0.0
At3g49670.1 68416.m05429 leucine-rich repeat transmembrane ... 109 5e-23
At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) id... 80 4e-14
At5g59650.1 68418.m07479 leucine-rich repeat protein kinase... 68 2e-10
At5g65700.1 68418.m08269 leucine-rich repeat transmembrane ... 64 3e-09
>At4g20270.1 68417.m02961 leucine-rich repeat transmembrane protein kinase,
putative CLAVATA1 receptor kinase, Arabidopsis th.,
PATX:G2160756
Length = 3295
Score = 2024 bits (1021), Expect = 0.0
Identities = 1066/1077 (98%), Gaps = 3/1077 (0%)
Strand = Plus / Plus
Query: 15 gcctactagg-tttttcttg-tgttcgtcgttttagctgtgttcaagaataggagaatga 72
|||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 2152 gcctactagggtttttcttggtgttcgtcgttttagctgtggtcaagaataggagaatga 2211
Query: 73 gaaagaacaaccccgaatttatggaagcttatagggtttcagaagctcggtttcagaagc 132
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2212 gaaagaacaaccc-gaatttatggaagcttatagggtttcagaagctcggtttcagaagc 2270
Query: 133 gaacacatattagaatgtgttaaagagaaccatgtgattgggaaaggcggagcagggatt 192
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2271 gaacacatattagaatgtgttaaagagaaccatgtgattgggaaaggcggacgagggatt 2330
Query: 193 gtctacaaaggggtaatgccaaacggagaagaagttgcagtcaagaagctcttaaccata 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2331 gtctacaaaggggtaatgccaaacggagaagaagttgcagtcaagaagctcttaaccata 2390
Query: 253 accaaaggatcatctcatgacaacggtttagccgcagagattcagacattaggtagaatc 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2391 accaaaggatcatctcatgacaacggtttagccgcagagattcagacattaggtagaatc 2450
Query: 313 agacacagaaacatagtgagattgctcgctttttgttcaaacaaagacgtgaatctcctt 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2451 agacacagaaacatagtgagattgctcgctttttgttcaaacaaagacgtgaatctcctt 2510
Query: 373 gtttacgagtatatgcctaatggtagcctcggagaagtcttgcacgggaaagctggagtg 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2511 gtttacgagtatatgcctaatggtagcctcggagaagtcttgcacgggaaagctggagtg 2570
Query: 433 tttttgaaatgggaaacacggttgcaaatagcgttggaagcggctaaggggttgtgttat 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2571 tttttgaaatgggaaacacggttgcaaatagcgttggaagcggctaaggggttgtgttat 2630
Query: 493 cttcaccatgattgctcgccacttataatccaccgtgatgtgaagtcaaacaacatcttg 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2631 cttcaccatgattgctcgccacttataatccaccgtgatgtgaagtcaaacaacatcttg 2690
Query: 553 ttgggtcctgagtttgaagctcatgttgctgattttgggcttgctaagtttatgatgcaa 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2691 ttgggtcctgagtttgaagctcatgttgctgattttgggcttgctaagtttatgatgcaa 2750
Query: 613 gacaatggagcttccgagtgcatgtcctcgatcgctggctcgtacggctacatcgcccca 672
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2751 gacaatggagcttccgagtgcatgtcctcgatcgctggctcgtacggctacatcgctcca 2810
Query: 673 gaatatgcatatacactgagaatagacgagaagagcgatgtgtacagcttcggagtagtg 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2811 gaatatgcatatacactgagaatagacgagaagagcgatgtgtacagcttcggagtagtg 2870
Query: 733 ttattggagccgattacggctcccaaaccagtagataattttggggaagaagggatagac 792
|||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 2871 ttattggagctgattacgggtcgaaaaccagtagataattttggggaagaagggatagac 2930
Query: 793 attgtgcaatggtcaaagatccaaacaaactgtaacagacaaggtgtggtgaagatcatt 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2931 attgtgcaatggtcaaagatccaaacaaactgtaacagacaaggtgtggtgaagatcatt 2990
Query: 853 gaccagagattgagcaatattccattagcagaggccatggaactgttctttgtggcaatg 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2991 gaccagagattgagcaatattccattagcagaggccatggaactgttctttgtggcaatg 3050
Query: 913 ctatgtgtgcaagaacatagtgttgagagaccgaccatgagagaggttgtccagatgatc 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3051 ctatgtgtgcaagaacatagtgttgagagaccgaccatgagagaggttgtccagatgatc 3110
Query: 973 tctcaggctaaacagcctaatactttctaaatgcagtgatgttatatatataagagacta 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3111 tctcaggctaaacagcctaatactttctaaatgcagtgatgttatatatataagagacta 3170
Query: 1033 aatatatatttttctgttttatgtgtttcatagagttttgtttttagaatttgtaat 1089
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3171 aatatatatttttctgttttatgtgtttcatagagttttgtttttagaatttgtaat 3227
>At3g49670.1 68416.m05429 leucine-rich repeat transmembrane protein kinase,
putative CLAVATA1 receptor kinase, Arabidopsis thaliana,
EMBL:ATU96879
Length = 3452
Score = 109 bits (55), Expect = 5e-23
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 289 gagattcagacattaggtagaatcagacacagaaacatagtgagattgctcgctttttgt 348
||||||||||| |||||||||||||||||||| |||| |||||| |||||| ||||||
Sbjct: 2379 gagattcagacgctaggtagaatcagacacagacacatcgtgagactgctcggtttttgc 2438
Query: 349 tcaaacaaagacgtgaatctccttgtttacgagtatatgcctaatggtagcctcggaga 407
|| ||| | || |||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct: 2439 tccaaccacgaaacgaatctccttgtgtacgagtacatgcctaatggtagccttggaga 2497
Score = 50.1 bits (25), Expect = 4e-05
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 649 ggctcgtacggctacatcgccccagaatatgcatatacactgagaatagacgagaagagc 708
||||| ||||||||||| || ||||| || || |||||| ||| |||| |||||||||
Sbjct: 2736 ggctcctacggctacatagctccagagtacgcgtatacattgaaggtagatgagaagagc 2795
Query: 709 gatgtgtacagcttcgg 725
|||||||| || |||||
Sbjct: 2796 gatgtgtatagtttcgg 2812
Score = 42.1 bits (21), Expect = 0.010
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 175 aaaggcggagcagggattgtctacaaagg 203
|||||||| || |||||||||||||||||
Sbjct: 2265 aaaggcggtgctgggattgtctacaaagg 2293
>At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identical to receptor
kinase (CLV1) GB:AAB58929 GI:2160756 [Arabidopsis
thaliana]
Length = 3431
Score = 79.8 bits (40), Expect = 4e-14
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 622 gcttccgagtgcatgtcctcgatcgctggctcgtacggctacatcgccccagaatatgca 681
||||| ||||| ||||| || || |||||||| || || |||||||||||||| ||||||
Sbjct: 2858 gcttctgagtgtatgtcttcaattgctggctcttatggatacatcgccccagagtatgca 2917
Query: 682 tatacactgagaatagacgagaagagcgatgtgtacagcttcggagtagtgttattggag 741
||||| ||| | | ||||||||||| |||||||| || |||||||| || || ||||||
Sbjct: 2918 tataccttgaaagtggacgagaagagtgatgtgtatagtttcggagtggttttgttggag 2977
Score = 79.8 bits (40), Expect = 4e-14
Identities = 112/136 (82%)
Strand = Plus / Plus
Query: 467 tggaagcggctaaggggttgtgttatcttcaccatgattgctcgccacttataatccacc 526
||||||| || ||||| ||||||||||||||||||||||| || ||| | || | ||
Sbjct: 2706 tggaagctgcaaagggcttgtgttatcttcaccatgattgttcaccattgatcttgcata 2765
Query: 527 gtgatgtgaagtcaaacaacatcttgttgggtcctgagtttgaagctcatgttgctgatt 586
| ||||| ||||| || ||||| | |||| |||| |||||||| |||||||||||||
Sbjct: 2766 gagatgttaagtccaataacattcttttggactctgattttgaagcccatgttgctgatt 2825
Query: 587 ttgggcttgctaagtt 602
||||||||||||||||
Sbjct: 2826 ttgggcttgctaagtt 2841
Score = 50.1 bits (25), Expect = 4e-05
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 363 gaatctccttgtttacgagtatatgcctaatggtagcctcggaga 407
|||||||||| |||| ||||| ||||||||||| ||||| |||||
Sbjct: 2602 gaatctccttctttatgagtacatgcctaatggaagccttggaga 2646
Score = 32.2 bits (16), Expect = 9.4
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 175 aaaggcggagcagggattgtctac 198
||||||||||| || |||||||||
Sbjct: 2417 aaaggcggagctggaattgtctac 2440
>At5g59650.1 68418.m07479 leucine-rich repeat protein kinase, putative contains
leucine rich repeat (LRR) domains, Pfam:PF00560; contains
protein kinase domain, Pfam:PF00069
Length = 2679
Score = 67.9 bits (34), Expect = 2e-10
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 700 gagaagagcgatgtgtacagcttcggagtagtgttattggag 741
||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 2302 gagaagagcgatgtgtacagcttcggaattgtgttattggag 2343
>At5g65700.1 68418.m08269 leucine-rich repeat transmembrane protein kinase,
putative
Length = 3380
Score = 63.9 bits (32), Expect = 3e-09
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 285 cgcagagattcagacattaggtagaatcagacacagaaacatagtgagattgctcgcttt 344
|||||||||||| || ||||| || || ||||||||| |||||||||| | |||| ||
Sbjct: 2280 cgcagagattcaaaccttaggaaggataagacacagacacatagtgaggcttctcggatt 2339
Query: 345 ttgttcaaacaaagacgtgaatctccttgtttacgagtatatgcctaatggtagcctcgg 404
||| |||||| | || |||||| ||||| || ||||| |||||||||||||| |||||
Sbjct: 2340 ttgctcaaaccacgagacgaatctacttgtctatgagtacatgcctaatggtagtctcgg 2399
Score = 61.9 bits (31), Expect = 1e-08
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 643 atcgctggctcgtacggctacatcgccccagaatatgcatatacactgagaatagacgag 702
||||||||||| ||||||||||| || ||||| ||||| ||||| ||| |||| |||
Sbjct: 2635 atcgctggctcttacggctacatagctccagagtatgcgtatacgttgaaggtagatgag 2694
Query: 703 aagagcgatgtgtacagcttcgg 725
|||||||||||||| || |||||
Sbjct: 2695 aagagcgatgtgtatagtttcgg 2717
Score = 46.1 bits (23), Expect = 6e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 565 tttgaagctcatgttgctgattttgggcttgctaa 599
|||||||||||||||||||| ||||| || |||||
Sbjct: 2560 tttgaagctcatgttgctgactttggtctcgctaa 2594
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 34,778
Number of Sequences: 29161
Number of extensions: 34778
Number of successful extensions: 1001
Number of sequences better than 10.0: 178
length of query: 1089
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1071
effective length of database: 43,533,334
effective search space: 46624200714
effective search space used: 46624200714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)